Search of human proteins with 239743748

Search of human proteins with 239743748

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239743748 PREDICTED: similar to BMS1-like, ribosome assembly
protein (yeast) [Homo sapiens]
         (166 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239743748 PREDICTED: similar to BMS1-like, ribosome assembly ...   355   8e-99
gi|239758065 PREDICTED: similar to BMS1-like, ribosome assembly ...   267   4e-72
gi|239743846 PREDICTED: similar to BMS1-like, ribosome assembly ...   234   3e-62
gi|224589071 BMS1-like, ribosome assembly protein [Homo sapiens]      219   1e-57
gi|39780588 TSR1, 20S rRNA accumulation [Homo sapiens]                 37   0.006
gi|58331204 ring finger protein 150 [Homo sapiens]                     28   2.8  
gi|6005737 cytochrome P450, family 4, subfamily F, polypeptide 8...    27   8.0  

>gi|239743748 PREDICTED: similar to BMS1-like, ribosome assembly
           protein (yeast) [Homo sapiens]
          Length = 166

 Score =  355 bits (912), Expect = 8e-99
 Identities = 166/166 (100%), Positives = 166/166 (100%)

Query: 1   MFPMFEHAGLHSYLHLLSLGAGEKKMVGTYSEQTVELNHVEFEDQDDEARVQYEGFRPGM 60
           MFPMFEHAGLHSYLHLLSLGAGEKKMVGTYSEQTVELNHVEFEDQDDEARVQYEGFRPGM
Sbjct: 1   MFPMFEHAGLHSYLHLLSLGAGEKKMVGTYSEQTVELNHVEFEDQDDEARVQYEGFRPGM 60

Query: 61  YVRVEIENVPCEFVQNFDPLYPIILGGLGNSEGNVGHVQMRLKKHLWYKKILKSQDPIIF 120
           YVRVEIENVPCEFVQNFDPLYPIILGGLGNSEGNVGHVQMRLKKHLWYKKILKSQDPIIF
Sbjct: 61  YVRVEIENVPCEFVQNFDPLYPIILGGLGNSEGNVGHVQMRLKKHLWYKKILKSQDPIIF 120

Query: 121 SVGWRRFQTILLYYIEDHNGRQRLLKPYHSTGNWFLGNTVCQWHNA 166
           SVGWRRFQTILLYYIEDHNGRQRLLKPYHSTGNWFLGNTVCQWHNA
Sbjct: 121 SVGWRRFQTILLYYIEDHNGRQRLLKPYHSTGNWFLGNTVCQWHNA 166


>gi|239758065 PREDICTED: similar to BMS1-like, ribosome assembly
           protein [Homo sapiens]
          Length = 331

 Score =  267 bits (682), Expect = 4e-72
 Identities = 131/151 (86%), Positives = 135/151 (89%), Gaps = 2/151 (1%)

Query: 1   MFPMFEHAGLHSYLHLLSLGAGEKKMVGTYSEQTVELNHVEFEDQDDEARVQYEGFRPGM 60
           MFP+F+HAGLHSYLHL  L AGEKK V TYSEQTVELN  EFEDQDDEARV YEGFRPG+
Sbjct: 1   MFPVFKHAGLHSYLHLPCLVAGEKKTVETYSEQTVELNRTEFEDQDDEARVPYEGFRPGV 60

Query: 61  YVRVEIENVPCEFVQNFDPLYPIILGGLGNSEGNVGHVQMRLKKHLWYKKILKSQDPIIF 120
           YVRVEIENVPCEFVQNFDP YPIILGGLGNSEGNVG VQM LKKH WYKKILKS+DPIIF
Sbjct: 61  YVRVEIENVPCEFVQNFDPHYPIILGGLGNSEGNVGDVQMHLKKHRWYKKILKSRDPIIF 120

Query: 121 SVGWRRFQTILLYYIEDHNGRQRLLK--PYH 149
           SVGWRRFQTI LYYIEDHNGRQRLLK  P H
Sbjct: 121 SVGWRRFQTIPLYYIEDHNGRQRLLKYTPQH 151


>gi|239743846 PREDICTED: similar to BMS1-like, ribosome assembly
           protein (yeast) [Homo sapiens]
          Length = 175

 Score =  234 bits (596), Expect = 3e-62
 Identities = 112/115 (97%), Positives = 112/115 (97%), Gaps = 2/115 (1%)

Query: 37  LNHVEFEDQDDEARVQYEGFRPGMYVRVEIENVPCEFVQNFDPLYPIILGGLGNSEGNVG 96
           LNHVEFEDQDDEARVQYEGFRPGMYVRVEIENVPCEFVQNFDPLYPIILGGLGNSEGNVG
Sbjct: 52  LNHVEFEDQDDEARVQYEGFRPGMYVRVEIENVPCEFVQNFDPLYPIILGGLGNSEGNVG 111

Query: 97  HVQMRLKKHLWYKKILKSQDPIIFSVGWRRFQTILLYYIEDHNGRQRLLK--PYH 149
           HVQMRLKKHLWYKKILKSQDPIIFSVGWRRFQTILLYYIEDHNGRQRLLK  P H
Sbjct: 112 HVQMRLKKHLWYKKILKSQDPIIFSVGWRRFQTILLYYIEDHNGRQRLLKYTPQH 166


>gi|224589071 BMS1-like, ribosome assembly protein [Homo sapiens]
          Length = 1282

 Score =  219 bits (557), Expect = 1e-57
 Identities = 104/120 (86%), Positives = 110/120 (91%), Gaps = 2/120 (1%)

Query: 32  EQTVELNHVEFEDQDDEARVQYEGFRPGMYVRVEIENVPCEFVQNFDPLYPIILGGLGNS 91
           ++  +LN  EFEDQDDEARVQYEGFRPGMYVR+EIENVPCEFVQNFDP YPIILGGLGNS
Sbjct: 856 QKQAQLNRAEFEDQDDEARVQYEGFRPGMYVRIEIENVPCEFVQNFDPHYPIILGGLGNS 915

Query: 92  EGNVGHVQMRLKKHLWYKKILKSQDPIIFSVGWRRFQTILLYYIEDHNGRQRLLK--PYH 149
           EGNVG+VQMRLKKH WYKKILKS+DPIIFSVGWRRFQTI LYYIEDHNGRQRLLK  P H
Sbjct: 916 EGNVGYVQMRLKKHRWYKKILKSRDPIIFSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQH 975


>gi|39780588 TSR1, 20S rRNA accumulation [Homo sapiens]
          Length = 804

 Score = 37.4 bits (85), Expect = 0.006
 Identities = 22/82 (26%), Positives = 41/82 (50%)

Query: 52  QYEGFRPGMYVRVEIENVPCEFVQNFDPLYPIILGGLGNSEGNVGHVQMRLKKHLWYKKI 111
           + EG   G YV + +  VP   V+ F    P+I   L   E  +  + M +++     + 
Sbjct: 548 EVEGAEVGWYVTLHVSEVPVSVVECFRQGTPLIAFSLLPHEQKMSVLNMVVRRDPGNTEP 607

Query: 112 LKSQDPIIFSVGWRRFQTILLY 133
           +K+++ +IF  G+RRF+   L+
Sbjct: 608 VKAKEELIFHCGFRRFRASPLF 629


>gi|58331204 ring finger protein 150 [Homo sapiens]
          Length = 438

 Score = 28.5 bits (62), Expect = 2.8
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 19  LGAGEKKMVGTYSEQTVELNHVEFEDQDDEARVQYEGFRPGMYVRVEIENVPC 71
           LG   KK +     +T++    E E   D   V  EG++P   VR+    +PC
Sbjct: 248 LGDAAKKAISKLQIRTIKKGDKETESDFDNCAVCIEGYKPNDVVRI----LPC 296


>gi|6005737 cytochrome P450, family 4, subfamily F, polypeptide 8
           [Homo sapiens]
          Length = 520

 Score = 26.9 bits (58), Expect = 8.0
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 118 IIFSVGWRRFQTILLYYIEDHNGRQRLLKPYHSTGNWFLGN 158
           ++    W   + +   Y   HNGR+    P     NWFLG+
Sbjct: 23  LVVGASWLLARILAWTYAFYHNGRRLRCFPQPRKQNWFLGH 63


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.141    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,637,982
Number of Sequences: 37866
Number of extensions: 275074
Number of successful extensions: 460
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 453
Number of HSP's gapped (non-prelim): 7
length of query: 166
length of database: 18,247,518
effective HSP length: 95
effective length of query: 71
effective length of database: 14,650,248
effective search space: 1040167608
effective search space used: 1040167608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.