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Search of human proteins with 239748273
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748273 PREDICTED: chromosome 3 open reading frame 76
[Homo sapiens]
(360 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753703 PREDICTED: chromosome 3 open reading frame 76 [Homo... 737 0.0
gi|239748273 PREDICTED: chromosome 3 open reading frame 76 [Homo... 737 0.0
gi|239742174 PREDICTED: chromosome 3 open reading frame 76 [Homo... 737 0.0
gi|93102405 hypothetical protein LOC84182 [Homo sapiens] 201 6e-52
gi|13376431 chromosome 10 open reading frame 97 [Homo sapiens] 78 1e-14
gi|192807300 calcium channel, voltage-dependent, L type, alpha 1... 30 4.4
gi|192807298 calcium channel, voltage-dependent, L type, alpha 1... 30 4.4
gi|4502527 calcium channel, voltage-dependent, L type, alpha 1D ... 30 4.4
gi|119120894 Dmx-like 2 [Homo sapiens] 30 4.4
gi|33188445 microfilament and actin filament cross-linker protei... 29 5.7
gi|54607014 TBC1 domain family, member 25 [Homo sapiens] 29 7.5
>gi|239753703 PREDICTED: chromosome 3 open reading frame 76 [Homo
sapiens]
Length = 360
Score = 737 bits (1903), Expect = 0.0
Identities = 360/360 (100%), Positives = 360/360 (100%)
Query: 1 MATKLRQILFGNTVHVFSYNWKKAYFRFHDPSSELAFTLEVGKGGARSIQMAVQGSIIKY 60
MATKLRQILFGNTVHVFSYNWKKAYFRFHDPSSELAFTLEVGKGGARSIQMAVQGSIIKY
Sbjct: 1 MATKLRQILFGNTVHVFSYNWKKAYFRFHDPSSELAFTLEVGKGGARSIQMAVQGSIIKY 60
Query: 61 LLFTRKGKDCNLGNLCEISKKEQEQALAAALAGILWAAGAAQKATICLVTEDIYVASTPD 120
LLFTRKGKDCNLGNLCEISKKEQEQALAAALAGILWAAGAAQKATICLVTEDIYVASTPD
Sbjct: 61 LLFTRKGKDCNLGNLCEISKKEQEQALAAALAGILWAAGAAQKATICLVTEDIYVASTPD 120
Query: 121 YSVDNFTERLQLFEFLEKEAAEKFIYDHLLCFRGEGSHGVILFLYSLIFSRTFERLQMDL 180
YSVDNFTERLQLFEFLEKEAAEKFIYDHLLCFRGEGSHGVILFLYSLIFSRTFERLQMDL
Sbjct: 121 YSVDNFTERLQLFEFLEKEAAEKFIYDHLLCFRGEGSHGVILFLYSLIFSRTFERLQMDL 180
Query: 181 DVTTTQLLQPNAGGFLCRQAVLNMILTGRASPNVFNGCEEGKSQETLHGVLTRSDVGYLQ 240
DVTTTQLLQPNAGGFLCRQAVLNMILTGRASPNVFNGCEEGKSQETLHGVLTRSDVGYLQ
Sbjct: 181 DVTTTQLLQPNAGGFLCRQAVLNMILTGRASPNVFNGCEEGKSQETLHGVLTRSDVGYLQ 240
Query: 241 WGKDASEDDRLSQVGSMLKTPKLPIWLCNINGNYSILFCTNRQLLSDWKMERLFDLYFYS 300
WGKDASEDDRLSQVGSMLKTPKLPIWLCNINGNYSILFCTNRQLLSDWKMERLFDLYFYS
Sbjct: 241 WGKDASEDDRLSQVGSMLKTPKLPIWLCNINGNYSILFCTNRQLLSDWKMERLFDLYFYS 300
Query: 301 GQPSQKKLVRLTIDTHSHHWERDQQEEKHGPRRRFSPVEMAIRTKWSEATINWNGTVPFF 360
GQPSQKKLVRLTIDTHSHHWERDQQEEKHGPRRRFSPVEMAIRTKWSEATINWNGTVPFF
Sbjct: 301 GQPSQKKLVRLTIDTHSHHWERDQQEEKHGPRRRFSPVEMAIRTKWSEATINWNGTVPFF 360
>gi|239748273 PREDICTED: chromosome 3 open reading frame 76 [Homo
sapiens]
Length = 360
Score = 737 bits (1903), Expect = 0.0
Identities = 360/360 (100%), Positives = 360/360 (100%)
Query: 1 MATKLRQILFGNTVHVFSYNWKKAYFRFHDPSSELAFTLEVGKGGARSIQMAVQGSIIKY 60
MATKLRQILFGNTVHVFSYNWKKAYFRFHDPSSELAFTLEVGKGGARSIQMAVQGSIIKY
Sbjct: 1 MATKLRQILFGNTVHVFSYNWKKAYFRFHDPSSELAFTLEVGKGGARSIQMAVQGSIIKY 60
Query: 61 LLFTRKGKDCNLGNLCEISKKEQEQALAAALAGILWAAGAAQKATICLVTEDIYVASTPD 120
LLFTRKGKDCNLGNLCEISKKEQEQALAAALAGILWAAGAAQKATICLVTEDIYVASTPD
Sbjct: 61 LLFTRKGKDCNLGNLCEISKKEQEQALAAALAGILWAAGAAQKATICLVTEDIYVASTPD 120
Query: 121 YSVDNFTERLQLFEFLEKEAAEKFIYDHLLCFRGEGSHGVILFLYSLIFSRTFERLQMDL 180
YSVDNFTERLQLFEFLEKEAAEKFIYDHLLCFRGEGSHGVILFLYSLIFSRTFERLQMDL
Sbjct: 121 YSVDNFTERLQLFEFLEKEAAEKFIYDHLLCFRGEGSHGVILFLYSLIFSRTFERLQMDL 180
Query: 181 DVTTTQLLQPNAGGFLCRQAVLNMILTGRASPNVFNGCEEGKSQETLHGVLTRSDVGYLQ 240
DVTTTQLLQPNAGGFLCRQAVLNMILTGRASPNVFNGCEEGKSQETLHGVLTRSDVGYLQ
Sbjct: 181 DVTTTQLLQPNAGGFLCRQAVLNMILTGRASPNVFNGCEEGKSQETLHGVLTRSDVGYLQ 240
Query: 241 WGKDASEDDRLSQVGSMLKTPKLPIWLCNINGNYSILFCTNRQLLSDWKMERLFDLYFYS 300
WGKDASEDDRLSQVGSMLKTPKLPIWLCNINGNYSILFCTNRQLLSDWKMERLFDLYFYS
Sbjct: 241 WGKDASEDDRLSQVGSMLKTPKLPIWLCNINGNYSILFCTNRQLLSDWKMERLFDLYFYS 300
Query: 301 GQPSQKKLVRLTIDTHSHHWERDQQEEKHGPRRRFSPVEMAIRTKWSEATINWNGTVPFF 360
GQPSQKKLVRLTIDTHSHHWERDQQEEKHGPRRRFSPVEMAIRTKWSEATINWNGTVPFF
Sbjct: 301 GQPSQKKLVRLTIDTHSHHWERDQQEEKHGPRRRFSPVEMAIRTKWSEATINWNGTVPFF 360
>gi|239742174 PREDICTED: chromosome 3 open reading frame 76 [Homo
sapiens]
Length = 360
Score = 737 bits (1903), Expect = 0.0
Identities = 360/360 (100%), Positives = 360/360 (100%)
Query: 1 MATKLRQILFGNTVHVFSYNWKKAYFRFHDPSSELAFTLEVGKGGARSIQMAVQGSIIKY 60
MATKLRQILFGNTVHVFSYNWKKAYFRFHDPSSELAFTLEVGKGGARSIQMAVQGSIIKY
Sbjct: 1 MATKLRQILFGNTVHVFSYNWKKAYFRFHDPSSELAFTLEVGKGGARSIQMAVQGSIIKY 60
Query: 61 LLFTRKGKDCNLGNLCEISKKEQEQALAAALAGILWAAGAAQKATICLVTEDIYVASTPD 120
LLFTRKGKDCNLGNLCEISKKEQEQALAAALAGILWAAGAAQKATICLVTEDIYVASTPD
Sbjct: 61 LLFTRKGKDCNLGNLCEISKKEQEQALAAALAGILWAAGAAQKATICLVTEDIYVASTPD 120
Query: 121 YSVDNFTERLQLFEFLEKEAAEKFIYDHLLCFRGEGSHGVILFLYSLIFSRTFERLQMDL 180
YSVDNFTERLQLFEFLEKEAAEKFIYDHLLCFRGEGSHGVILFLYSLIFSRTFERLQMDL
Sbjct: 121 YSVDNFTERLQLFEFLEKEAAEKFIYDHLLCFRGEGSHGVILFLYSLIFSRTFERLQMDL 180
Query: 181 DVTTTQLLQPNAGGFLCRQAVLNMILTGRASPNVFNGCEEGKSQETLHGVLTRSDVGYLQ 240
DVTTTQLLQPNAGGFLCRQAVLNMILTGRASPNVFNGCEEGKSQETLHGVLTRSDVGYLQ
Sbjct: 181 DVTTTQLLQPNAGGFLCRQAVLNMILTGRASPNVFNGCEEGKSQETLHGVLTRSDVGYLQ 240
Query: 241 WGKDASEDDRLSQVGSMLKTPKLPIWLCNINGNYSILFCTNRQLLSDWKMERLFDLYFYS 300
WGKDASEDDRLSQVGSMLKTPKLPIWLCNINGNYSILFCTNRQLLSDWKMERLFDLYFYS
Sbjct: 241 WGKDASEDDRLSQVGSMLKTPKLPIWLCNINGNYSILFCTNRQLLSDWKMERLFDLYFYS 300
Query: 301 GQPSQKKLVRLTIDTHSHHWERDQQEEKHGPRRRFSPVEMAIRTKWSEATINWNGTVPFF 360
GQPSQKKLVRLTIDTHSHHWERDQQEEKHGPRRRFSPVEMAIRTKWSEATINWNGTVPFF
Sbjct: 301 GQPSQKKLVRLTIDTHSHHWERDQQEEKHGPRRRFSPVEMAIRTKWSEATINWNGTVPFF 360
>gi|93102405 hypothetical protein LOC84182 [Homo sapiens]
Length = 757
Score = 201 bits (512), Expect = 6e-52
Identities = 130/363 (35%), Positives = 190/363 (52%), Gaps = 23/363 (6%)
Query: 1 MATKLRQILFGNTVHVFSYNWKKAYFRFHDPSSELAFTLEVGKGGARSIQMAVQGSIIKY 60
+A +++ +LFG++ F+ WK F F + +S L + + KGG + AVQG +++
Sbjct: 411 VAKEIKTLLFGSSFCCFNEEWKLQSFSFSNTAS-LKYGIVQNKGGPCGVLAAVQGCVLQK 469
Query: 61 LLFTRKGK-DCNLGNLCEISKKEQEQALAAALAGILWAAGAAQKATICLVTEDIYVASTP 119
LLF K DC G + S + + L ALA I+W AG ++A + L + + T
Sbjct: 470 LLFEGDSKADCAQG--LQPSDAHRTRCLVLALADIVWRAGGRERAVVALASRTQQFSPTG 527
Query: 120 DYSVDNFTERLQLFEFLEKEAAEKFIYDHLLCFRGEGSHGVILFLYSLIFSRTFERLQMD 179
Y D E L L E F+ + F G +G IL S I SR+ E ++ D
Sbjct: 528 KYKADGVLETLTLHSLTCYEDLVTFLQQSIHQFE-VGPYGCILLTLSAILSRSTELIRQD 586
Query: 180 LDVTTTQLLQPNAGGFLCRQAVLNMILTGRASPNVFNGCEEGKSQE----TLHGVLTRSD 235
DV T+ L+ A G+ C Q ++N++LTG+A NVFN E S + L G+ RSD
Sbjct: 587 FDVPTSHLI--GAHGY-CTQELVNLLLTGKAVSNVFNDVVELDSGDGNITLLRGIAARSD 643
Query: 236 VGYLQWGKDASEDDRLSQVGSMLKTPKLPIWLCNINGNYSILFCTNRQLLSDWKMERLFD 295
+G+L E + QVG LKTP+ PIW+ ++SILF LL DW+ ERLFD
Sbjct: 644 IGFLS----LFEHYNMCQVGCFLKTPRFPIWVVCSESHFSILFSLQPGLLRDWRTERLFD 699
Query: 296 LYFYSGQPSQKKLVRLTIDTHSHHWERDQQEEKHGPRRRFSPVEMAIRTKWSEATINWNG 355
LY+Y G +Q++ +RLTIDT Q + P+E+ IRTKW A++NWNG
Sbjct: 700 LYYYDGLANQQEQIRLTIDT-------TQTISEDTDNDLVPPLELCIRTKWKGASVNWNG 752
Query: 356 TVP 358
+ P
Sbjct: 753 SDP 755
>gi|13376431 chromosome 10 open reading frame 97 [Homo sapiens]
Length = 445
Score = 78.2 bits (191), Expect = 1e-14
Identities = 69/275 (25%), Positives = 127/275 (46%), Gaps = 44/275 (16%)
Query: 39 LEVGKGGARSIQMAVQGSIIKYLLFTRKG---KDCNLGNLCEISKKEQEQALAAALAGIL 95
LE +GG ++ VQ ++K LLF+ + +DC S++EQ++ L L IL
Sbjct: 43 LEQFEGGPCAVIAPVQAFLLKKLLFSSEKSSWRDC--------SEEEQKELLCHTLCDIL 94
Query: 96 WAAGAAQKATICLVT--------EDIYVASTP----------------DYSVDNFTERLQ 131
+A + CLV+ E ++ +P + + F +Q
Sbjct: 95 ESACCDHSGSYCLVSWLRGKTTEETASISGSPAESSCQVEHSSALAVEELGFERFHALIQ 154
Query: 132 LFEFLEKEAAEKFIYDHLLCFRGEGSHGVILFLYSLIFSRTFERLQMDLDVTTTQLLQPN 191
F + + D + + GV+LFLYS++ ++ E ++ +++ + L+ P
Sbjct: 155 KRSFRSLPELKDAVLDQYSMWGNK--FGVLLFLYSVLLTKGIENIKNEIEDASEPLIDPV 212
Query: 192 AGGFLCRQAVLNMILTGRASPNVFNGCEEGKSQETLHGVLTRSDVGYLQWGKDASEDDRL 251
G Q+++N++LTG A NV++G E + L G+ ++ VG+L E R
Sbjct: 213 YGHG--SQSLINLLLTGHAVSNVWDGDRECSGMKLL-GIHEQAAVGFLT----LMEALRY 265
Query: 252 SQVGSMLKTPKLPIWLCNINGNYSILFCTNRQLLS 286
+VGS LK+PK PIW+ + ++ F + L++
Sbjct: 266 CKVGSYLKSPKFPIWIVGSETHLTVFFAKDMALVA 300
>gi|192807300 calcium channel, voltage-dependent, L type, alpha 1D
subunit isoform b [Homo sapiens]
Length = 2161
Score = 29.6 bits (65), Expect = 4.4
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 124 DNFTERL-QLFEFLEKEAAEKFIYDHLLCFRGEGSHGVILFLYSLI 168
DNF + L +F+ L E +YD ++ + G S G+I+ +Y +I
Sbjct: 689 DNFPQALLTVFQILTGEDWNAVMYDGIMAYGGPSSSGMIVCIYFII 734
>gi|192807298 calcium channel, voltage-dependent, L type, alpha 1D
subunit isoform c [Homo sapiens]
Length = 2137
Score = 29.6 bits (65), Expect = 4.4
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 124 DNFTERL-QLFEFLEKEAAEKFIYDHLLCFRGEGSHGVILFLYSLI 168
DNF + L +F+ L E +YD ++ + G S G+I+ +Y +I
Sbjct: 689 DNFPQALLTVFQILTGEDWNAVMYDGIMAYGGPSSSGMIVCIYFII 734
>gi|4502527 calcium channel, voltage-dependent, L type, alpha 1D
subunit isoform a [Homo sapiens]
Length = 2181
Score = 29.6 bits (65), Expect = 4.4
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 124 DNFTERL-QLFEFLEKEAAEKFIYDHLLCFRGEGSHGVILFLYSLI 168
DNF + L +F+ L E +YD ++ + G S G+I+ +Y +I
Sbjct: 709 DNFPQALLTVFQILTGEDWNAVMYDGIMAYGGPSSSGMIVCIYFII 754
>gi|119120894 Dmx-like 2 [Homo sapiens]
Length = 3036
Score = 29.6 bits (65), Expect = 4.4
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Query: 121 YSVDNFTERLQLFEFLEKEAAEKFIYDHLLCFRGEGSHGVILFLYSLIFSRTFERLQMDL 180
Y VD R QL+ +LEKE A H +C +H ++ YS S+T+ +++ DL
Sbjct: 2062 YEVDGGKLRFQLYNWLEKEIAAL----HEIC-----NHESVIKEYS---SKTYSKVESDL 2109
Query: 181 DVTTTQLLQPNAGGF 195
+ +P+ G +
Sbjct: 2110 LDQEEMVDKPDIGSY 2124
>gi|33188445 microfilament and actin filament cross-linker protein
isoform a [Homo sapiens]
Length = 5430
Score = 29.3 bits (64), Expect = 5.7
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 255 GSMLKTPKLPIWLCNINGNYSILFCTNRQLLSDWKMERLFDLYFYSGQPSQKKLVRLTID 314
G M KL +W + Y+ + CTN S W ++F+ + +P + R+ I
Sbjct: 192 GDMSAKEKLLLWTQKVTAGYTGIKCTN--FSSCWSDGKMFNALIHRYRPDLVDMERVQIQ 249
Query: 315 THSHHWER 322
++ + E+
Sbjct: 250 SNRENLEQ 257
>gi|54607014 TBC1 domain family, member 25 [Homo sapiens]
Length = 688
Score = 28.9 bits (63), Expect = 7.5
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Query: 129 RLQLFEFLEKEAAEKFIYDHLLCFRGEGSHGVILFLYSLIFSRTFERLQMDLDVTTTQLL 188
RL+++ + + K ++ +LL +G G Y SR +E+L+ + Q
Sbjct: 221 RLRIYHGGVEPSLRKVVWRYLLNVYPDGLTGRERMDYMKRKSREYEQLKSEW----AQRA 276
Query: 189 QPNAGGFLCRQAVLNMILTGRASPNVFNGCEEGKSQETLHGVLTRSDVGYLQ 240
P F+ + +++ T RA P + G E+G LH +LT V + Q
Sbjct: 277 NPEDLEFIRSTVLKDVLRTDRAHP-YYAGPEDGPHLRALHDLLTTYAVTHPQ 327
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.136 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,559,405
Number of Sequences: 37866
Number of extensions: 567484
Number of successful extensions: 1158
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1142
Number of HSP's gapped (non-prelim): 13
length of query: 360
length of database: 18,247,518
effective HSP length: 103
effective length of query: 257
effective length of database: 14,347,320
effective search space: 3687261240
effective search space used: 3687261240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.