Search of human proteins with 116517313

Search of human proteins with 116517313

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|116517313 mannose-P-dolichol utilization defect 1 [Homo
sapiens]
         (247 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|116517313 mannose-P-dolichol utilization defect 1 [Homo sapiens]   486   e-137
gi|22748837 PQ loop repeat containing 3 [Homo sapiens]                 56   3e-08
gi|52353342 olfactory receptor, family 6, subfamily K, member 6 ...    33   0.23 
gi|239755210 PREDICTED: hypothetical protein [Homo sapiens]            32   0.67 
gi|239749699 PREDICTED: hypothetical protein XP_002347122 [Homo ...    32   0.67 
gi|239743965 PREDICTED: hypothetical protein XP_002344250 [Homo ...    32   0.67 
gi|10092687 NIPA-like domain containing 3 [Homo sapiens]               30   1.5  
gi|7705409 HemK methyltransferase family member 1 [Homo sapiens]       29   3.3  

>gi|116517313 mannose-P-dolichol utilization defect 1 [Homo sapiens]
          Length = 247

 Score =  486 bits (1250), Expect = e-137
 Identities = 247/247 (100%), Positives = 247/247 (100%)

Query: 1   MAAEADGPLKRLLVPILLPEKCYDQLFVQWDLLHVPCLKILLSKGLGLGIVAGSLLVKLP 60
           MAAEADGPLKRLLVPILLPEKCYDQLFVQWDLLHVPCLKILLSKGLGLGIVAGSLLVKLP
Sbjct: 1   MAAEADGPLKRLLVPILLPEKCYDQLFVQWDLLHVPCLKILLSKGLGLGIVAGSLLVKLP 60

Query: 61  QVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTITICFLV 120
           QVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTITICFLV
Sbjct: 61  QVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTITICFLV 120

Query: 121 MHYRGQTVKGVAFLACYGLVLLVLLSPLTPLTVVTLLQASNVPAVVVGRLLQAATNYHNG 180
           MHYRGQTVKGVAFLACYGLVLLVLLSPLTPLTVVTLLQASNVPAVVVGRLLQAATNYHNG
Sbjct: 121 MHYRGQTVKGVAFLACYGLVLLVLLSPLTPLTVVTLLQASNVPAVVVGRLLQAATNYHNG 180

Query: 181 HTGQLSAITVFLLFGGSLARIFTSIQETGDPLMAGTFVVSSLCNGLIAAQLLFYWNAKPP 240
           HTGQLSAITVFLLFGGSLARIFTSIQETGDPLMAGTFVVSSLCNGLIAAQLLFYWNAKPP
Sbjct: 181 HTGQLSAITVFLLFGGSLARIFTSIQETGDPLMAGTFVVSSLCNGLIAAQLLFYWNAKPP 240

Query: 241 HKQKKAQ 247
           HKQKKAQ
Sbjct: 241 HKQKKAQ 247


>gi|22748837 PQ loop repeat containing 3 [Homo sapiens]
          Length = 202

 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 16/192 (8%)

Query: 48  LGIVAGSLLVKLPQVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEAL 107
           LG+ A    +KLPQ+  +L A+SA GLSL S++LEL      + Y     +P  ++ E  
Sbjct: 14  LGVCAA---LKLPQISAVLAARSARGLSLPSLLLELAGFLVFLRYQCYYGYPPLTYLEYP 70

Query: 108 FLMLQTITICFLVMHYRGQTVKGVAFLAC-----YGLVLLVLLSPLTPLTVVTLLQASNV 162
            L+ Q + +   + H+ G   +   ++A      + L L   +  L  + + T + A++ 
Sbjct: 71  ILIAQDVILLLCIFHFNGNVKQATPYIAVLVSSWFILALQKWIIDLA-MNLCTFISAAS- 128

Query: 163 PAVVVGRLLQAATNYHNGHTGQLSAITVFLLFGGSLARIFTSIQETGDPLMAGTFVVSSL 222
                 +  Q    +    +G +SA+T  L       RI T++  T D  +   FV+   
Sbjct: 129 ------KFAQLQCLWKTRDSGTVSALTWSLSSYTCATRIITTLMTTNDFTILLRFVIMLA 182

Query: 223 CNGLIAAQLLFY 234
            N  +   +L Y
Sbjct: 183 LNIWVTVTVLRY 194


>gi|52353342 olfactory receptor, family 6, subfamily K, member 6
           [Homo sapiens]
          Length = 343

 Score = 33.1 bits (74), Expect = 0.23
 Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 7/96 (7%)

Query: 131 VAFLACYGLVLLVLLSPLTPLTVVT---LLQASNVPAVVVGRLLQAATNYHNGHTGQLSA 187
           V  LAC    L+V++  +    +V    ++  S +  ++V   + +A  +H   +   + 
Sbjct: 212 VLSLACTDTFLVVIVDAIHAAEIVASFLVIALSYIRIIIVILGMHSAEGHHKAFSTCAAH 271

Query: 188 ITVFLLFGGSLARIFTSIQET----GDPLMAGTFVV 219
           + VFLLF GS+A ++     T     D  +A TFV+
Sbjct: 272 LAVFLLFFGSVAVMYLRFSATYSVFWDTAIAVTFVI 307


>gi|239755210 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 241

 Score = 31.6 bits (70), Expect = 0.67
 Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 16/70 (22%)

Query: 33  LHVPCLKILLSKGLGL---GIVAGSLLVKLPQVF-------------KILGAKSAEGLSL 76
           LH+PCL+  L  GL L   G+  G LL++LPQ               ++L    A  L L
Sbjct: 76  LHLPCLRPHLDGGLQLLHPGLEQGLLLLQLPQQLLAGPLLHGVPELQRVLALHLAVVLGL 135

Query: 77  QSVMLELVAL 86
              +LELV L
Sbjct: 136 HEAVLELVNL 145


>gi|239749699 PREDICTED: hypothetical protein XP_002347122 [Homo
           sapiens]
          Length = 241

 Score = 31.6 bits (70), Expect = 0.67
 Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 16/70 (22%)

Query: 33  LHVPCLKILLSKGLGL---GIVAGSLLVKLPQVF-------------KILGAKSAEGLSL 76
           LH+PCL+  L  GL L   G+  G LL++LPQ               ++L    A  L L
Sbjct: 76  LHLPCLRPHLDGGLQLLHPGLEQGLLLLQLPQQLLAGPLLHGVPELQRVLALHLAVVLGL 135

Query: 77  QSVMLELVAL 86
              +LELV L
Sbjct: 136 HEAVLELVNL 145


>gi|239743965 PREDICTED: hypothetical protein XP_002344250 [Homo
           sapiens]
          Length = 241

 Score = 31.6 bits (70), Expect = 0.67
 Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 16/70 (22%)

Query: 33  LHVPCLKILLSKGLGL---GIVAGSLLVKLPQVF-------------KILGAKSAEGLSL 76
           LH+PCL+  L  GL L   G+  G LL++LPQ               ++L    A  L L
Sbjct: 76  LHLPCLRPHLDGGLQLLHPGLEQGLLLLQLPQQLLAGPLLHGVPELQRVLALHLAVVLGL 135

Query: 77  QSVMLELVAL 86
              +LELV L
Sbjct: 136 HEAVLELVNL 145


>gi|10092687 NIPA-like domain containing 3 [Homo sapiens]
          Length = 406

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 7/55 (12%)

Query: 102 SWGEALFLMLQTITICFLVMHYRGQTVKGVAFLACYGLVLLVLLSPLTPLTVVTL 156
           SW   L+++++ I  C L+  Y+ +    +       +V+L+L++ L  +TVVT+
Sbjct: 173 SWPFLLYMLVEIILFCLLLYFYKEKNANNI-------VVILLLVALLGSMTVVTV 220


>gi|7705409 HemK methyltransferase family member 1 [Homo sapiens]
          Length = 338

 Score = 29.3 bits (64), Expect = 3.3
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 10/75 (13%)

Query: 11  RLLVPILLPEKCYDQLFVQWDLLHV---------PCLKILLSKGLGLGIVAGSLLVKLPQ 61
           R++ P+ +P    ++L V+W L  V         P   ++L  G G G ++ SLL +LPQ
Sbjct: 125 RMVPPVFIPRPETEEL-VEWVLEEVAQRSHAVGSPGSPLILEVGCGSGAISLSLLSQLPQ 183

Query: 62  VFKILGAKSAEGLSL 76
              I   K    +SL
Sbjct: 184 SRVIAVDKREAAISL 198


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.140    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,496,997
Number of Sequences: 37866
Number of extensions: 320264
Number of successful extensions: 908
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 899
Number of HSP's gapped (non-prelim): 8
length of query: 247
length of database: 18,247,518
effective HSP length: 100
effective length of query: 147
effective length of database: 14,460,918
effective search space: 2125754946
effective search space used: 2125754946
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.