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Search of human proteins with 239743636
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743636 PREDICTED: hypothetical protein XP_002342910 [Homo
sapiens]
(122 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754961 PREDICTED: hypothetical protein [Homo sapiens] 250 2e-67
gi|239749500 PREDICTED: hypothetical protein [Homo sapiens] 250 2e-67
gi|239743636 PREDICTED: hypothetical protein XP_002342910 [Homo ... 250 2e-67
gi|24430192 keratin 16 [Homo sapiens] 32 0.15
gi|15431310 keratin 14 [Homo sapiens] 31 0.26
gi|239752933 PREDICTED: hypothetical protein [Homo sapiens] 30 0.45
gi|239747485 PREDICTED: hypothetical protein XP_002347546 [Homo ... 30 0.45
gi|239741357 PREDICTED: hypothetical protein XP_002342183 [Homo ... 30 0.45
gi|157817073 Cdc2-related kinase, arginine/serine-rich isoform 2... 28 1.3
gi|157817023 Cdc2-related kinase, arginine/serine-rich isoform 1... 28 1.3
gi|145309302 cell division cycle 2-like 5 isoform 1 [Homo sapiens] 28 1.3
gi|145309300 cell division cycle 2-like 5 isoform 2 [Homo sapiens] 28 1.3
gi|239755326 PREDICTED: hypothetical protein [Homo sapiens] 26 6.5
gi|239744133 PREDICTED: hypothetical protein [Homo sapiens] 26 6.5
>gi|239754961 PREDICTED: hypothetical protein [Homo sapiens]
Length = 122
Score = 250 bits (639), Expect = 2e-67
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MFLGRFVSPVLTVKASNSRCMMLASFTIPDSWTRFMKSPSCMCFLGSLNFFTWSSSFEAS 60
MFLGRFVSPVLTVKASNSRCMMLASFTIPDSWTRFMKSPSCMCFLGSLNFFTWSSSFEAS
Sbjct: 1 MFLGRFVSPVLTVKASNSRCMMLASFTIPDSWTRFMKSPSCMCFLGSLNFFTWSSSFEAS 60
Query: 61 CGLSRISLMSLISSGACSAPSHSGADMDSTVLFTKSVGKIRMSVLYRFWKSKRAFSSCPC 120
CGLSRISLMSLISSGACSAPSHSGADMDSTVLFTKSVGKIRMSVLYRFWKSKRAFSSCPC
Sbjct: 61 CGLSRISLMSLISSGACSAPSHSGADMDSTVLFTKSVGKIRMSVLYRFWKSKRAFSSCPC 120
Query: 121 IR 122
IR
Sbjct: 121 IR 122
>gi|239749500 PREDICTED: hypothetical protein [Homo sapiens]
Length = 122
Score = 250 bits (639), Expect = 2e-67
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MFLGRFVSPVLTVKASNSRCMMLASFTIPDSWTRFMKSPSCMCFLGSLNFFTWSSSFEAS 60
MFLGRFVSPVLTVKASNSRCMMLASFTIPDSWTRFMKSPSCMCFLGSLNFFTWSSSFEAS
Sbjct: 1 MFLGRFVSPVLTVKASNSRCMMLASFTIPDSWTRFMKSPSCMCFLGSLNFFTWSSSFEAS 60
Query: 61 CGLSRISLMSLISSGACSAPSHSGADMDSTVLFTKSVGKIRMSVLYRFWKSKRAFSSCPC 120
CGLSRISLMSLISSGACSAPSHSGADMDSTVLFTKSVGKIRMSVLYRFWKSKRAFSSCPC
Sbjct: 61 CGLSRISLMSLISSGACSAPSHSGADMDSTVLFTKSVGKIRMSVLYRFWKSKRAFSSCPC 120
Query: 121 IR 122
IR
Sbjct: 121 IR 122
>gi|239743636 PREDICTED: hypothetical protein XP_002342910 [Homo
sapiens]
Length = 122
Score = 250 bits (639), Expect = 2e-67
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MFLGRFVSPVLTVKASNSRCMMLASFTIPDSWTRFMKSPSCMCFLGSLNFFTWSSSFEAS 60
MFLGRFVSPVLTVKASNSRCMMLASFTIPDSWTRFMKSPSCMCFLGSLNFFTWSSSFEAS
Sbjct: 1 MFLGRFVSPVLTVKASNSRCMMLASFTIPDSWTRFMKSPSCMCFLGSLNFFTWSSSFEAS 60
Query: 61 CGLSRISLMSLISSGACSAPSHSGADMDSTVLFTKSVGKIRMSVLYRFWKSKRAFSSCPC 120
CGLSRISLMSLISSGACSAPSHSGADMDSTVLFTKSVGKIRMSVLYRFWKSKRAFSSCPC
Sbjct: 61 CGLSRISLMSLISSGACSAPSHSGADMDSTVLFTKSVGKIRMSVLYRFWKSKRAFSSCPC 120
Query: 121 IR 122
IR
Sbjct: 121 IR 122
>gi|24430192 keratin 16 [Homo sapiens]
Length = 473
Score = 31.6 bits (70), Expect = 0.15
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 10/52 (19%)
Query: 51 FTWSSSFEASCGL--------SRISLMSLISSGACSAPSHSGADMDSTVLFT 94
FT SSS + SCG+ SRIS S+++ G+C APS G + + F+
Sbjct: 8 FTSSSSMKGSCGIGGGIGGGSSRIS--SVLAGGSCRAPSTYGGGLSVSSRFS 57
>gi|15431310 keratin 14 [Homo sapiens]
Length = 472
Score = 30.8 bits (68), Expect = 0.26
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 10/45 (22%)
Query: 51 FTWSSSFEASCGL--------SRISLMSLISSGACSAPSHSGADM 87
FT SSS + SCG+ SRIS S+++ G+C APS G +
Sbjct: 8 FTSSSSMKGSCGIGGGIGGGSSRIS--SVLAGGSCRAPSTYGGGL 50
>gi|239752933 PREDICTED: hypothetical protein [Homo sapiens]
Length = 203
Score = 30.0 bits (66), Expect = 0.45
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 71 LISSGACSAPSHSGADMDSTVLFTKSVGKIRMSVLY--RFWKSKRAFSSCP 119
L SS S+ SG+D + LFT S ++ SV+ +FW + +CP
Sbjct: 114 LASSSGSSSSLVSGSDSGGSDLFTSSRARVSCSVILGPQFWDLPQGHLTCP 164
>gi|239747485 PREDICTED: hypothetical protein XP_002347546 [Homo
sapiens]
Length = 180
Score = 30.0 bits (66), Expect = 0.45
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 71 LISSGACSAPSHSGADMDSTVLFTKSVGKIRMSVLY--RFWKSKRAFSSCP 119
L SS S+ SG+D + LFT S ++ SV+ +FW + +CP
Sbjct: 91 LASSSGSSSSLVSGSDSGGSDLFTSSRARVSCSVILGPQFWDLPQGHLTCP 141
>gi|239741357 PREDICTED: hypothetical protein XP_002342183 [Homo
sapiens]
Length = 180
Score = 30.0 bits (66), Expect = 0.45
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 71 LISSGACSAPSHSGADMDSTVLFTKSVGKIRMSVLY--RFWKSKRAFSSCP 119
L SS S+ SG+D + LFT S ++ SV+ +FW + +CP
Sbjct: 91 LASSSGSSSSLVSGSDSGGSDLFTSSRARVSCSVILGPQFWDLPQGHLTCP 141
>gi|157817073 Cdc2-related kinase, arginine/serine-rich isoform 2
[Homo sapiens]
Length = 1481
Score = 28.5 bits (62), Expect = 1.3
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 40 SCMCFLGSLNFFTWSSSFEASCGLSRISLMSLISSGACSA 79
SC C LG L FT F+A+ L+++ L+S + C A
Sbjct: 921 SCGCILGEL--FTKKPIFQANLELAQLELISRLCGSPCPA 958
>gi|157817023 Cdc2-related kinase, arginine/serine-rich isoform 1
[Homo sapiens]
Length = 1490
Score = 28.5 bits (62), Expect = 1.3
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 40 SCMCFLGSLNFFTWSSSFEASCGLSRISLMSLISSGACSA 79
SC C LG L FT F+A+ L+++ L+S + C A
Sbjct: 921 SCGCILGEL--FTKKPIFQANLELAQLELISRLCGSPCPA 958
>gi|145309302 cell division cycle 2-like 5 isoform 1 [Homo sapiens]
Length = 1512
Score = 28.5 bits (62), Expect = 1.3
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 40 SCMCFLGSLNFFTWSSSFEASCGLSRISLMSLISSGACSA 79
SC C LG L FT F+A+ L+++ L+S I C A
Sbjct: 899 SCGCILGEL--FTKKPIFQANQELAQLELISRICGSPCPA 936
>gi|145309300 cell division cycle 2-like 5 isoform 2 [Homo sapiens]
Length = 1452
Score = 28.5 bits (62), Expect = 1.3
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 40 SCMCFLGSLNFFTWSSSFEASCGLSRISLMSLISSGACSA 79
SC C LG L FT F+A+ L+++ L+S I C A
Sbjct: 899 SCGCILGEL--FTKKPIFQANQELAQLELISRICGSPCPA 936
>gi|239755326 PREDICTED: hypothetical protein [Homo sapiens]
Length = 375
Score = 26.2 bits (56), Expect = 6.5
Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 8/106 (7%)
Query: 15 ASNSRCMMLASFTIPDSWTRFMKSPSCMCFLGSLNFFTWSSSFEASCGLSRISLMSLISS 74
+S C + + +W S +C C + ++S S G S S S SS
Sbjct: 164 SSTCSCQSSGTSSTSCNWQSSRTSSTCSCQSSGTSSTSYSCQ---SSGTS--STCSCQSS 218
Query: 75 GACSAPSHSGADMDSTVLFTKSVGKIRMSVLYRFWKSKRAFSSCPC 120
G S + S+ +S G S W+S R S+C C
Sbjct: 219 GTSSTSCSCQSSGTSSTCSCQSSGTSSTSCS---WQSSRTSSTCSC 261
>gi|239744133 PREDICTED: hypothetical protein [Homo sapiens]
Length = 375
Score = 26.2 bits (56), Expect = 6.5
Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 8/106 (7%)
Query: 15 ASNSRCMMLASFTIPDSWTRFMKSPSCMCFLGSLNFFTWSSSFEASCGLSRISLMSLISS 74
+S C + + +W S +C C + ++S S G S S S SS
Sbjct: 164 SSTCSCQSSGTSSTSCNWQSSRTSSTCSCQSSGTSSTSYSCQ---SSGTS--STCSCQSS 218
Query: 75 GACSAPSHSGADMDSTVLFTKSVGKIRMSVLYRFWKSKRAFSSCPC 120
G S + S+ +S G S W+S R S+C C
Sbjct: 219 GTSSTSCSCQSSGTSSTCSCQSSGTSSTSCS---WQSSRTSSTCSC 261
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.131 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,242,100
Number of Sequences: 37866
Number of extensions: 148911
Number of successful extensions: 435
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 429
Number of HSP's gapped (non-prelim): 18
length of query: 122
length of database: 18,247,518
effective HSP length: 89
effective length of query: 33
effective length of database: 14,877,444
effective search space: 490955652
effective search space used: 490955652
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.