Search of human proteins with 239745200

Search of human proteins with 239745200

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239745200 PREDICTED: hypothetical protein XP_002343405
isoform 2 [Homo sapiens]
         (64 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756328 PREDICTED: hypothetical protein isoform 1 [Homo sap...   130   2e-31
gi|239750838 PREDICTED: hypothetical protein XP_002347576 isofor...   130   2e-31
gi|239745200 PREDICTED: hypothetical protein XP_002343405 isofor...   130   2e-31
gi|188497648 ubiquitin specific peptidase 37 [Homo sapiens]            28   2.1  
gi|241666479 hypothetical protein LOC79363 [Homo sapiens]              26   7.8  
gi|239753832 PREDICTED: hypothetical protein XP_002345793 [Homo ...    26   7.8  
gi|239748395 PREDICTED: hypothetical protein XP_002346654 [Homo ...    26   7.8  
gi|239742323 PREDICTED: hypothetical protein XP_002342491 [Homo ...    26   7.8  

>gi|239756328 PREDICTED: hypothetical protein isoform 1 [Homo
          sapiens]
          Length = 64

 Score =  130 bits (328), Expect = 2e-31
 Identities = 64/64 (100%), Positives = 64/64 (100%)

Query: 1  MVILSYSLRKSLSWRFNISRSSTKLRCAKSSGAWGSKPRGSEHILRGLRLARRRALGFLG 60
          MVILSYSLRKSLSWRFNISRSSTKLRCAKSSGAWGSKPRGSEHILRGLRLARRRALGFLG
Sbjct: 1  MVILSYSLRKSLSWRFNISRSSTKLRCAKSSGAWGSKPRGSEHILRGLRLARRRALGFLG 60

Query: 61 RPRY 64
          RPRY
Sbjct: 61 RPRY 64


>gi|239750838 PREDICTED: hypothetical protein XP_002347576 isoform
          3 [Homo sapiens]
          Length = 64

 Score =  130 bits (328), Expect = 2e-31
 Identities = 64/64 (100%), Positives = 64/64 (100%)

Query: 1  MVILSYSLRKSLSWRFNISRSSTKLRCAKSSGAWGSKPRGSEHILRGLRLARRRALGFLG 60
          MVILSYSLRKSLSWRFNISRSSTKLRCAKSSGAWGSKPRGSEHILRGLRLARRRALGFLG
Sbjct: 1  MVILSYSLRKSLSWRFNISRSSTKLRCAKSSGAWGSKPRGSEHILRGLRLARRRALGFLG 60

Query: 61 RPRY 64
          RPRY
Sbjct: 61 RPRY 64


>gi|239745200 PREDICTED: hypothetical protein XP_002343405 isoform
          2 [Homo sapiens]
          Length = 64

 Score =  130 bits (328), Expect = 2e-31
 Identities = 64/64 (100%), Positives = 64/64 (100%)

Query: 1  MVILSYSLRKSLSWRFNISRSSTKLRCAKSSGAWGSKPRGSEHILRGLRLARRRALGFLG 60
          MVILSYSLRKSLSWRFNISRSSTKLRCAKSSGAWGSKPRGSEHILRGLRLARRRALGFLG
Sbjct: 1  MVILSYSLRKSLSWRFNISRSSTKLRCAKSSGAWGSKPRGSEHILRGLRLARRRALGFLG 60

Query: 61 RPRY 64
          RPRY
Sbjct: 61 RPRY 64


>gi|188497648 ubiquitin specific peptidase 37 [Homo sapiens]
          Length = 979

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 10/69 (14%)

Query: 4   LSYSLRKSLSWRFNISRSSTKLRCAKSSGAWGSKPRGSEHILRGLRLAR----------R 53
           L+ S  K LS + +    ++ L   +SS  +GS+    EH   G  L R          +
Sbjct: 240 LTSSREKQLSLKQSEENRTSGLLPLQSSSFYGSRAGSKEHSSGGTNLDRTNVSSQTPSAK 299

Query: 54  RALGFLGRP 62
           R+LGFL +P
Sbjct: 300 RSLGFLPQP 308


>gi|241666479 hypothetical protein LOC79363 [Homo sapiens]
          Length = 258

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)

Query: 34 WGSKPRGSEHILRGLRLARRRALGFLGRP 62
          W     G E++   LR  RRR  G L RP
Sbjct: 15 WHESAEGKEYLACILRKNRRRVFGLLERP 43


>gi|239753832 PREDICTED: hypothetical protein XP_002345793 [Homo
           sapiens]
          Length = 203

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 2/27 (7%)

Query: 7   SLRKSLSWRFNISRSSTKL--RCAKSS 31
           SL KS+SW+++ SRSS     +C+ S+
Sbjct: 171 SLTKSVSWKYSASRSSRSFSGKCSGSA 197


>gi|239748395 PREDICTED: hypothetical protein XP_002346654 [Homo
           sapiens]
          Length = 203

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 2/27 (7%)

Query: 7   SLRKSLSWRFNISRSSTKL--RCAKSS 31
           SL KS+SW+++ SRSS     +C+ S+
Sbjct: 171 SLTKSVSWKYSASRSSRSFSGKCSGSA 197


>gi|239742323 PREDICTED: hypothetical protein XP_002342491 [Homo
           sapiens]
          Length = 203

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 2/27 (7%)

Query: 7   SLRKSLSWRFNISRSSTKL--RCAKSS 31
           SL KS+SW+++ SRSS     +C+ S+
Sbjct: 171 SLTKSVSWKYSASRSSRSFSGKCSGSA 197


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.136    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,184,587
Number of Sequences: 37866
Number of extensions: 67237
Number of successful extensions: 222
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 218
Number of HSP's gapped (non-prelim): 8
length of query: 64
length of database: 18,247,518
effective HSP length: 37
effective length of query: 27
effective length of database: 16,846,476
effective search space: 454854852
effective search space used: 454854852
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.