Search of human proteins with 116642895

Search of human proteins with 116642895

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|116642895 hypothetical protein LOC390637 [Homo sapiens]
         (385 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|116642895 hypothetical protein LOC390637 [Homo sapiens]            782   0.0  
gi|196049380 3-hydroxy-3-methylglutaryl-Coenzyme A reductase iso...    30   4.8  
gi|4557643 3-hydroxy-3-methylglutaryl-Coenzyme A reductase isofo...    30   4.8  
gi|56549696 E1A binding protein p400 [Homo sapiens]                    30   4.8  
gi|5174465 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3...    29   6.3  
gi|68448528 mesothelin-like [Homo sapiens]                             29   6.3  

>gi|116642895 hypothetical protein LOC390637 [Homo sapiens]
          Length = 385

 Score =  782 bits (2020), Expect = 0.0
 Identities = 385/385 (100%), Positives = 385/385 (100%)

Query: 1   MALPHDSNETSYLLPPNNEDWGRQTIPDFVYGQKDLMAEGIQWPRNAPGIPDALPQSPFD 60
           MALPHDSNETSYLLPPNNEDWGRQTIPDFVYGQKDLMAEGIQWPRNAPGIPDALPQSPFD
Sbjct: 1   MALPHDSNETSYLLPPNNEDWGRQTIPDFVYGQKDLMAEGIQWPRNAPGIPDALPQSPFD 60

Query: 61  AALCSAWKQRVELGLFRYRLRELQTQILPGAVGFVAQLNVERGVQRRPPQTIKSVRQAFD 120
           AALCSAWKQRVELGLFRYRLRELQTQILPGAVGFVAQLNVERGVQRRPPQTIKSVRQAFD
Sbjct: 61  AALCSAWKQRVELGLFRYRLRELQTQILPGAVGFVAQLNVERGVQRRPPQTIKSVRQAFD 120

Query: 121 PVQFNFNKIRPGEVLFRLHREPDLPGTLLQEDILVVINVSPLEWGHVLLVPEPARQLPQR 180
           PVQFNFNKIRPGEVLFRLHREPDLPGTLLQEDILVVINVSPLEWGHVLLVPEPARQLPQR
Sbjct: 121 PVQFNFNKIRPGEVLFRLHREPDLPGTLLQEDILVVINVSPLEWGHVLLVPEPARQLPQR 180

Query: 181 LLPGALRAGIEAVLLSLHPGFRVGFNSLGGLASVNHLHLHGYYLAHRLPVEQAPSEPLDP 240
           LLPGALRAGIEAVLLSLHPGFRVGFNSLGGLASVNHLHLHGYYLAHRLPVEQAPSEPLDP
Sbjct: 181 LLPGALRAGIEAVLLSLHPGFRVGFNSLGGLASVNHLHLHGYYLAHRLPVEQAPSEPLDP 240

Query: 241 GGHLHLLQDLPAPGFLFYTRGPGPDLESLISRVCRATDYLTDHEIAHNLFVTRGAPPGKT 300
           GGHLHLLQDLPAPGFLFYTRGPGPDLESLISRVCRATDYLTDHEIAHNLFVTRGAPPGKT
Sbjct: 241 GGHLHLLQDLPAPGFLFYTRGPGPDLESLISRVCRATDYLTDHEIAHNLFVTRGAPPGKT 300

Query: 301 SPSSALTGVRVILWARKSSFGIKDGEAFNVALCELAGHLPVKTSQDFSSLTEAAAVALIQ 360
           SPSSALTGVRVILWARKSSFGIKDGEAFNVALCELAGHLPVKTSQDFSSLTEAAAVALIQ
Sbjct: 301 SPSSALTGVRVILWARKSSFGIKDGEAFNVALCELAGHLPVKTSQDFSSLTEAAAVALIQ 360

Query: 361 DCRLPPSQAEDVQAALVALMSQEEQ 385
           DCRLPPSQAEDVQAALVALMSQEEQ
Sbjct: 361 DCRLPPSQAEDVQAALVALMSQEEQ 385


>gi|196049380 3-hydroxy-3-methylglutaryl-Coenzyme A reductase
           isoform 2 [Homo sapiens]
          Length = 835

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 95  VAQLNVERGVQRRPPQTIKSVRQAFDPVQ--FNFNKIRPGEVLFRLHREPDLPGTLLQED 152
           V Q  V     RR P  +++  Q  D V+     N+ R  EV+  L  E D P       
Sbjct: 359 VTQKKVPDNCCRREPMLVRN-NQKCDSVEEETGINRERKVEVIKPLVAETDTPNRAT--- 414

Query: 153 ILVVINVSPLEWGHVLLVPEPARQLPQRLLP 183
             VV N S L+   VL+  EP  +LP+   P
Sbjct: 415 -FVVGNSSLLDTSSVLVTQEPEIELPREPRP 444


>gi|4557643 3-hydroxy-3-methylglutaryl-Coenzyme A reductase isoform
           1 [Homo sapiens]
          Length = 888

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 95  VAQLNVERGVQRRPPQTIKSVRQAFDPVQ--FNFNKIRPGEVLFRLHREPDLPGTLLQED 152
           V Q  V     RR P  +++  Q  D V+     N+ R  EV+  L  E D P       
Sbjct: 359 VTQKKVPDNCCRREPMLVRN-NQKCDSVEEETGINRERKVEVIKPLVAETDTPNRAT--- 414

Query: 153 ILVVINVSPLEWGHVLLVPEPARQLPQRLLP 183
             VV N S L+   VL+  EP  +LP+   P
Sbjct: 415 -FVVGNSSLLDTSSVLVTQEPEIELPREPRP 444


>gi|56549696 E1A binding protein p400 [Homo sapiens]
          Length = 3122

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 46   NAPGIPDALPQSPFDAALCSAWKQRVELGLFRYRLRELQTQILPGAVGFVAQLNVERGVQ 105
            + PG P   PQ+P  AA  SA  QR+ L        + Q ++  G V  +AQL    G Q
Sbjct: 1526 STPGQPPPQPQAPSHAAGQSALPQRLVLP------SQAQARLPSGEVVKIAQLASITGPQ 1579

Query: 106  RRPPQTIKSVRQAFDPVQFNFN 127
             R  Q    V   F   +F  +
Sbjct: 1580 SRVAQPETPVTLQFQGSKFTLS 1601


>gi|5174465 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3A1
           [Homo sapiens]
          Length = 406

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 168 LLVPEPARQLPQRLLPGALRAGIEAVL--LSLHPGFR 202
           LL+ E ++QLPQ ++ G  + G  A+L  L +HP  R
Sbjct: 143 LLLDEGSKQLPQAIIIGVKKGGTRALLEFLRVHPDVR 179


>gi|68448528 mesothelin-like [Homo sapiens]
          Length = 1053

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 14/94 (14%)

Query: 156 VINVSPLEWGHVLLVPEPARQLPQRLLPGALRAGIEAVLLSLH---PGFRVGFNSLGGL- 211
           ++ V+   W      P PA  L   L+PGAL++    +LLSL     G +    S GGL 
Sbjct: 252 MVGVTGPPWDPDAPAPAPAGTLTAHLIPGALQSSGLTLLLSLAAHCSGPQAKVLSPGGLD 311

Query: 212 -------ASVNHLHLHGYYLAHRLPVEQAPSEPL 238
                  AS N   L G++     P  Q P + L
Sbjct: 312 ASGANLWASANCSLLQGFWCQ---PASQLPRDQL 342


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,516,239
Number of Sequences: 37866
Number of extensions: 900104
Number of successful extensions: 1774
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1772
Number of HSP's gapped (non-prelim): 7
length of query: 385
length of database: 18,247,518
effective HSP length: 104
effective length of query: 281
effective length of database: 14,309,454
effective search space: 4020956574
effective search space used: 4020956574
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.