Search of human proteins with 239747637

Search of human proteins with 239747637

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239747637 PREDICTED: hypothetical protein XP_002347915,
partial [Homo sapiens]
         (346 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239747637 PREDICTED: hypothetical protein XP_002347915, parti...   715   0.0  
gi|55743130 ribosomal protein L32 [Homo sapiens]                       61   1e-09
gi|55743128 ribosomal protein L32 [Homo sapiens]                       61   1e-09
gi|4506635 ribosomal protein L32 [Homo sapiens]                        61   1e-09
gi|32483397 dopamine receptor D4 [Homo sapiens]                        36   0.058
gi|239755805 PREDICTED: hypothetical protein [Homo sapiens]            31   1.9  
gi|114205383 secretin receptor precursor [Homo sapiens]                30   2.4  
gi|157278361 nuclear localized factor 2 [Homo sapiens]                 30   3.2  
gi|150378533 ubiquitin specific peptidase 7 [Homo sapiens]             30   4.1  
gi|239755534 PREDICTED: doublecortin domain containing 5 [Homo s...    29   5.4  
gi|239750000 PREDICTED: doublecortin domain containing 5 [Homo s...    29   5.4  
gi|239744311 PREDICTED: doublecortin domain containing 5 [Homo s...    29   5.4  
gi|62243734 signal transducing adaptor family member 2 isoform 1...    29   7.1  
gi|4758416 golgi-specific brefeldin A resistant guanine nucleoti...    29   7.1  

>gi|239747637 PREDICTED: hypothetical protein XP_002347915, partial
           [Homo sapiens]
          Length = 346

 Score =  715 bits (1846), Expect = 0.0
 Identities = 346/346 (100%), Positives = 346/346 (100%)

Query: 1   SPTLNDGSLRPLMEPKSIQKRIKNFIWHQLDQFLVHYIKKLEVLLMGSESDCAGTARRAS 60
           SPTLNDGSLRPLMEPKSIQKRIKNFIWHQLDQFLVHYIKKLEVLLMGSESDCAGTARRAS
Sbjct: 1   SPTLNDGSLRPLMEPKSIQKRIKNFIWHQLDQFLVHYIKKLEVLLMGSESDCAGTARRAS 60

Query: 61  SKNQEPQRCFGKSSPAAVRVSNPNAGLPRQENEWAAMCHSTENDFLAFARVWQWFFKNQA 120
           SKNQEPQRCFGKSSPAAVRVSNPNAGLPRQENEWAAMCHSTENDFLAFARVWQWFFKNQA
Sbjct: 61  SKNQEPQRCFGKSSPAAVRVSNPNAGLPRQENEWAAMCHSTENDFLAFARVWQWFFKNQA 120

Query: 121 LHLEAPGETLGLQLLRAALLGRGGDVPPGIKVKLCPVLLTEWASLRRSKIVDDCATQSPL 180
           LHLEAPGETLGLQLLRAALLGRGGDVPPGIKVKLCPVLLTEWASLRRSKIVDDCATQSPL
Sbjct: 121 LHLEAPGETLGLQLLRAALLGRGGDVPPGIKVKLCPVLLTEWASLRRSKIVDDCATQSPL 180

Query: 181 EGPCGPWESSDVWSSVWELPGYRWPPPLSKTGAACVFRCPDPARIAALPVPRNPLANQTV 240
           EGPCGPWESSDVWSSVWELPGYRWPPPLSKTGAACVFRCPDPARIAALPVPRNPLANQTV
Sbjct: 181 EGPCGPWESSDVWSSVWELPGYRWPPPLSKTGAACVFRCPDPARIAALPVPRNPLANQTV 240

Query: 241 RSALAGHWDLLASGVPPSSCAAVFLCLFLTECSHVICGIRSVVINNTVGCVEAEDEAFSI 300
           RSALAGHWDLLASGVPPSSCAAVFLCLFLTECSHVICGIRSVVINNTVGCVEAEDEAFSI
Sbjct: 241 RSALAGHWDLLASGVPPSSCAAVFLCLFLTECSHVICGIRSVVINNTVGCVEAEDEAFSI 300

Query: 301 QPSGQNASPLMREKTFAVFQLERCLPIKVTADRRVALSLQEEPARL 346
           QPSGQNASPLMREKTFAVFQLERCLPIKVTADRRVALSLQEEPARL
Sbjct: 301 QPSGQNASPLMREKTFAVFQLERCLPIKVTADRRVALSLQEEPARL 346


>gi|55743130 ribosomal protein L32 [Homo sapiens]
          Length = 135

 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 44/135 (32%), Positives = 62/135 (45%), Gaps = 51/135 (37%)

Query: 8   SLRPLMEPKSIQKRIKNFIWHQLDQ----------------------------------- 32
           +LRPL++PK ++KR K FI HQ D+                                   
Sbjct: 3   ALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGS 62

Query: 33  --------------FLVHYIKKLEVLLMGSESDCAGTARRASSKNQEPQRCFGKSSPAAV 78
                         FLVH +K+LEVLLM ++S CA  A   SSKN+  +    +++  A+
Sbjct: 63  NKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNR--KAIVERAAQLAI 120

Query: 79  RVSNPNAGLPRQENE 93
           RV+NPNA L  +ENE
Sbjct: 121 RVTNPNARLRSEENE 135


>gi|55743128 ribosomal protein L32 [Homo sapiens]
          Length = 135

 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 44/135 (32%), Positives = 62/135 (45%), Gaps = 51/135 (37%)

Query: 8   SLRPLMEPKSIQKRIKNFIWHQLDQ----------------------------------- 32
           +LRPL++PK ++KR K FI HQ D+                                   
Sbjct: 3   ALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGS 62

Query: 33  --------------FLVHYIKKLEVLLMGSESDCAGTARRASSKNQEPQRCFGKSSPAAV 78
                         FLVH +K+LEVLLM ++S CA  A   SSKN+  +    +++  A+
Sbjct: 63  NKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNR--KAIVERAAQLAI 120

Query: 79  RVSNPNAGLPRQENE 93
           RV+NPNA L  +ENE
Sbjct: 121 RVTNPNARLRSEENE 135


>gi|4506635 ribosomal protein L32 [Homo sapiens]
          Length = 135

 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 44/135 (32%), Positives = 62/135 (45%), Gaps = 51/135 (37%)

Query: 8   SLRPLMEPKSIQKRIKNFIWHQLDQ----------------------------------- 32
           +LRPL++PK ++KR K FI HQ D+                                   
Sbjct: 3   ALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGS 62

Query: 33  --------------FLVHYIKKLEVLLMGSESDCAGTARRASSKNQEPQRCFGKSSPAAV 78
                         FLVH +K+LEVLLM ++S CA  A   SSKN+  +    +++  A+
Sbjct: 63  NKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNR--KAIVERAAQLAI 120

Query: 79  RVSNPNAGLPRQENE 93
           RV+NPNA L  +ENE
Sbjct: 121 RVTNPNARLRSEENE 135


>gi|32483397 dopamine receptor D4 [Homo sapiens]
          Length = 419

 Score = 35.8 bits (81), Expect = 0.058
 Identities = 53/199 (26%), Positives = 72/199 (36%), Gaps = 16/199 (8%)

Query: 96  AMCHSTENDFLAFARVWQWFFKNQALHLEAPGETLGLQ----LLRAALLGRGGDVPPGIK 151
           A+C   + D++ ++ V  +F     + L       GLQ      RA L GR    P G  
Sbjct: 183 AVCRLEDRDYVVYSSVCSFFLPCPLMLLLYWATFRGLQRWEVARRAKLHGRAPRRPSGPG 242

Query: 152 VKLCPVLLTEWASLRRSKIVDDCATQSP--LEGPCGPWESSDVWSSVWELPGYRWPPPLS 209
               P        L +     DCA  +P    GPCGP  +    S   +  G    PP  
Sbjct: 243 P---PSPTPPAPRLPQDPCGPDCAPPAPGLPRGPCGPDCAPAAPSLPQDPCGPDCAPPAP 299

Query: 210 KTGA-ACVFRC--PDPARIAALPVPRNPLANQTVRSALAGHWDLLASGVPPSSCAAVFLC 266
                 C   C  PD  R AALP    P   +  R+ + G  +  A  V P    A  LC
Sbjct: 300 GLPPDPCGSNCAPPDAVRAAALPPQTPPQTRRRRRAKITGR-ERKAMRVLPVVVGAFLLC 358

Query: 267 ---LFLTECSHVICGIRSV 282
               F+   +  +C   SV
Sbjct: 359 WTPFFVVHITQALCPACSV 377


>gi|239755805 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 435

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 15/97 (15%)

Query: 228 LPVPRNPLANQTVRSALAGHWDLLASGV--PPSSCAAVFLCLFLTECSHVICGIRSVVIN 285
           LP PR     Q  ++   G   ++A     P SS    FLC  LT  S +IC +R  VI 
Sbjct: 299 LPRPRWVRGRQVGKTPARGSSRIVAVPFLGPSSSPHFPFLCTHLTGASAIICLLRVTVIQ 358

Query: 286 ---------NTVGCVEAEDEAF----SIQPSGQNASP 309
                    +T GC   ED+         P   N +P
Sbjct: 359 WESLVVPPFSTYGCGPQEDDGLRFCSGASPVAGNCNP 395


>gi|114205383 secretin receptor precursor [Homo sapiens]
          Length = 440

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 15/87 (17%)

Query: 122 HLEAPGETLGLQLLRAALLGRGGDVPPGIKVKLCPVLLTEWAS-------LRRSKIVDDC 174
           HL  P + L L +L A      G +P     +LC VL   W         L R +   D 
Sbjct: 4   HLSPPLQQLLLPVLLACAAHSTGALP-----RLCDVLQVLWEEQDQCLQELSREQ-TGDL 57

Query: 175 ATQSPLEGPCGPWESSDVWSSVWELPG 201
            T+ P+ G  G W++   W S   +PG
Sbjct: 58  GTEQPVPGCEGMWDNISCWPS--SVPG 82


>gi|157278361 nuclear localized factor 2 [Homo sapiens]
          Length = 364

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 16/106 (15%)

Query: 57  RRASSKNQEPQRCFGKSSPAAVRVSNP---NAGLPRQENEWAAMCHSTENDFLAFARVWQ 113
           R  SS N++ +R  G  SPA    S+P    A LP +      +      D L  A  + 
Sbjct: 200 RSVSSGNEDEERRAGSESPARAPSSSPLSSRAPLPERLEAKGTVALGRAGDALRLAAEY- 258

Query: 114 WFFKNQALHLEAPG-ETLGLQLLRAALLGRGGDVPPGIKVKLCPVL 158
                       PG   L L+LLRA  L  G   P  ++ +L  VL
Sbjct: 259 -----------CPGTRRLRLRLLRAESLFGGAPGPRAVRCRLSLVL 293


>gi|150378533 ubiquitin specific peptidase 7 [Homo sapiens]
          Length = 1102

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 14  EPKSIQKRIKNFIWHQLDQFLVHYIKKL-EVLLMGSESDCAGT 55
           +P   +K  K+F W  LD F+ H +++L  VLL   E+   GT
Sbjct: 272 KPVGTKKLTKSFGWETLDSFMQHDVQELCRVLLDNVENKMKGT 314


>gi|239755534 PREDICTED: doublecortin domain containing 5 [Homo
           sapiens]
          Length = 1020

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 143 GGDVPPGIKVKLCPVLLTEWASLRRSKIVDDCATQ 177
           G D+ PG K + CPVL+ E   L   +I   C T+
Sbjct: 35  GPDISPGRKTQACPVLVWEGRGLWEWEISVQCLTR 69


>gi|239750000 PREDICTED: doublecortin domain containing 5 [Homo
           sapiens]
          Length = 1020

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 143 GGDVPPGIKVKLCPVLLTEWASLRRSKIVDDCATQ 177
           G D+ PG K + CPVL+ E   L   +I   C T+
Sbjct: 35  GPDISPGRKTQACPVLVWEGRGLWEWEISVQCLTR 69


>gi|239744311 PREDICTED: doublecortin domain containing 5 [Homo
           sapiens]
          Length = 1020

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 143 GGDVPPGIKVKLCPVLLTEWASLRRSKIVDDCATQ 177
           G D+ PG K + CPVL+ E   L   +I   C T+
Sbjct: 35  GPDISPGRKTQACPVLVWEGRGLWEWEISVQCLTR 69


>gi|62243734 signal transducing adaptor family member 2 isoform 1
           [Homo sapiens]
          Length = 449

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 13/81 (16%)

Query: 181 EGPCGPWESSDVWSSVWELPGYRWPPPLSKTGAACVFRCPDPARIAALPVPRNPLANQTV 240
           +GP   +E+ DV SS W  P    P  L K           PA++   PV   P+     
Sbjct: 316 DGPAVDYENQDVASSSW--PVILKPKKLPK----------PPAKLPKPPVGPKPVEKGFH 363

Query: 241 RSALAGHWDLLASGVPPSSCA 261
             A AG  +LL S  PP+S +
Sbjct: 364 HVAQAG-LELLTSSDPPTSAS 383


>gi|4758416 golgi-specific brefeldin A resistant guanine nucleotide
            exchange factor 1 [Homo sapiens]
          Length = 1859

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 200  PGYRWPPPLSKTGAACVFRCPDPARIAALPVPRNPLANQTVR 241
            PG+  PP +     AC F  P+  R A+   P +P+A+   R
Sbjct: 1751 PGHPPPPEIPSELGACDFEKPESPRAASSSSPGSPVASSPSR 1792


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.134    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,434,616
Number of Sequences: 37866
Number of extensions: 763440
Number of successful extensions: 1565
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1551
Number of HSP's gapped (non-prelim): 17
length of query: 346
length of database: 18,247,518
effective HSP length: 103
effective length of query: 243
effective length of database: 14,347,320
effective search space: 3486398760
effective search space used: 3486398760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.