Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239745465
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745465 PREDICTED: hypothetical protein XP_002343498 [Homo
sapiens]
(58 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239745465 PREDICTED: hypothetical protein XP_002343498 [Homo ... 123 3e-29
gi|239756617 PREDICTED: hypothetical protein [Homo sapiens] 107 2e-24
gi|239751105 PREDICTED: hypothetical protein XP_002347705 [Homo ... 107 2e-24
gi|239745592 PREDICTED: hypothetical protein XP_002344154 [Homo ... 107 2e-24
gi|239756489 PREDICTED: hypothetical protein [Homo sapiens] 105 1e-23
gi|46399200 testis-specific bromodomain protein [Homo sapiens] 27 4.6
gi|46399198 testis-specific bromodomain protein [Homo sapiens] 27 4.6
gi|21361101 MAP kinase-interacting serine/threonine kinase 1 iso... 26 7.9
gi|125988395 jumonji domain containing 6 isoform 1 [Homo sapiens] 26 7.9
gi|125988389 jumonji domain containing 6 isoform 2 [Homo sapiens] 26 7.9
>gi|239745465 PREDICTED: hypothetical protein XP_002343498 [Homo
sapiens]
Length = 58
Score = 123 bits (309), Expect = 3e-29
Identities = 58/58 (100%), Positives = 58/58 (100%)
Query: 1 MCVSGVNLEAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTLP 58
MCVSGVNLEAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTLP
Sbjct: 1 MCVSGVNLEAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTLP 58
>gi|239756617 PREDICTED: hypothetical protein [Homo sapiens]
Length = 63
Score = 107 bits (267), Expect = 2e-24
Identities = 50/50 (100%), Positives = 50/50 (100%)
Query: 9 EAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTLP 58
EAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTLP
Sbjct: 14 EAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTLP 63
>gi|239751105 PREDICTED: hypothetical protein XP_002347705 [Homo
sapiens]
Length = 138
Score = 107 bits (267), Expect = 2e-24
Identities = 50/50 (100%), Positives = 50/50 (100%)
Query: 9 EAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTLP 58
EAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTLP
Sbjct: 89 EAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTLP 138
>gi|239745592 PREDICTED: hypothetical protein XP_002344154 [Homo
sapiens]
Length = 138
Score = 107 bits (267), Expect = 2e-24
Identities = 50/50 (100%), Positives = 50/50 (100%)
Query: 9 EAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTLP 58
EAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTLP
Sbjct: 89 EAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTLP 138
>gi|239756489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 77
Score = 105 bits (261), Expect = 1e-23
Identities = 49/50 (98%), Positives = 49/50 (98%)
Query: 9 EAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTLP 58
EAEDCSSSD SCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTLP
Sbjct: 28 EAEDCSSSDFSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTLP 77
>gi|46399200 testis-specific bromodomain protein [Homo sapiens]
Length = 947
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 3 VSGVNLEAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINP 50
V V+ +E SSS SS S S+ + + S E+ P++ + P
Sbjct: 631 VENVSRLSESSSSSSSSSESESSSSDLSSSDSSDSESEMFPKFTEVKP 678
>gi|46399198 testis-specific bromodomain protein [Homo sapiens]
Length = 947
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 3 VSGVNLEAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINP 50
V V+ +E SSS SS S S+ + + S E+ P++ + P
Sbjct: 631 VENVSRLSESSSSSSSSSESESSSSDLSSSDSSDSESEMFPKFTEVKP 678
>gi|21361101 MAP kinase-interacting serine/threonine kinase 1
isoform 1 [Homo sapiens]
Length = 465
Score = 25.8 bits (55), Expect = 7.9
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 1 MCVSGVNLEAEDCSSSDSSCVRPDSQSEADAGTETISHREILPE 44
M SG+ SSD P + + AGT I+HR++ PE
Sbjct: 177 MAPSGLTAAPTSLGSSD-----PPTSASQVAGTTGIAHRDLKPE 215
>gi|125988395 jumonji domain containing 6 isoform 1 [Homo sapiens]
Length = 414
Score = 25.8 bits (55), Expect = 7.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 4 SGVNLEAEDCSSSDSSCVRPDSQSEADAGTE 34
+G+ ++ SSS SS DS SE ++G+E
Sbjct: 336 TGIASDSSSDSSSSSSSSSSDSDSECESGSE 366
>gi|125988389 jumonji domain containing 6 isoform 2 [Homo sapiens]
Length = 403
Score = 25.8 bits (55), Expect = 7.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 4 SGVNLEAEDCSSSDSSCVRPDSQSEADAGTE 34
+G+ ++ SSS SS DS SE ++G+E
Sbjct: 336 TGIASDSSSDSSSSSSSSSSDSDSECESGSE 366
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.127 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,404,414
Number of Sequences: 37866
Number of extensions: 76137
Number of successful extensions: 196
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 185
Number of HSP's gapped (non-prelim): 12
length of query: 58
length of database: 18,247,518
effective HSP length: 31
effective length of query: 27
effective length of database: 17,073,672
effective search space: 460989144
effective search space used: 460989144
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.