Search of human proteins with 239746562

Search of human proteins with 239746562

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239746562 PREDICTED: hypothetical protein XP_002343779 [Homo
sapiens]
         (71 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239746562 PREDICTED: hypothetical protein XP_002343779 [Homo ...   152   5e-38
gi|169217160 PREDICTED: similar to hCG1792883 [Homo sapiens]           52   8e-08
gi|169216352 PREDICTED: similar to hCG1792883 [Homo sapiens]           52   8e-08
gi|169216625 PREDICTED: similar to hCG1792883 [Homo sapiens]           52   8e-08
gi|55741647 hypothetical protein LOC158405 [Homo sapiens]              32   0.14 
gi|197313781 transmembrane protein 130 isoform c [Homo sapiens]        26   7.7  
gi|197313779 transmembrane protein 130 isoform a [Homo sapiens]        26   7.7  
gi|23097274 transmembrane protein 130 isoform b [Homo sapiens]         26   7.7  

>gi|239746562 PREDICTED: hypothetical protein XP_002343779 [Homo
          sapiens]
          Length = 71

 Score =  152 bits (384), Expect = 5e-38
 Identities = 71/71 (100%), Positives = 71/71 (100%)

Query: 1  MACEVTTLTHKPWNNSVKAGTLITKSFLSSAQSTKIFCCLWDLVCKQLKGDAAQGLAVDG 60
          MACEVTTLTHKPWNNSVKAGTLITKSFLSSAQSTKIFCCLWDLVCKQLKGDAAQGLAVDG
Sbjct: 1  MACEVTTLTHKPWNNSVKAGTLITKSFLSSAQSTKIFCCLWDLVCKQLKGDAAQGLAVDG 60

Query: 61 NVEEHGGVDHG 71
          NVEEHGGVDHG
Sbjct: 61 NVEEHGGVDHG 71


>gi|169217160 PREDICTED: similar to hCG1792883 [Homo sapiens]
          Length = 124

 Score = 52.4 bits (124), Expect = 8e-08
 Identities = 25/35 (71%), Positives = 29/35 (82%), Gaps = 1/35 (2%)

Query: 31 AQSTKIFCCLWDLVCKQLKGDAAQGLAVDGNVEEH 65
          AQS KIFCCLW+ V KQL+ DAAQGL + G+VEEH
Sbjct: 57 AQSMKIFCCLWNFVYKQLE-DAAQGLTMGGDVEEH 90


>gi|169216352 PREDICTED: similar to hCG1792883 [Homo sapiens]
          Length = 124

 Score = 52.4 bits (124), Expect = 8e-08
 Identities = 25/35 (71%), Positives = 29/35 (82%), Gaps = 1/35 (2%)

Query: 31 AQSTKIFCCLWDLVCKQLKGDAAQGLAVDGNVEEH 65
          AQS KIFCCLW+ V KQL+ DAAQGL + G+VEEH
Sbjct: 57 AQSMKIFCCLWNFVYKQLE-DAAQGLTMGGDVEEH 90


>gi|169216625 PREDICTED: similar to hCG1792883 [Homo sapiens]
          Length = 124

 Score = 52.4 bits (124), Expect = 8e-08
 Identities = 25/35 (71%), Positives = 29/35 (82%), Gaps = 1/35 (2%)

Query: 31 AQSTKIFCCLWDLVCKQLKGDAAQGLAVDGNVEEH 65
          AQS KIFCCLW+ V KQL+ DAAQGL + G+VEEH
Sbjct: 57 AQSMKIFCCLWNFVYKQLE-DAAQGLTMGGDVEEH 90


>gi|55741647 hypothetical protein LOC158405 [Homo sapiens]
          Length = 716

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 17/61 (27%), Positives = 32/61 (52%)

Query: 9   THKPWNNSVKAGTLITKSFLSSAQSTKIFCCLWDLVCKQLKGDAAQGLAVDGNVEEHGGV 68
           T +P + + K   ++  S  SS+Q+  +  C  D++ K++K +  +   +  N E  GGV
Sbjct: 164 TQRPQSIARKRPGVVPSSLHSSSQTQMVDECSNDVIIKKIKQEIPEDYYIVANAELTGGV 223

Query: 69  D 69
           D
Sbjct: 224 D 224


>gi|197313781 transmembrane protein 130 isoform c [Homo sapiens]
          Length = 321

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 10/62 (16%)

Query: 5  VTTLTHKPWNNSVKAGTLITKSFL----SSAQSTKIFCCLWDLVCKQLKGDAAQGLAVDG 60
          VT  T  PW +S    T++  SFL    S+   T +F   WD       GD  Q +  D 
Sbjct: 37 VTQNTSLPWPSSYLTKTVLKVSFLLHDPSNFLKTALFLYSWDF------GDGTQMVTEDS 90

Query: 61 NV 62
           V
Sbjct: 91 VV 92


>gi|197313779 transmembrane protein 130 isoform a [Homo sapiens]
          Length = 435

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 10/62 (16%)

Query: 5   VTTLTHKPWNNSVKAGTLITKSFL----SSAQSTKIFCCLWDLVCKQLKGDAAQGLAVDG 60
           VT  T  PW +S    T++  SFL    S+   T +F   WD       GD  Q +  D 
Sbjct: 139 VTQNTSLPWPSSYLTKTVLKVSFLLHDPSNFLKTALFLYSWDF------GDGTQMVTEDS 192

Query: 61  NV 62
            V
Sbjct: 193 VV 194


>gi|23097274 transmembrane protein 130 isoform b [Homo sapiens]
          Length = 423

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 10/62 (16%)

Query: 5   VTTLTHKPWNNSVKAGTLITKSFL----SSAQSTKIFCCLWDLVCKQLKGDAAQGLAVDG 60
           VT  T  PW +S    T++  SFL    S+   T +F   WD       GD  Q +  D 
Sbjct: 139 VTQNTSLPWPSSYLTKTVLKVSFLLHDPSNFLKTALFLYSWDF------GDGTQMVTEDS 192

Query: 61  NV 62
            V
Sbjct: 193 VV 194


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.131    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,548,822
Number of Sequences: 37866
Number of extensions: 76102
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 150
Number of HSP's gapped (non-prelim): 8
length of query: 71
length of database: 18,247,518
effective HSP length: 44
effective length of query: 27
effective length of database: 16,581,414
effective search space: 447698178
effective search space used: 447698178
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.