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Search of human proteins with 239747390
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747390 PREDICTED: hypothetical protein XP_002346575 [Homo
sapiens]
(203 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752823 PREDICTED: similar to NADH dehydrogenase [ubiquinon... 435 e-122
gi|239747390 PREDICTED: hypothetical protein XP_002346575 [Homo ... 435 e-122
gi|239741215 PREDICTED: hypothetical protein XP_002342136 [Homo ... 435 e-122
gi|4758790 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa... 172 2e-43
gi|169212344 PREDICTED: similar to NADH dehydrogenase (ubiquinon... 160 7e-40
gi|169211738 PREDICTED: similar to NADH dehydrogenase (ubiquinon... 160 7e-40
gi|169211073 PREDICTED: similar to NADH dehydrogenase (ubiquinon... 160 7e-40
gi|239744725 PREDICTED: hypothetical protein XP_002343253 [Homo ... 32 0.28
gi|117414148 hypothetical protein LOC221322 [Homo sapiens] 29 2.4
>gi|239752823 PREDICTED: similar to NADH dehydrogenase [ubiquinone]
iron-sulfur protein 5 [Homo sapiens]
Length = 203
Score = 435 bits (1118), Expect = e-122
Identities = 203/203 (100%), Positives = 203/203 (100%)
Query: 1 MPFLDVQKRFGLNTDGWLTIQSAEQPYKIPARHHPFEKEWRECAHGIGGIWGEKECRIEY 60
MPFLDVQKRFGLNTDGWLTIQSAEQPYKIPARHHPFEKEWRECAHGIGGIWGEKECRIEY
Sbjct: 1 MPFLDVQKRFGLNTDGWLTIQSAEQPYKIPARHHPFEKEWRECAHGIGGIWGEKECRIEY 60
Query: 61 DYFIECILWQKMMRCVSTIRKQWNKLIKEGKYTPPPHHVGKGEPRLLSRVPQCWDYRMFS 120
DYFIECILWQKMMRCVSTIRKQWNKLIKEGKYTPPPHHVGKGEPRLLSRVPQCWDYRMFS
Sbjct: 61 DYFIECILWQKMMRCVSTIRKQWNKLIKEGKYTPPPHHVGKGEPRLLSRVPQCWDYRMFS 120
Query: 121 YIPFANCLSLDLDAGTQAVVDIASAPLCLALFVVLWSMAHSISHCPTAGCFSLVATSQVL 180
YIPFANCLSLDLDAGTQAVVDIASAPLCLALFVVLWSMAHSISHCPTAGCFSLVATSQVL
Sbjct: 121 YIPFANCLSLDLDAGTQAVVDIASAPLCLALFVVLWSMAHSISHCPTAGCFSLVATSQVL 180
Query: 181 RSFRATLNSCIADNSSVSQSVDH 203
RSFRATLNSCIADNSSVSQSVDH
Sbjct: 181 RSFRATLNSCIADNSSVSQSVDH 203
>gi|239747390 PREDICTED: hypothetical protein XP_002346575 [Homo
sapiens]
Length = 203
Score = 435 bits (1118), Expect = e-122
Identities = 203/203 (100%), Positives = 203/203 (100%)
Query: 1 MPFLDVQKRFGLNTDGWLTIQSAEQPYKIPARHHPFEKEWRECAHGIGGIWGEKECRIEY 60
MPFLDVQKRFGLNTDGWLTIQSAEQPYKIPARHHPFEKEWRECAHGIGGIWGEKECRIEY
Sbjct: 1 MPFLDVQKRFGLNTDGWLTIQSAEQPYKIPARHHPFEKEWRECAHGIGGIWGEKECRIEY 60
Query: 61 DYFIECILWQKMMRCVSTIRKQWNKLIKEGKYTPPPHHVGKGEPRLLSRVPQCWDYRMFS 120
DYFIECILWQKMMRCVSTIRKQWNKLIKEGKYTPPPHHVGKGEPRLLSRVPQCWDYRMFS
Sbjct: 61 DYFIECILWQKMMRCVSTIRKQWNKLIKEGKYTPPPHHVGKGEPRLLSRVPQCWDYRMFS 120
Query: 121 YIPFANCLSLDLDAGTQAVVDIASAPLCLALFVVLWSMAHSISHCPTAGCFSLVATSQVL 180
YIPFANCLSLDLDAGTQAVVDIASAPLCLALFVVLWSMAHSISHCPTAGCFSLVATSQVL
Sbjct: 121 YIPFANCLSLDLDAGTQAVVDIASAPLCLALFVVLWSMAHSISHCPTAGCFSLVATSQVL 180
Query: 181 RSFRATLNSCIADNSSVSQSVDH 203
RSFRATLNSCIADNSSVSQSVDH
Sbjct: 181 RSFRATLNSCIADNSSVSQSVDH 203
>gi|239741215 PREDICTED: hypothetical protein XP_002342136 [Homo
sapiens]
Length = 203
Score = 435 bits (1118), Expect = e-122
Identities = 203/203 (100%), Positives = 203/203 (100%)
Query: 1 MPFLDVQKRFGLNTDGWLTIQSAEQPYKIPARHHPFEKEWRECAHGIGGIWGEKECRIEY 60
MPFLDVQKRFGLNTDGWLTIQSAEQPYKIPARHHPFEKEWRECAHGIGGIWGEKECRIEY
Sbjct: 1 MPFLDVQKRFGLNTDGWLTIQSAEQPYKIPARHHPFEKEWRECAHGIGGIWGEKECRIEY 60
Query: 61 DYFIECILWQKMMRCVSTIRKQWNKLIKEGKYTPPPHHVGKGEPRLLSRVPQCWDYRMFS 120
DYFIECILWQKMMRCVSTIRKQWNKLIKEGKYTPPPHHVGKGEPRLLSRVPQCWDYRMFS
Sbjct: 61 DYFIECILWQKMMRCVSTIRKQWNKLIKEGKYTPPPHHVGKGEPRLLSRVPQCWDYRMFS 120
Query: 121 YIPFANCLSLDLDAGTQAVVDIASAPLCLALFVVLWSMAHSISHCPTAGCFSLVATSQVL 180
YIPFANCLSLDLDAGTQAVVDIASAPLCLALFVVLWSMAHSISHCPTAGCFSLVATSQVL
Sbjct: 121 YIPFANCLSLDLDAGTQAVVDIASAPLCLALFVVLWSMAHSISHCPTAGCFSLVATSQVL 180
Query: 181 RSFRATLNSCIADNSSVSQSVDH 203
RSFRATLNSCIADNSSVSQSVDH
Sbjct: 181 RSFRATLNSCIADNSSVSQSVDH 203
>gi|4758790 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa
(NADH-coenzyme Q reductase) [Homo sapiens]
Length = 106
Score = 172 bits (435), Expect = 2e-43
Identities = 79/105 (75%), Positives = 86/105 (81%)
Query: 1 MPFLDVQKRFGLNTDGWLTIQSAEQPYKIPARHHPFEKEWRECAHGIGGIWGEKECRIEY 60
MPFLD+QKRFGLN D WLTIQS EQPYK+ R H FEKEW ECAHGIG EKEC+IEY
Sbjct: 1 MPFLDIQKRFGLNIDRWLTIQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEKECKIEY 60
Query: 61 DYFIECILWQKMMRCVSTIRKQWNKLIKEGKYTPPPHHVGKGEPR 105
D F+EC+L QK MR TIRKQ +KLIKEGKYTPPPHH+GKGEPR
Sbjct: 61 DDFVECLLRQKTMRRAGTIRKQRDKLIKEGKYTPPPHHIGKGEPR 105
>gi|169212344 PREDICTED: similar to NADH dehydrogenase (ubiquinone)
Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) [Homo
sapiens]
Length = 106
Score = 160 bits (405), Expect = 7e-40
Identities = 76/105 (72%), Positives = 84/105 (80%)
Query: 1 MPFLDVQKRFGLNTDGWLTIQSAEQPYKIPARHHPFEKEWRECAHGIGGIWGEKECRIEY 60
MPFL +QKRFGLN D W TIQSAEQPYKI AR H FEKEW ECA+GI I EKEC+IE
Sbjct: 1 MPFLAIQKRFGLNIDQWWTIQSAEQPYKIAARCHAFEKEWIECAYGISVIRAEKECKIES 60
Query: 61 DYFIECILWQKMMRCVSTIRKQWNKLIKEGKYTPPPHHVGKGEPR 105
D F+EC+L QK MR TIRKQ +KLIKEGKYTPPPHH+GK EP+
Sbjct: 61 DDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYTPPPHHIGKEEPQ 105
>gi|169211738 PREDICTED: similar to NADH dehydrogenase (ubiquinone)
Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) [Homo
sapiens]
Length = 106
Score = 160 bits (405), Expect = 7e-40
Identities = 76/105 (72%), Positives = 84/105 (80%)
Query: 1 MPFLDVQKRFGLNTDGWLTIQSAEQPYKIPARHHPFEKEWRECAHGIGGIWGEKECRIEY 60
MPFL +QKRFGLN D W TIQSAEQPYKI AR H FEKEW ECA+GI I EKEC+IE
Sbjct: 1 MPFLAIQKRFGLNIDQWWTIQSAEQPYKIAARCHAFEKEWIECAYGISVIRAEKECKIES 60
Query: 61 DYFIECILWQKMMRCVSTIRKQWNKLIKEGKYTPPPHHVGKGEPR 105
D F+EC+L QK MR TIRKQ +KLIKEGKYTPPPHH+GK EP+
Sbjct: 61 DDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYTPPPHHIGKEEPQ 105
>gi|169211073 PREDICTED: similar to NADH dehydrogenase (ubiquinone)
Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) [Homo
sapiens]
Length = 106
Score = 160 bits (405), Expect = 7e-40
Identities = 76/105 (72%), Positives = 84/105 (80%)
Query: 1 MPFLDVQKRFGLNTDGWLTIQSAEQPYKIPARHHPFEKEWRECAHGIGGIWGEKECRIEY 60
MPFL +QKRFGLN D W TIQSAEQPYKI AR H FEKEW ECA+GI I EKEC+IE
Sbjct: 1 MPFLAIQKRFGLNIDQWWTIQSAEQPYKIAARCHAFEKEWIECAYGISVIRAEKECKIES 60
Query: 61 DYFIECILWQKMMRCVSTIRKQWNKLIKEGKYTPPPHHVGKGEPR 105
D F+EC+L QK MR TIRKQ +KLIKEGKYTPPPHH+GK EP+
Sbjct: 61 DDFVECLLRQKTMRRAGTIRKQQDKLIKEGKYTPPPHHIGKEEPQ 105
>gi|239744725 PREDICTED: hypothetical protein XP_002343253 [Homo
sapiens]
Length = 756
Score = 32.3 bits (72), Expect = 0.28
Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 7/98 (7%)
Query: 70 QKMMRCVSTIRKQWNKLIKEGKYTPPPHHVGKGEPRLLSRVPQCWDYRMFSYIPFANCLS 129
+ ++RC S K+ + TP P GEP + WD R + +
Sbjct: 55 KSVIRCDSVSEKENKFPLPALALTPTPFSK-TGEPDITGGAALEWDGRALEVVEHVH--- 110
Query: 130 LDLDAGTQAVVDIASAPLCLALFVVLWSMAHSISHCPT 167
D G V+ A APLC VLW S CP+
Sbjct: 111 ---DRGKVEVLHTALAPLCQRQAQVLWEERMVGSGCPS 145
>gi|117414148 hypothetical protein LOC221322 [Homo sapiens]
Length = 1257
Score = 29.3 bits (64), Expect = 2.4
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 104 PRLLSRVPQCWDYRMFSYIPFANCLSLDL--DAGTQAVVDIASAPLCLAL 151
PRLL + + + MFS P NC D+ +AG + D+ LCL +
Sbjct: 888 PRLLEKSDNPYPWPMFSSYPLPNCYLSDITRNAGIKQDNDLDKLLLCLKI 937
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.137 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,645,421
Number of Sequences: 37866
Number of extensions: 385861
Number of successful extensions: 1069
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1062
Number of HSP's gapped (non-prelim): 9
length of query: 203
length of database: 18,247,518
effective HSP length: 97
effective length of query: 106
effective length of database: 14,574,516
effective search space: 1544898696
effective search space used: 1544898696
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.