Search of human proteins with 239746778

Search of human proteins with 239746778

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239746778 PREDICTED: hypothetical protein XP_002343847 [Homo
sapiens]
         (215 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239746778 PREDICTED: hypothetical protein XP_002343847 [Homo ...   447   e-126
gi|145386578 torsin family 2, member A isoform a [Homo sapiens]        29   2.6  
gi|145386549 torsin family 2, member A isoform b [Homo sapiens]        29   2.6  
gi|197313700 torsin family 2, member A isoform c [Homo sapiens]        29   2.6  
gi|126157508 N-acetylated alpha-linked acidic dipeptidase 2 [Hom...    28   5.9  
gi|166064062 tumor suppressing subtransferable candidate 5 [Homo...    28   7.7  
gi|166064060 tumor suppressing subtransferable candidate 5 [Homo...    28   7.7  
gi|32455256 LAG1 longevity assurance 2 [Homo sapiens]                  28   7.7  
gi|31077094 LAG1 longevity assurance 2 [Homo sapiens]                  28   7.7  

>gi|239746778 PREDICTED: hypothetical protein XP_002343847 [Homo
           sapiens]
          Length = 215

 Score =  447 bits (1149), Expect = e-126
 Identities = 215/215 (100%), Positives = 215/215 (100%)

Query: 1   MRTIIVISGNWRTASEVDLETPVVAEEIWAFNHLLLLTPVYSRTRHLASIMNTLLTGKEK 60
           MRTIIVISGNWRTASEVDLETPVVAEEIWAFNHLLLLTPVYSRTRHLASIMNTLLTGKEK
Sbjct: 1   MRTIIVISGNWRTASEVDLETPVVAEEIWAFNHLLLLTPVYSRTRHLASIMNTLLTGKEK 60

Query: 61  ERTRSHSDQFATHSFYYLQNGKHPAGEISEVWRLGLNLVGALGDRGKAGHPHSQWFFHLA 120
           ERTRSHSDQFATHSFYYLQNGKHPAGEISEVWRLGLNLVGALGDRGKAGHPHSQWFFHLA
Sbjct: 61  ERTRSHSDQFATHSFYYLQNGKHPAGEISEVWRLGLNLVGALGDRGKAGHPHSQWFFHLA 120

Query: 121 LLTQWFFHLALLTQGVVLGPLAHWLLRRQLVLRELLAGLVAGAGCRWRALRLRCRHGRHL 180
           LLTQWFFHLALLTQGVVLGPLAHWLLRRQLVLRELLAGLVAGAGCRWRALRLRCRHGRHL
Sbjct: 121 LLTQWFFHLALLTQGVVLGPLAHWLLRRQLVLRELLAGLVAGAGCRWRALRLRCRHGRHL 180

Query: 181 CRSPFLPASPSTNCFSLLGHLGRSLTFFFGSLGLG 215
           CRSPFLPASPSTNCFSLLGHLGRSLTFFFGSLGLG
Sbjct: 181 CRSPFLPASPSTNCFSLLGHLGRSLTFFFGSLGLG 215


>gi|145386578 torsin family 2, member A isoform a [Homo sapiens]
          Length = 321

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 156 LAGLVAGAGCRWRALRLRCRHGRHLCRSPFLPASPSTNCFSLLGHL 201
           L GLV+ A   W    LRC  G   C   F P  P   C  L  HL
Sbjct: 17  LLGLVSAAAAAWDLASLRCTLGA-FCECDFRPDLPGLEC-DLAQHL 60


>gi|145386549 torsin family 2, member A isoform b [Homo sapiens]
          Length = 253

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 156 LAGLVAGAGCRWRALRLRCRHGRHLCRSPFLPASPSTNCFSLLGHL 201
           L GLV+ A   W    LRC  G   C   F P  P   C  L  HL
Sbjct: 17  LLGLVSAAAAAWDLASLRCTLGA-FCECDFRPDLPGLEC-DLAQHL 60


>gi|197313700 torsin family 2, member A isoform c [Homo sapiens]
          Length = 242

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 156 LAGLVAGAGCRWRALRLRCRHGRHLCRSPFLPASPSTNCFSLLGHL 201
           L GLV+ A   W    LRC  G   C   F P  P   C  L  HL
Sbjct: 17  LLGLVSAAAAAWDLASLRCTLGA-FCECDFRPDLPGLEC-DLAQHL 60


>gi|126157508 N-acetylated alpha-linked acidic dipeptidase 2 [Homo
          sapiens]
          Length = 795

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 16/45 (35%), Positives = 21/45 (46%)

Query: 48 ASIMNTLLTGKEKERTRSHSDQFATHSFYYLQNGKHPAGEISEVW 92
          AS+ NT L GK+    + H+DQ A     YL N    A  +   W
Sbjct: 6  ASLPNTSLQGKKMAYQKVHADQRAPGHSQYLDNDDLQATALDLEW 50


>gi|166064062 tumor suppressing subtransferable candidate 5 [Homo
           sapiens]
          Length = 424

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 14/46 (30%), Positives = 23/46 (50%)

Query: 122 LTQWFFHLALLTQGVVLGPLAHWLLRRQLVLRELLAGLVAGAGCRW 167
           L  +F  L ++TQG+V+G L+       L+   +L  +V G    W
Sbjct: 279 LMSFFGLLQMVTQGLVIGQLSSHFSEEVLLRASVLVFIVVGLAMAW 324


>gi|166064060 tumor suppressing subtransferable candidate 5 [Homo
           sapiens]
          Length = 424

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 14/46 (30%), Positives = 23/46 (50%)

Query: 122 LTQWFFHLALLTQGVVLGPLAHWLLRRQLVLRELLAGLVAGAGCRW 167
           L  +F  L ++TQG+V+G L+       L+   +L  +V G    W
Sbjct: 279 LMSFFGLLQMVTQGLVIGQLSSHFSEEVLLRASVLVFIVVGLAMAW 324


>gi|32455256 LAG1 longevity assurance 2 [Homo sapiens]
          Length = 380

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 34 LLLLTPVYSRTRHLASIMNTLLTGKEKERTRSHSDQFATHSFYYLQNGKHP 84
          LL L   Y    ++A+ +  LL  KEK R R+  +  AT   +YL +GK P
Sbjct: 47 LLFLIVRYFFELYVATPLAALLNIKEKTRLRAPPN--ATLEHFYLTSGKQP 95


>gi|31077094 LAG1 longevity assurance 2 [Homo sapiens]
          Length = 380

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 34 LLLLTPVYSRTRHLASIMNTLLTGKEKERTRSHSDQFATHSFYYLQNGKHP 84
          LL L   Y    ++A+ +  LL  KEK R R+  +  AT   +YL +GK P
Sbjct: 47 LLFLIVRYFFELYVATPLAALLNIKEKTRLRAPPN--ATLEHFYLTSGKQP 95


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.327    0.140    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,722,162
Number of Sequences: 37866
Number of extensions: 386411
Number of successful extensions: 1060
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1054
Number of HSP's gapped (non-prelim): 9
length of query: 215
length of database: 18,247,518
effective HSP length: 98
effective length of query: 117
effective length of database: 14,536,650
effective search space: 1700788050
effective search space used: 1700788050
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.