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Search of human proteins with 116812630
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116812630 short chain dehydrogenase/reductase family 39U,
member 1 [Homo sapiens]
(293 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|116812630 short chain dehydrogenase/reductase family 39U, mem... 587 e-168
gi|42516563 UDP-glucuronate decarboxylase 1 [Homo sapiens] 37 0.021
gi|22538446 tumor protein p53 inducible protein 3 [Homo sapiens] 30 1.9
gi|22538444 tumor protein p53 inducible protein 3 [Homo sapiens] 30 1.9
gi|161019170 mucin 5AC [Homo sapiens] 29 5.6
gi|239750685 PREDICTED: hypothetical protein XP_002347506 [Homo ... 29 5.6
gi|239744995 PREDICTED: hypothetical protein XP_002343325 [Homo ... 29 5.6
gi|19923817 peroxisomal trans-2-enoyl-CoA reductase [Homo sapiens] 29 5.6
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 29 5.6
gi|34101290 Fas apoptotic inhibitory molecule 2 [Homo sapiens] 29 5.6
gi|40254992 carbonic reductase 4 [Homo sapiens] 29 5.6
gi|28557800 UDP glycosyltransferase 3 family, polypeptide A2 [Ho... 28 7.3
gi|42544153 leukocyte receptor tyrosine kinase isoform 1 precurs... 28 9.6
gi|46249416 leukocyte receptor tyrosine kinase isoform 2 precurs... 28 9.6
>gi|116812630 short chain dehydrogenase/reductase family 39U, member
1 [Homo sapiens]
Length = 293
Score = 587 bits (1513), Expect = e-168
Identities = 293/293 (100%), Positives = 293/293 (100%)
Query: 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGRITWDELAASGLPSCDAAVNLAG 60
MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGRITWDELAASGLPSCDAAVNLAG
Sbjct: 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGRITWDELAASGLPSCDAAVNLAG 60
Query: 61 ENILNPLRRWNETFQKEVIGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSLTAEY 120
ENILNPLRRWNETFQKEVIGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSLTAEY
Sbjct: 61 ENILNPLRRWNETFQKEVIGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSLTAEY 120
Query: 121 DEDSPGGDFDFFSNLVTKWEAAARLPGDSTRQVVVRSGVVLGRGGGAMGHMLLPFRLGLG 180
DEDSPGGDFDFFSNLVTKWEAAARLPGDSTRQVVVRSGVVLGRGGGAMGHMLLPFRLGLG
Sbjct: 121 DEDSPGGDFDFFSNLVTKWEAAARLPGDSTRQVVVRSGVVLGRGGGAMGHMLLPFRLGLG 180
Query: 181 GPIGSGHQFFPWIHIGDLAGILTHALEANHVHGVLNGVAPSSATNAEFAQTLGAALGRRA 240
GPIGSGHQFFPWIHIGDLAGILTHALEANHVHGVLNGVAPSSATNAEFAQTLGAALGRRA
Sbjct: 181 GPIGSGHQFFPWIHIGDLAGILTHALEANHVHGVLNGVAPSSATNAEFAQTLGAALGRRA 240
Query: 241 FIPLPSAVVQAVFGRQRAIMLLEGQKVIPQRTLATGYQYSFPELGAALKEIVA 293
FIPLPSAVVQAVFGRQRAIMLLEGQKVIPQRTLATGYQYSFPELGAALKEIVA
Sbjct: 241 FIPLPSAVVQAVFGRQRAIMLLEGQKVIPQRTLATGYQYSFPELGAALKEIVA 293
>gi|42516563 UDP-glucuronate decarboxylase 1 [Homo sapiens]
Length = 420
Score = 37.0 bits (84), Expect = 0.021
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 2 RVLVGGGTGFIGTALTQLLNARGHEVTLV 30
R+L+ GG GF+G+ LT L GHEVT+V
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVV 118
>gi|22538446 tumor protein p53 inducible protein 3 [Homo sapiens]
Length = 332
Score = 30.4 bits (67), Expect = 1.9
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 13/107 (12%)
Query: 141 AAARLPGDSTRQVV---------VRSGVVLGRGGGAMGHMLLPFRL-GLGGPIGSGHQFF 190
A A LPG Q V + G+ L + L F+L L G + +G +
Sbjct: 86 AMALLPGGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGD--Y 143
Query: 191 PWIHIGDLAGILTHALEANHVHGVLNGVAPSSATNAEFAQTLGAALG 237
IH G L+G+ T A++ + G + V S + A+ LGAA G
Sbjct: 144 VLIHAG-LSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAG 189
>gi|22538444 tumor protein p53 inducible protein 3 [Homo sapiens]
Length = 332
Score = 30.4 bits (67), Expect = 1.9
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 13/107 (12%)
Query: 141 AAARLPGDSTRQVV---------VRSGVVLGRGGGAMGHMLLPFRL-GLGGPIGSGHQFF 190
A A LPG Q V + G+ L + L F+L L G + +G +
Sbjct: 86 AMALLPGGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGD--Y 143
Query: 191 PWIHIGDLAGILTHALEANHVHGVLNGVAPSSATNAEFAQTLGAALG 237
IH G L+G+ T A++ + G + V S + A+ LGAA G
Sbjct: 144 VLIHAG-LSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAG 189
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 28.9 bits (63), Expect = 5.6
Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 17/94 (18%)
Query: 81 SRLETTQLLAKAITKAP---------QPPKAWVLVTGVAYYQPSLTAEYDEDSPGGDFDF 131
S+ T+ LL + T AP +P AW +Y P + GGDFD
Sbjct: 4576 SKTRTSTLLPSSPTSAPITTVVTTGCEPQCAWSEWLDYSYPMPGPS--------GGDFDT 4627
Query: 132 FSNLVTKWEAAARLPGDSTRQVVVRSGVVLGRGG 165
+SN+ A P + + GV LG G
Sbjct: 4628 YSNIRAAGGAVCEQPLGLECRAQAQPGVPLGELG 4661
>gi|239750685 PREDICTED: hypothetical protein XP_002347506 [Homo
sapiens]
Length = 684
Score = 28.9 bits (63), Expect = 5.6
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 158 GVVLGRGGGAMGHMLLPFRLGLGG-PIGSGHQFFPWIHIGDLAGILTHALEANHVHGV-L 215
G+++GRG G + + L R+ + G P+ +PW+ + + G+ A H G+ L
Sbjct: 457 GLIMGRGAGKVSPLGLRARVKIAGTPVS-----WPWLALAHVVGVGLMVDGAEHQAGLGL 511
Query: 216 NGVAP 220
G AP
Sbjct: 512 RGGAP 516
>gi|239744995 PREDICTED: hypothetical protein XP_002343325 [Homo
sapiens]
Length = 909
Score = 28.9 bits (63), Expect = 5.6
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 158 GVVLGRGGGAMGHMLLPFRLGLGG-PIGSGHQFFPWIHIGDLAGILTHALEANHVHGV-L 215
G+++GRG G + + L R+ + G P+ +PW+ + + G+ A H G+ L
Sbjct: 457 GLIMGRGAGKVSPLGLRARVKIAGTPVS-----WPWLALAHVVGVGLMVDGAEHQAGLGL 511
Query: 216 NGVAP 220
G AP
Sbjct: 512 RGGAP 516
>gi|19923817 peroxisomal trans-2-enoyl-CoA reductase [Homo
sapiens]
Length = 303
Score = 28.9 bits (63), Expect = 5.6
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 3 VLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGRITWDELAASGLPSCDAAV-----N 57
++ GG TG IG A+ + L G V + SRK + DEL A+ P+ A V N
Sbjct: 22 IVTGGATG-IGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCN 80
Query: 58 LAGENILNPL 67
+ E +N L
Sbjct: 81 IRNEEEVNNL 90
>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
Length = 5765
Score = 28.9 bits (63), Expect = 5.6
Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 17/94 (18%)
Query: 81 SRLETTQLLAKAITKAP---------QPPKAWVLVTGVAYYQPSLTAEYDEDSPGGDFDF 131
S+ T+ LL + T AP +P AW +Y P + GGDFD
Sbjct: 4106 SKTRTSTLLPSSPTSAPITTVVTTGCEPQCAWSEWLDYSYPMPGPS--------GGDFDT 4157
Query: 132 FSNLVTKWEAAARLPGDSTRQVVVRSGVVLGRGG 165
+SN+ A P + + GV LG G
Sbjct: 4158 YSNIRAAGGAVCEQPLGLECRAQAQPGVPLGELG 4191
>gi|34101290 Fas apoptotic inhibitory molecule 2 [Homo sapiens]
Length = 316
Score = 28.9 bits (63), Expect = 5.6
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 97 PQPPKAWVLVTGVAYYQPSLTAEYDEDSPGGDFDFFS 133
P P A L AY PS ++ YD P GD + F+
Sbjct: 53 PPAPTAVPLHPSWAYVDPSSSSSYDNGFPTGDHELFT 89
>gi|40254992 carbonic reductase 4 [Homo sapiens]
Length = 237
Score = 28.9 bits (63), Expect = 5.6
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 5 VGGGTGFIGTALTQLLNARGHEVTLVSR-----KPGPGRITWDELAASGLPSCDAAVNLA 59
V GG+ IG A+ QL+ +G+ + +++R K G + D LA SCD A
Sbjct: 7 VFGGSRGIGRAVAQLMARKGYRLAVIARNLEGAKAAAGDLGGDHLAF----SCDVAKEHD 62
Query: 60 GENILNPLRR 69
+N L +
Sbjct: 63 VQNTFEELEK 72
>gi|28557800 UDP glycosyltransferase 3 family, polypeptide A2
[Homo sapiens]
Length = 523
Score = 28.5 bits (62), Expect = 7.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 5 VGGGTGFIGTALTQLLNARGHEVTLVSRKPGP 36
VGG + ++Q+L GH VT+++ K GP
Sbjct: 31 VGGSHYLLMDRVSQILQDHGHNVTMLNHKRGP 62
>gi|42544153 leukocyte receptor tyrosine kinase isoform 1 precursor
[Homo sapiens]
Length = 864
Score = 28.1 bits (61), Expect = 9.6
Identities = 33/136 (24%), Positives = 54/136 (39%), Gaps = 20/136 (14%)
Query: 32 RKPGPGRITWDELAASGLPSCDAAVNLAGENILNPLRRWNETFQKEVIGSRLETTQLLAK 91
+ PGP + +A S L + + + G IL ++W + + LE ++L
Sbjct: 420 KPPGPLVLMVAVVATSTL----SLLMVCGVLILVKQKKWQGLQEMRLPSPELELSKLRTS 475
Query: 92 AITKAPQ---------PPKAWVLVTGVAYYQPSLTAEYDEDSPGGDFDFFSNLVTKWEAA 142
AI AP P ++W L GV P+ G + + LV
Sbjct: 476 AIRTAPNPYYCQVGLGPAQSWPLPPGVTEVSPANVTLLRALGHGAFGEVYEGLV------ 529
Query: 143 ARLPGDST-RQVVVRS 157
LPGDS+ QV +++
Sbjct: 530 IGLPGDSSPLQVAIKT 545
>gi|46249416 leukocyte receptor tyrosine kinase isoform 2 precursor
[Homo sapiens]
Length = 803
Score = 28.1 bits (61), Expect = 9.6
Identities = 33/136 (24%), Positives = 54/136 (39%), Gaps = 20/136 (14%)
Query: 32 RKPGPGRITWDELAASGLPSCDAAVNLAGENILNPLRRWNETFQKEVIGSRLETTQLLAK 91
+ PGP + +A S L + + + G IL ++W + + LE ++L
Sbjct: 359 KPPGPLVLMVAVVATSTL----SLLMVCGVLILVKQKKWQGLQEMRLPSPELELSKLRTS 414
Query: 92 AITKAPQ---------PPKAWVLVTGVAYYQPSLTAEYDEDSPGGDFDFFSNLVTKWEAA 142
AI AP P ++W L GV P+ G + + LV
Sbjct: 415 AIRTAPNPYYCQVGLGPAQSWPLPPGVTEVSPANVTLLRALGHGAFGEVYEGLV------ 468
Query: 143 ARLPGDST-RQVVVRS 157
LPGDS+ QV +++
Sbjct: 469 IGLPGDSSPLQVAIKT 484
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,889,697
Number of Sequences: 37866
Number of extensions: 562279
Number of successful extensions: 1150
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1136
Number of HSP's gapped (non-prelim): 24
length of query: 293
length of database: 18,247,518
effective HSP length: 101
effective length of query: 192
effective length of database: 14,423,052
effective search space: 2769225984
effective search space used: 2769225984
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.