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Search of human proteins with 239741587
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741587 PREDICTED: hypothetical protein [Homo sapiens]
(65 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753152 PREDICTED: hypothetical protein isoform 2 [Homo sap... 132 6e-32
gi|239747721 PREDICTED: hypothetical protein [Homo sapiens] 132 6e-32
gi|239741587 PREDICTED: hypothetical protein [Homo sapiens] 132 6e-32
gi|169163921 PREDICTED: hypothetical protein isoform 1 [Homo sap... 82 1e-16
gi|88954747 PREDICTED: hypothetical protein isoform 7 [Homo sapi... 82 1e-16
gi|41190403 PREDICTED: hypothetical protein isoform 1 [Homo sapi... 82 1e-16
gi|239756568 PREDICTED: similar to BCL2-associated transcription... 28 1.6
gi|169218320 PREDICTED: similar to BCL2-associated transcription... 28 1.6
gi|154354974 phosphatase and actin regulator 2 isoform 3 [Homo s... 26 6.0
gi|154354968 phosphatase and actin regulator 2 isoform 1 [Homo s... 26 6.0
gi|163937854 ataxin 7-like 1 isoform 1 [Homo sapiens] 26 6.0
gi|211971080 ataxin 7-like 1 isoform 3 [Homo sapiens] 26 6.0
gi|117938254 BCL2-associated transcription factor 1 isoform 3 [H... 26 7.8
gi|117938251 BCL2-associated transcription factor 1 isoform 2 [H... 26 7.8
gi|7661958 BCL2-associated transcription factor 1 isoform 1 [Hom... 26 7.8
gi|21361796 ELL associated factor 2 [Homo sapiens] 26 7.8
>gi|239753152 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 65
Score = 132 bits (332), Expect = 6e-32
Identities = 65/65 (100%), Positives = 65/65 (100%)
Query: 1 MSAQCTFLPLKVQEERGNPQVELTMRTVTGNSLNKRTPDHACSSSPGATSTSLSMEQDFS 60
MSAQCTFLPLKVQEERGNPQVELTMRTVTGNSLNKRTPDHACSSSPGATSTSLSMEQDFS
Sbjct: 1 MSAQCTFLPLKVQEERGNPQVELTMRTVTGNSLNKRTPDHACSSSPGATSTSLSMEQDFS 60
Query: 61 SSSED 65
SSSED
Sbjct: 61 SSSED 65
>gi|239747721 PREDICTED: hypothetical protein [Homo sapiens]
Length = 65
Score = 132 bits (332), Expect = 6e-32
Identities = 65/65 (100%), Positives = 65/65 (100%)
Query: 1 MSAQCTFLPLKVQEERGNPQVELTMRTVTGNSLNKRTPDHACSSSPGATSTSLSMEQDFS 60
MSAQCTFLPLKVQEERGNPQVELTMRTVTGNSLNKRTPDHACSSSPGATSTSLSMEQDFS
Sbjct: 1 MSAQCTFLPLKVQEERGNPQVELTMRTVTGNSLNKRTPDHACSSSPGATSTSLSMEQDFS 60
Query: 61 SSSED 65
SSSED
Sbjct: 61 SSSED 65
>gi|239741587 PREDICTED: hypothetical protein [Homo sapiens]
Length = 65
Score = 132 bits (332), Expect = 6e-32
Identities = 65/65 (100%), Positives = 65/65 (100%)
Query: 1 MSAQCTFLPLKVQEERGNPQVELTMRTVTGNSLNKRTPDHACSSSPGATSTSLSMEQDFS 60
MSAQCTFLPLKVQEERGNPQVELTMRTVTGNSLNKRTPDHACSSSPGATSTSLSMEQDFS
Sbjct: 1 MSAQCTFLPLKVQEERGNPQVELTMRTVTGNSLNKRTPDHACSSSPGATSTSLSMEQDFS 60
Query: 61 SSSED 65
SSSED
Sbjct: 61 SSSED 65
>gi|169163921 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 127
Score = 81.6 bits (200), Expect = 1e-16
Identities = 45/67 (67%), Positives = 53/67 (79%), Gaps = 2/67 (2%)
Query: 1 MSAQC-TFLPLKVQEE-RGNPQVELTMRTVTGNSLNKRTPDHACSSSPGATSTSLSMEQD 58
+S+ C T+L ++V+ R Q+ R V+GNSLNKRTPDHACSSSPGATSTSLSMEQD
Sbjct: 61 LSSDCPTWLQVRVRGSWRWKMQLGELTRQVSGNSLNKRTPDHACSSSPGATSTSLSMEQD 120
Query: 59 FSSSSED 65
FSSSSED
Sbjct: 121 FSSSSED 127
Score = 62.0 bits (149), Expect = 1e-10
Identities = 32/38 (84%), Positives = 33/38 (86%), Gaps = 3/38 (7%)
Query: 1 MSAQCTFLPLKVQEERGNPQVELTMRTVT---GNSLNK 35
MSAQCTFLPLKVQEERGNPQVELTMRTVT G S N+
Sbjct: 1 MSAQCTFLPLKVQEERGNPQVELTMRTVTALRGKSRNQ 38
>gi|88954747 PREDICTED: hypothetical protein isoform 7 [Homo
sapiens]
Length = 127
Score = 81.6 bits (200), Expect = 1e-16
Identities = 45/67 (67%), Positives = 53/67 (79%), Gaps = 2/67 (2%)
Query: 1 MSAQC-TFLPLKVQEE-RGNPQVELTMRTVTGNSLNKRTPDHACSSSPGATSTSLSMEQD 58
+S+ C T+L ++V+ R Q+ R V+GNSLNKRTPDHACSSSPGATSTSLSMEQD
Sbjct: 61 LSSDCPTWLQVRVRGSWRWKMQLGELTRQVSGNSLNKRTPDHACSSSPGATSTSLSMEQD 120
Query: 59 FSSSSED 65
FSSSSED
Sbjct: 121 FSSSSED 127
Score = 62.0 bits (149), Expect = 1e-10
Identities = 32/38 (84%), Positives = 33/38 (86%), Gaps = 3/38 (7%)
Query: 1 MSAQCTFLPLKVQEERGNPQVELTMRTVT---GNSLNK 35
MSAQCTFLPLKVQEERGNPQVELTMRTVT G S N+
Sbjct: 1 MSAQCTFLPLKVQEERGNPQVELTMRTVTALRGKSRNQ 38
>gi|41190403 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 127
Score = 81.6 bits (200), Expect = 1e-16
Identities = 45/67 (67%), Positives = 53/67 (79%), Gaps = 2/67 (2%)
Query: 1 MSAQC-TFLPLKVQEE-RGNPQVELTMRTVTGNSLNKRTPDHACSSSPGATSTSLSMEQD 58
+S+ C T+L ++V+ R Q+ R V+GNSLNKRTPDHACSSSPGATSTSLSMEQD
Sbjct: 61 LSSDCPTWLQVRVRGSWRWKMQLGELTRQVSGNSLNKRTPDHACSSSPGATSTSLSMEQD 120
Query: 59 FSSSSED 65
FSSSSED
Sbjct: 121 FSSSSED 127
Score = 62.0 bits (149), Expect = 1e-10
Identities = 32/38 (84%), Positives = 33/38 (86%), Gaps = 3/38 (7%)
Query: 1 MSAQCTFLPLKVQEERGNPQVELTMRTVT---GNSLNK 35
MSAQCTFLPLKVQEERGNPQVELTMRTVT G S N+
Sbjct: 1 MSAQCTFLPLKVQEERGNPQVELTMRTVTALRGKSRNQ 38
>gi|239756568 PREDICTED: similar to BCL2-associated transcription
factor 1 [Homo sapiens]
Length = 869
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 13 QEERGNPQVELT------MRTVTGNSLNKRTPDHACSSSPGATSTSLSMEQDFSSSSE 64
+E RG+ + E T ++ +S +KR DH+ SSS A+ +S S ++ S E
Sbjct: 713 RESRGSRKQEKTPKDYKEYKSYKDDSKHKREQDHSLSSSSSASPSSPSSREEKESKKE 770
>gi|169218320 PREDICTED: similar to BCL2-associated transcription
factor 1 isoform 2 [Homo sapiens]
Length = 869
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 13 QEERGNPQVELT------MRTVTGNSLNKRTPDHACSSSPGATSTSLSMEQDFSSSSE 64
+E RG+ + E T ++ +S +KR DH+ SSS A+ +S S ++ S E
Sbjct: 713 RESRGSRKQEKTPKDYKEYKSYKDDSKHKREQDHSLSSSSSASPSSPSSREEKESKKE 770
>gi|154354974 phosphatase and actin regulator 2 isoform 3 [Homo
sapiens]
Length = 634
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 19 PQVELTMRTVTGNSLNKRTPDHACSSSPGATSTS 52
P T R G+S +K+T S+SP +STS
Sbjct: 211 PASRNTTREAAGSSHSKKTTGSKASASPSTSSTS 244
>gi|154354968 phosphatase and actin regulator 2 isoform 1 [Homo
sapiens]
Length = 645
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 19 PQVELTMRTVTGNSLNKRTPDHACSSSPGATSTS 52
P T R G+S +K+T S+SP +STS
Sbjct: 222 PASRNTTREAAGSSHSKKTTGSKASASPSTSSTS 255
>gi|163937854 ataxin 7-like 1 isoform 1 [Homo sapiens]
Length = 861
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 9 PLKVQEERGNPQVELTMRTVTGNSLNKRTPDHACSSSPGATSTSL 53
P K + + + +L+ R+ S KR P + SSS ++S+SL
Sbjct: 618 PSKTKTSKSSKVKDLSTRSDESPSNKKRKPQSSTSSSSSSSSSSL 662
>gi|211971080 ataxin 7-like 1 isoform 3 [Homo sapiens]
Length = 738
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 9 PLKVQEERGNPQVELTMRTVTGNSLNKRTPDHACSSSPGATSTSL 53
P K + + + +L+ R+ S KR P + SSS ++S+SL
Sbjct: 494 PSKTKTSKSSKVKDLSTRSDESPSNKKRKPQSSTSSSSSSSSSSL 538
>gi|117938254 BCL2-associated transcription factor 1 isoform 3 [Homo
sapiens]
Length = 747
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 13 QEERGNPQVELTMRTVTGNSLNKRTPDHACSSSPGATSTSLSMEQDFSSSSE 64
+++ P+ ++ +S +KR DH+ SSS A+ +S S ++ S E
Sbjct: 548 RKQEKTPKDYKEYKSYKDDSKHKREQDHSRSSSSSASPSSPSSREEKESKKE 599
>gi|117938251 BCL2-associated transcription factor 1 isoform 2 [Homo
sapiens]
Length = 869
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 13 QEERGNPQVELTMRTVTGNSLNKRTPDHACSSSPGATSTSLSMEQDFSSSSE 64
+++ P+ ++ +S +KR DH+ SSS A+ +S S ++ S E
Sbjct: 719 RKQEKTPKDYKEYKSYKDDSKHKREQDHSRSSSSSASPSSPSSREEKESKKE 770
>gi|7661958 BCL2-associated transcription factor 1 isoform 1 [Homo
sapiens]
Length = 920
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 13 QEERGNPQVELTMRTVTGNSLNKRTPDHACSSSPGATSTSLSMEQDFSSSSE 64
+++ P+ ++ +S +KR DH+ SSS A+ +S S ++ S E
Sbjct: 721 RKQEKTPKDYKEYKSYKDDSKHKREQDHSRSSSSSASPSSPSSREEKESKKE 772
>gi|21361796 ELL associated factor 2 [Homo sapiens]
Length = 260
Score = 25.8 bits (55), Expect = 7.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 41 ACSSSPGATSTSLSMEQDFSSSSED 65
+C SS + S+S S +D SS SED
Sbjct: 175 SCDSSSDSKSSSSSSSEDSSSDSED 199
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.305 0.117 0.322
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,559,322
Number of Sequences: 37866
Number of extensions: 81893
Number of successful extensions: 351
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 332
Number of HSP's gapped (non-prelim): 19
length of query: 65
length of database: 18,247,518
effective HSP length: 38
effective length of query: 27
effective length of database: 16,808,610
effective search space: 453832470
effective search space used: 453832470
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.