Search of human proteins with 116812622

Search of human proteins with 116812622

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|116812622 phosphatidylethanolamine-binding protein 4 [Homo
sapiens]
         (227 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|116812622 phosphatidylethanolamine-binding protein 4 [Homo sa...   476   e-135
gi|4505621 prostatic binding protein [Homo sapiens]                    80   1e-15
gi|169636418 mitochondrial ribosomal protein L38 [Homo sapiens]        35   0.053
gi|218749848 family with sequence similarity 38, member A [Homo ...    30   1.7  
gi|222446620 hypothetical protein LOC342346 [Homo sapiens]             28   8.4  
gi|4759226 transforming growth factor, beta receptor I isoform 1...    28   8.4  
gi|195963412 transforming growth factor, beta receptor I isoform...    28   8.4  
gi|110349786 Alstrom syndrome 1 [Homo sapiens]                         28   8.4  

>gi|116812622 phosphatidylethanolamine-binding protein 4 [Homo
           sapiens]
          Length = 227

 Score =  476 bits (1224), Expect = e-135
 Identities = 227/227 (100%), Positives = 227/227 (100%)

Query: 1   MGWTMRLVTAALLLGLMMVVTGDEDENSPCAHEALLDEDTLFCQGLEVFYPELGNIGCKV 60
           MGWTMRLVTAALLLGLMMVVTGDEDENSPCAHEALLDEDTLFCQGLEVFYPELGNIGCKV
Sbjct: 1   MGWTMRLVTAALLLGLMMVVTGDEDENSPCAHEALLDEDTLFCQGLEVFYPELGNIGCKV 60

Query: 61  VPDCNNYRQKITSWMEPIVKFPGAVDGATYILVMVDPDAPSRAEPRQRFWRHWLVTDIKG 120
           VPDCNNYRQKITSWMEPIVKFPGAVDGATYILVMVDPDAPSRAEPRQRFWRHWLVTDIKG
Sbjct: 61  VPDCNNYRQKITSWMEPIVKFPGAVDGATYILVMVDPDAPSRAEPRQRFWRHWLVTDIKG 120

Query: 121 ADLKKGKIQGQELSAYQAPSPPAHSGFHRYQFFVYLQEGKVISLLPKENKTRGSWKMDRF 180
           ADLKKGKIQGQELSAYQAPSPPAHSGFHRYQFFVYLQEGKVISLLPKENKTRGSWKMDRF
Sbjct: 121 ADLKKGKIQGQELSAYQAPSPPAHSGFHRYQFFVYLQEGKVISLLPKENKTRGSWKMDRF 180

Query: 181 LNRFHLGEPEASTQFMTQNYQDSPTLQAPRERASEPKHKNQAEIAAC 227
           LNRFHLGEPEASTQFMTQNYQDSPTLQAPRERASEPKHKNQAEIAAC
Sbjct: 181 LNRFHLGEPEASTQFMTQNYQDSPTLQAPRERASEPKHKNQAEIAAC 227


>gi|4505621 prostatic binding protein [Homo sapiens]
          Length = 187

 Score = 80.1 bits (196), Expect = 1e-15
 Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 8/124 (6%)

Query: 79  VKFPGAVDGATYILVMVDPDAPSRAEPRQRFWRHWLVTDIKGADLKKGKIQGQELSAYQA 138
           + + G   G  Y LV+ DPDAPSR +P+ R W H+LV ++KG D+  G +    LS Y  
Sbjct: 53  ISWDGLDSGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTV----LSDYVG 108

Query: 139 PSPPAHSGFHRYQFFVYLQEGKVIS----LLPKENKTRGSWKMDRFLNRFHLGEPEASTQ 194
             PP  +G HRY + VY Q+  +      L  +    RG +K+  F  ++ L  P A T 
Sbjct: 109 SGPPKGTGLHRYVWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTC 168

Query: 195 FMTQ 198
           +  +
Sbjct: 169 YQAE 172


>gi|169636418 mitochondrial ribosomal protein L38 [Homo sapiens]
          Length = 380

 Score = 35.0 bits (79), Expect = 0.053
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 84  AVDGATYILVMVDPDAPSRAEPRQRFWRHWLVTDIKGADLKKGKIQGQELSAYQAPSPPA 143
           A +G+ + L++   D     EP   +  HWL+T+I G  + +G++       Y  P P  
Sbjct: 208 AEEGSLWTLLLTSLDG-HLLEPDAEYL-HWLLTNIPGNRVAEGQVT----CPYLPPFPAR 261

Query: 144 HSGFHRYQFFVYLQE 158
            SG HR  F ++ Q+
Sbjct: 262 GSGIHRLAFLLFKQD 276


>gi|218749848 family with sequence similarity 38, member A [Homo
            sapiens]
          Length = 2090

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 6/64 (9%)

Query: 97   PDAPSRAEP-RQRFWRHWL--VTDIKGAD--LKKGKIQGQELSAYQAPSPPAHSGFH-RY 150
            PD+P  + P R+++WR WL   T I   D  L +   + +E +  + P P A S F   Y
Sbjct: 958  PDSPGGSSPPRRQWWRPWLDHATVIHSGDYFLFESDSEEEEEAVPEDPRPSAQSAFQLAY 1017

Query: 151  QFFV 154
            Q +V
Sbjct: 1018 QAWV 1021


>gi|222446620 hypothetical protein LOC342346 [Homo sapiens]
          Length = 1141

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 12/45 (26%)

Query: 117  DIKGAD--LKKGKIQGQ----------ELSAYQAPSPPAHSGFHR 149
            DI G D  L KG++  Q          EL+A +APSPP+ S + R
Sbjct: 1013 DILGVDGILYKGRVNSQRGAQPLAVAKELAAVKAPSPPSQSLYDR 1057


>gi|4759226 transforming growth factor, beta receptor I isoform 1
           precursor [Homo sapiens]
          Length = 503

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 125 KGKIQGQELSAYQAPSPPAHSGFHRYQFF--VYLQEGKVISLLPKENKTRGSWKMDRFLN 182
           +GK +G+E++     S    S F   + +  V L+   ++  +  +NK  G+W     ++
Sbjct: 221 RGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 280

Query: 183 RFH 185
            +H
Sbjct: 281 DYH 283


>gi|195963412 transforming growth factor, beta receptor I isoform 2
           precursor [Homo sapiens]
          Length = 426

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 125 KGKIQGQELSAYQAPSPPAHSGFHRYQFF--VYLQEGKVISLLPKENKTRGSWKMDRFLN 182
           +GK +G+E++     S    S F   + +  V L+   ++  +  +NK  G+W     ++
Sbjct: 144 RGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 203

Query: 183 RFH 185
            +H
Sbjct: 204 DYH 206


>gi|110349786 Alstrom syndrome 1 [Homo sapiens]
          Length = 4169

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 20/87 (22%), Positives = 35/87 (40%)

Query: 82  PGAVDGATYILVMVDPDAPSRAEPRQRFWRHWLVTDIKGADLKKGKIQGQELSAYQAPSP 141
           PG  D  T I  +       R +P   + +    + +    LK   + G        P+ 
Sbjct: 748 PGPADQKTEIPAVQSSSYSQREKPSILYPQDLADSHLPEEGLKVSAVAGPADQKTGLPTV 807

Query: 142 PAHSGFHRYQFFVYLQEGKVISLLPKE 168
           P+ +  HR +  V+ Q+  + S LP+E
Sbjct: 808 PSSAYSHREKLLVFYQQALLDSHLPEE 834


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.135    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,492,317
Number of Sequences: 37866
Number of extensions: 427900
Number of successful extensions: 919
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 916
Number of HSP's gapped (non-prelim): 8
length of query: 227
length of database: 18,247,518
effective HSP length: 99
effective length of query: 128
effective length of database: 14,498,784
effective search space: 1855844352
effective search space used: 1855844352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.