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Search of human proteins with 239746940
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746940 PREDICTED: similar to hCG1736317 isoform 2 [Homo
sapiens]
(224 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239746940 PREDICTED: similar to hCG1736317 isoform 2 [Homo sa... 450 e-127
gi|239746938 PREDICTED: similar to hCG1736317 isoform 1 [Homo sa... 439 e-123
gi|169217258 PREDICTED: similar to hCG1736317 [Homo sapiens] 424 e-119
gi|72534700 hypothetical protein LOC54967 isoform 1 [Homo sapiens] 343 5e-95
gi|8923493 hypothetical protein LOC54967 isoform 2 [Homo sapiens] 343 5e-95
gi|169217256 PREDICTED: similar to chromosome X open reading fra... 335 2e-92
gi|169216878 PREDICTED: similar to chromosome X open reading fra... 335 2e-92
gi|14251207 MOV10-like 1 [Homo sapiens] 208 3e-54
gi|40548408 p30 DBC protein [Homo sapiens] 36 0.030
gi|24432106 p30 DBC protein [Homo sapiens] 36 0.030
gi|46852388 cell-cycle and apoptosis regulatory protein 1 [Homo ... 31 0.75
gi|132814467 glutamyl aminopeptidase [Homo sapiens] 29 3.7
gi|227499621 solute carrier family 27 (fatty acid transporter), ... 28 4.9
gi|227499619 solute carrier family 27 (fatty acid transporter), ... 28 4.9
gi|20373179 G protein-coupled receptor 73 [Homo sapiens] 28 6.3
gi|6005824 Sec23-interacting protein p125 [Homo sapiens] 28 8.3
>gi|239746940 PREDICTED: similar to hCG1736317 isoform 2 [Homo
sapiens]
Length = 224
Score = 450 bits (1157), Expect = e-127
Identities = 224/224 (100%), Positives = 224/224 (100%)
Query: 1 MLRLLRRALAFFHSDTQLTTVQGVVTSFCGDYGVIDESIYFSSDVVTGNVPLKVGQKVNV 60
MLRLLRRALAFFHSDTQLTTVQGVVTSFCGDYGVIDESIYFSSDVVTGNVPLKVGQKVNV
Sbjct: 1 MLRLLRRALAFFHSDTQLTTVQGVVTSFCGDYGVIDESIYFSSDVVTGNVPLKVGQKVNV 60
Query: 61 VVEEDKILYGLRAIKVDVVPHPLNDDGPSDSKIRVLNGCVTSISEDTVYISNIIYFPMDI 120
VVEEDKILYGLRAIKVDVVPHPLNDDGPSDSKIRVLNGCVTSISEDTVYISNIIYFPMDI
Sbjct: 61 VVEEDKILYGLRAIKVDVVPHPLNDDGPSDSKIRVLNGCVTSISEDTVYISNIIYFPMDI 120
Query: 121 VSEDFVPYKGNWLKVEYSTEPGFLNFKASSVKPTRCIHAEAVRITHIRGRSGVIKNTIFF 180
VSEDFVPYKGNWLKVEYSTEPGFLNFKASSVKPTRCIHAEAVRITHIRGRSGVIKNTIFF
Sbjct: 121 VSEDFVPYKGNWLKVEYSTEPGFLNFKASSVKPTRCIHAEAVRITHIRGRSGVIKNTIFF 180
Query: 181 TLDSVKLPDGYVPQVDDIVNVVMVESIQFCFKWRAVSITPVQKS 224
TLDSVKLPDGYVPQVDDIVNVVMVESIQFCFKWRAVSITPVQKS
Sbjct: 181 TLDSVKLPDGYVPQVDDIVNVVMVESIQFCFKWRAVSITPVQKS 224
>gi|239746938 PREDICTED: similar to hCG1736317 isoform 1 [Homo
sapiens]
Length = 242
Score = 439 bits (1128), Expect = e-123
Identities = 224/242 (92%), Positives = 224/242 (92%), Gaps = 18/242 (7%)
Query: 1 MLRLLRRALAFFHS------------------DTQLTTVQGVVTSFCGDYGVIDESIYFS 42
MLRLLRRALAFFHS DTQLTTVQGVVTSFCGDYGVIDESIYFS
Sbjct: 1 MLRLLRRALAFFHSTAHPTEQQGPQQQGLPEGDTQLTTVQGVVTSFCGDYGVIDESIYFS 60
Query: 43 SDVVTGNVPLKVGQKVNVVVEEDKILYGLRAIKVDVVPHPLNDDGPSDSKIRVLNGCVTS 102
SDVVTGNVPLKVGQKVNVVVEEDKILYGLRAIKVDVVPHPLNDDGPSDSKIRVLNGCVTS
Sbjct: 61 SDVVTGNVPLKVGQKVNVVVEEDKILYGLRAIKVDVVPHPLNDDGPSDSKIRVLNGCVTS 120
Query: 103 ISEDTVYISNIIYFPMDIVSEDFVPYKGNWLKVEYSTEPGFLNFKASSVKPTRCIHAEAV 162
ISEDTVYISNIIYFPMDIVSEDFVPYKGNWLKVEYSTEPGFLNFKASSVKPTRCIHAEAV
Sbjct: 121 ISEDTVYISNIIYFPMDIVSEDFVPYKGNWLKVEYSTEPGFLNFKASSVKPTRCIHAEAV 180
Query: 163 RITHIRGRSGVIKNTIFFTLDSVKLPDGYVPQVDDIVNVVMVESIQFCFKWRAVSITPVQ 222
RITHIRGRSGVIKNTIFFTLDSVKLPDGYVPQVDDIVNVVMVESIQFCFKWRAVSITPVQ
Sbjct: 181 RITHIRGRSGVIKNTIFFTLDSVKLPDGYVPQVDDIVNVVMVESIQFCFKWRAVSITPVQ 240
Query: 223 KS 224
KS
Sbjct: 241 KS 242
>gi|169217258 PREDICTED: similar to hCG1736317 [Homo sapiens]
Length = 235
Score = 424 bits (1089), Expect = e-119
Identities = 210/210 (100%), Positives = 210/210 (100%)
Query: 15 DTQLTTVQGVVTSFCGDYGVIDESIYFSSDVVTGNVPLKVGQKVNVVVEEDKILYGLRAI 74
DTQLTTVQGVVTSFCGDYGVIDESIYFSSDVVTGNVPLKVGQKVNVVVEEDKILYGLRAI
Sbjct: 26 DTQLTTVQGVVTSFCGDYGVIDESIYFSSDVVTGNVPLKVGQKVNVVVEEDKILYGLRAI 85
Query: 75 KVDVVPHPLNDDGPSDSKIRVLNGCVTSISEDTVYISNIIYFPMDIVSEDFVPYKGNWLK 134
KVDVVPHPLNDDGPSDSKIRVLNGCVTSISEDTVYISNIIYFPMDIVSEDFVPYKGNWLK
Sbjct: 86 KVDVVPHPLNDDGPSDSKIRVLNGCVTSISEDTVYISNIIYFPMDIVSEDFVPYKGNWLK 145
Query: 135 VEYSTEPGFLNFKASSVKPTRCIHAEAVRITHIRGRSGVIKNTIFFTLDSVKLPDGYVPQ 194
VEYSTEPGFLNFKASSVKPTRCIHAEAVRITHIRGRSGVIKNTIFFTLDSVKLPDGYVPQ
Sbjct: 146 VEYSTEPGFLNFKASSVKPTRCIHAEAVRITHIRGRSGVIKNTIFFTLDSVKLPDGYVPQ 205
Query: 195 VDDIVNVVMVESIQFCFKWRAVSITPVQKS 224
VDDIVNVVMVESIQFCFKWRAVSITPVQKS
Sbjct: 206 VDDIVNVVMVESIQFCFKWRAVSITPVQKS 235
Score = 32.7 bits (73), Expect = 0.26
Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 24/150 (16%)
Query: 14 SDTQLTTVQGVVTSFCGDYGVIDESIYFSSDVVTGNVPLKVGQKVNVVVEEDKILYGLRA 73
SD+++ + G VTS D I IYF D+V+ ED + Y
Sbjct: 100 SDSKIRVLNGCVTSISEDTVYISNIIYFPMDIVS----------------EDFVPYKGNW 143
Query: 74 IKVDVVPHP--LNDDGPSDSKIRVLNG---CVTSISEDTVYISNIIYFPMDIVS--EDFV 126
+KV+ P LN S R ++ +T I + I N I+F +D V + +V
Sbjct: 144 LKVEYSTEPGFLNFKASSVKPTRCIHAEAVRITHIRGRSGVIKNTIFFTLDSVKLPDGYV 203
Query: 127 PYKGNWLKVEYSTEPGF-LNFKASSVKPTR 155
P + + V F ++A S+ P +
Sbjct: 204 PQVDDIVNVVMVESIQFCFKWRAVSITPVQ 233
>gi|72534700 hypothetical protein LOC54967 isoform 1 [Homo sapiens]
Length = 264
Score = 343 bits (881), Expect = 5e-95
Identities = 182/242 (75%), Positives = 193/242 (79%), Gaps = 18/242 (7%)
Query: 1 MLRLLRRALAFF------------------HSDTQLTTVQGVVTSFCGDYGVIDESIYFS 42
MLRLLR ALAF+ DTQLTTVQGVVTSFCGDYG+IDESIYFS
Sbjct: 1 MLRLLRLALAFYGRTADPAERQGPQQQGLPQGDTQLTTVQGVVTSFCGDYGMIDESIYFS 60
Query: 43 SDVVTGNVPLKVGQKVNVVVEEDKILYGLRAIKVDVVPHPLNDDGPSDSKIRVLNGCVTS 102
SDVVTGNVPLKVGQKVNVVVEEDK YGLRAIKVDVVP L GPSDS RVL GCVTS
Sbjct: 61 SDVVTGNVPLKVGQKVNVVVEEDKPHYGLRAIKVDVVPRHLYGAGPSDSGTRVLIGCVTS 120
Query: 103 ISEDTVYISNIIYFPMDIVSEDFVPYKGNWLKVEYSTEPGFLNFKASSVKPTRCIHAEAV 162
I+ED +YISN IYF + IVSEDFVPYKG+ L+VEYSTEPG N KA+SVKP RCIH E V
Sbjct: 121 INEDNIYISNSIYFSIAIVSEDFVPYKGDLLEVEYSTEPGISNIKATSVKPIRCIHTEEV 180
Query: 163 RITHIRGRSGVIKNTIFFTLDSVKLPDGYVPQVDDIVNVVMVESIQFCFKWRAVSITPVQ 222
IT + GR+GVI TIFFTLDSVKLPDGYVPQVDDIVNVVMVESIQFCF WRA+SITPV
Sbjct: 181 CITSVHGRNGVIDYTIFFTLDSVKLPDGYVPQVDDIVNVVMVESIQFCFIWRAISITPVH 240
Query: 223 KS 224
KS
Sbjct: 241 KS 242
>gi|8923493 hypothetical protein LOC54967 isoform 2 [Homo sapiens]
Length = 242
Score = 343 bits (881), Expect = 5e-95
Identities = 182/242 (75%), Positives = 193/242 (79%), Gaps = 18/242 (7%)
Query: 1 MLRLLRRALAFF------------------HSDTQLTTVQGVVTSFCGDYGVIDESIYFS 42
MLRLLR ALAF+ DTQLTTVQGVVTSFCGDYG+IDESIYFS
Sbjct: 1 MLRLLRLALAFYGRTADPAERQGPQQQGLPQGDTQLTTVQGVVTSFCGDYGMIDESIYFS 60
Query: 43 SDVVTGNVPLKVGQKVNVVVEEDKILYGLRAIKVDVVPHPLNDDGPSDSKIRVLNGCVTS 102
SDVVTGNVPLKVGQKVNVVVEEDK YGLRAIKVDVVP L GPSDS RVL GCVTS
Sbjct: 61 SDVVTGNVPLKVGQKVNVVVEEDKPHYGLRAIKVDVVPRHLYGAGPSDSGTRVLIGCVTS 120
Query: 103 ISEDTVYISNIIYFPMDIVSEDFVPYKGNWLKVEYSTEPGFLNFKASSVKPTRCIHAEAV 162
I+ED +YISN IYF + IVSEDFVPYKG+ L+VEYSTEPG N KA+SVKP RCIH E V
Sbjct: 121 INEDNIYISNSIYFSIAIVSEDFVPYKGDLLEVEYSTEPGISNIKATSVKPIRCIHTEEV 180
Query: 163 RITHIRGRSGVIKNTIFFTLDSVKLPDGYVPQVDDIVNVVMVESIQFCFKWRAVSITPVQ 222
IT + GR+GVI TIFFTLDSVKLPDGYVPQVDDIVNVVMVESIQFCF WRA+SITPV
Sbjct: 181 CITSVHGRNGVIDYTIFFTLDSVKLPDGYVPQVDDIVNVVMVESIQFCFIWRAISITPVH 240
Query: 223 KS 224
KS
Sbjct: 241 KS 242
>gi|169217256 PREDICTED: similar to chromosome X open reading frame
48 [Homo sapiens]
Length = 224
Score = 335 bits (858), Expect = 2e-92
Identities = 169/197 (85%), Positives = 175/197 (88%)
Query: 28 FCGDYGVIDESIYFSSDVVTGNVPLKVGQKVNVVVEEDKILYGLRAIKVDVVPHPLNDDG 87
FCGDYG+IDESIYFSSDVVTGNVPLKVGQKVNVVVEEDKILYGLRAIKVDVVP L G
Sbjct: 6 FCGDYGMIDESIYFSSDVVTGNVPLKVGQKVNVVVEEDKILYGLRAIKVDVVPRHLYGAG 65
Query: 88 PSDSKIRVLNGCVTSISEDTVYISNIIYFPMDIVSEDFVPYKGNWLKVEYSTEPGFLNFK 147
PSDS RVL GCVTSI ED +YISN IYF +DIVSEDFVPYKGNWLKVEYSTEPGF NFK
Sbjct: 66 PSDSGTRVLIGCVTSICEDIIYISNCIYFFIDIVSEDFVPYKGNWLKVEYSTEPGFSNFK 125
Query: 148 ASSVKPTRCIHAEAVRITHIRGRSGVIKNTIFFTLDSVKLPDGYVPQVDDIVNVVMVESI 207
ASSVK T CIHAEAV IT + GR+GVI TIFFTLDSVKLPDGYVPQVDDIVNVVMVESI
Sbjct: 126 ASSVKSTHCIHAEAVCITSVHGRNGVIDYTIFFTLDSVKLPDGYVPQVDDIVNVVMVESI 185
Query: 208 QFCFKWRAVSITPVQKS 224
QFCF WRA+SITPV KS
Sbjct: 186 QFCFIWRAISITPVHKS 202
Score = 31.2 bits (69), Expect = 0.75
Identities = 33/117 (28%), Positives = 47/117 (40%), Gaps = 15/117 (12%)
Query: 14 SDTQLTTVQGVVTSFCGDYGVIDESIYFSSDVVTGN-VPLKVGQKVNVVVEEDKILYGLR 72
SD+ + G VTS C D I IYF D+V+ + VP K G + V + +
Sbjct: 67 SDSGTRVLIGCVTSICEDIIYISNCIYFFIDIVSEDFVPYK-GNWLKVEYSTEPGFSNFK 125
Query: 73 AIKVDVVPHPLNDDGPSDSKIRVLNGCVTSISEDTVYISNIIYFPMDIVS--EDFVP 127
A V S I C+TS+ I I+F +D V + +VP
Sbjct: 126 ASSV-----------KSTHCIHAEAVCITSVHGRNGVIDYTIFFTLDSVKLPDGYVP 171
>gi|169216878 PREDICTED: similar to chromosome X open reading frame
48 [Homo sapiens]
Length = 224
Score = 335 bits (858), Expect = 2e-92
Identities = 169/197 (85%), Positives = 175/197 (88%)
Query: 28 FCGDYGVIDESIYFSSDVVTGNVPLKVGQKVNVVVEEDKILYGLRAIKVDVVPHPLNDDG 87
FCGDYG+IDESIYFSSDVVTGNVPLKVGQKVNVVVEEDKILYGLRAIKVDVVP L G
Sbjct: 6 FCGDYGMIDESIYFSSDVVTGNVPLKVGQKVNVVVEEDKILYGLRAIKVDVVPRHLYGAG 65
Query: 88 PSDSKIRVLNGCVTSISEDTVYISNIIYFPMDIVSEDFVPYKGNWLKVEYSTEPGFLNFK 147
PSDS RVL GCVTSI ED +YISN IYF +DIVSEDFVPYKGNWLKVEYSTEPGF NFK
Sbjct: 66 PSDSGTRVLIGCVTSICEDIIYISNCIYFFIDIVSEDFVPYKGNWLKVEYSTEPGFSNFK 125
Query: 148 ASSVKPTRCIHAEAVRITHIRGRSGVIKNTIFFTLDSVKLPDGYVPQVDDIVNVVMVESI 207
ASSVK T CIHAEAV IT + GR+GVI TIFFTLDSVKLPDGYVPQVDDIVNVVMVESI
Sbjct: 126 ASSVKSTHCIHAEAVCITSVHGRNGVIDYTIFFTLDSVKLPDGYVPQVDDIVNVVMVESI 185
Query: 208 QFCFKWRAVSITPVQKS 224
QFCF WRA+SITPV KS
Sbjct: 186 QFCFIWRAISITPVHKS 202
Score = 31.2 bits (69), Expect = 0.75
Identities = 33/117 (28%), Positives = 47/117 (40%), Gaps = 15/117 (12%)
Query: 14 SDTQLTTVQGVVTSFCGDYGVIDESIYFSSDVVTGN-VPLKVGQKVNVVVEEDKILYGLR 72
SD+ + G VTS C D I IYF D+V+ + VP K G + V + +
Sbjct: 67 SDSGTRVLIGCVTSICEDIIYISNCIYFFIDIVSEDFVPYK-GNWLKVEYSTEPGFSNFK 125
Query: 73 AIKVDVVPHPLNDDGPSDSKIRVLNGCVTSISEDTVYISNIIYFPMDIVS--EDFVP 127
A V S I C+TS+ I I+F +D V + +VP
Sbjct: 126 ASSV-----------KSTHCIHAEAVCITSVHGRNGVIDYTIFFTLDSVKLPDGYVP 171
>gi|14251207 MOV10-like 1 [Homo sapiens]
Length = 1211
Score = 208 bits (530), Expect = 3e-54
Identities = 109/214 (50%), Positives = 145/214 (67%), Gaps = 5/214 (2%)
Query: 15 DTQLTTVQGVVTSFCGDYGVIDESIYFSSDVVTGNVPLKVGQKVNVVVEEDKILYGLRAI 74
DT+L TV+GVVT +C DYG+ID+ IYFSSD VT V L VGQ+V VVEE+K+ GL+AI
Sbjct: 34 DTKLKTVRGVVTRYCSDYGMIDDMIYFSSDAVTSRVLLNVGQEVIAVVEENKVSNGLKAI 93
Query: 75 KVDVVPHPLNDDG-----PSDSKIRVLNGCVTSISEDTVYISNIIYFPMDIVSEDFVPYK 129
+V+ V DD PSD RVL GCVTS+ E IS YF ++ V E F P K
Sbjct: 94 RVEAVSDKWEDDSRNHGSPSDCGPRVLIGCVTSLVEGAGCISQTTYFSLESVCEGFEPCK 153
Query: 130 GNWLKVEYSTEPGFLNFKASSVKPTRCIHAEAVRITHIRGRSGVIKNTIFFTLDSVKLPD 189
G+W++ EY PG + +A+SVKP R + V I+ + GR+GV++ +IFFTLDS+KLPD
Sbjct: 154 GDWVEAEYRIRPGTWSSEATSVKPLRYKRVDKVCISSLCGRNGVLEESIFFTLDSLKLPD 213
Query: 190 GYVPQVDDIVNVVMVESIQFCFKWRAVSITPVQK 223
GY P+ D+VN V+VES Q C+ WRA+ +T V++
Sbjct: 214 GYTPRRGDVVNAVVVESSQSCYVWRALCMTLVKR 247
>gi|40548408 p30 DBC protein [Homo sapiens]
Length = 923
Score = 35.8 bits (81), Expect = 0.030
Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 23 GVVTSFCGDYGVIDESIYFSSDVVTGNVPLKVGQKVNV 60
G+VTS +GV+DE ++F VV G +P ++G+KV V
Sbjct: 60 GIVTSLHDYFGVVDEEVFFQLSVVKGRLP-QLGEKVLV 96
>gi|24432106 p30 DBC protein [Homo sapiens]
Length = 923
Score = 35.8 bits (81), Expect = 0.030
Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 23 GVVTSFCGDYGVIDESIYFSSDVVTGNVPLKVGQKVNV 60
G+VTS +GV+DE ++F VV G +P ++G+KV V
Sbjct: 60 GIVTSLHDYFGVVDEEVFFQLSVVKGRLP-QLGEKVLV 96
>gi|46852388 cell-cycle and apoptosis regulatory protein 1 [Homo
sapiens]
Length = 1150
Score = 31.2 bits (69), Expect = 0.75
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 164 ITHIRGRSGVIKNTIFFTLDSVKLPDGYVPQVDDIVNVVMVESIQFCFKWRAVSI 218
+T + G + +FF L +VK G PQV D V V + FKW A I
Sbjct: 154 VTKLHDTFGFVDEDVFFQLSAVK---GKTPQVGDRVLVEATYNPNMPFKWNAQRI 205
Score = 30.8 bits (68), Expect = 0.98
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 23 GVVTSFCGDYGVIDESIYFSSDVVTGNVPLKVGQKVNV 60
GVVT +G +DE ++F V G P +VG +V V
Sbjct: 152 GVVTKLHDTFGFVDEDVFFQLSAVKGKTP-QVGDRVLV 188
>gi|132814467 glutamyl aminopeptidase [Homo sapiens]
Length = 957
Score = 28.9 bits (63), Expect = 3.7
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 42 SSDVVTGNVPLKVGQKVNVVVEEDKILYGLRAIK 75
S + ++ N L+ QK ++ E++K+LYGL ++K
Sbjct: 794 SGNEISWNYTLEQYQKTSLAQEKEKLLYGLASVK 827
>gi|227499621 solute carrier family 27 (fatty acid transporter),
member 2 isoform 2 [Homo sapiens]
Length = 567
Score = 28.5 bits (62), Expect = 4.9
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 173 VIKNTIFFTLDSVKLPDGYVPQVDDIVNVVMVESIQ 208
VIK+ ++F D+ K+ YVP +DI N + ++++
Sbjct: 534 VIKDALYFLDDTAKM---YVPMTEDIYNAISAKTLK 566
>gi|227499619 solute carrier family 27 (fatty acid transporter),
member 2 isoform 1 [Homo sapiens]
Length = 620
Score = 28.5 bits (62), Expect = 4.9
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 173 VIKNTIFFTLDSVKLPDGYVPQVDDIVNVVMVESIQ 208
VIK+ ++F D+ K+ YVP +DI N + ++++
Sbjct: 587 VIKDALYFLDDTAKM---YVPMTEDIYNAISAKTLK 619
>gi|20373179 G protein-coupled receptor 73 [Homo sapiens]
Length = 393
Score = 28.1 bits (61), Expect = 6.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 10 AFFHSDTQLTTVQGVVTSFCGDYGVIDESIYFSS 43
A+F ++T L V+ FCG +D+ +Y+ S
Sbjct: 198 AYFTTETVLVIVKSQEKIFCGQIWPVDQQLYYKS 231
>gi|6005824 Sec23-interacting protein p125 [Homo sapiens]
Length = 1000
Score = 27.7 bits (60), Expect = 8.3
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 170 RSGVIKNTIFFTLDSVKLPDGYVPQVDDIVNVV 202
R V+K I LD + PDG +PQVD +V VV
Sbjct: 420 RPRVVKRGIDDNLDEI--PDGEMPQVDHLVFVV 450
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.139 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,921,261
Number of Sequences: 37866
Number of extensions: 329974
Number of successful extensions: 499
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 460
Number of HSP's gapped (non-prelim): 23
length of query: 224
length of database: 18,247,518
effective HSP length: 98
effective length of query: 126
effective length of database: 14,536,650
effective search space: 1831617900
effective search space used: 1831617900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.