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Search of human proteins with 239741559
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741559 PREDICTED: hypothetical protein XP_002342239 [Homo
sapiens]
(172 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753127 PREDICTED: hypothetical protein [Homo sapiens] 360 e-100
gi|239741559 PREDICTED: hypothetical protein XP_002342239 [Homo ... 360 e-100
gi|20270389 HIG1 hypoxia inducible domain family, member 2A [Hom... 33 0.16
gi|223029449 neural proliferation, differentiation and control, ... 32 0.35
gi|31083315 G protein-coupled receptor 45 [Homo sapiens] 30 1.0
gi|22547134 mitochondrial ribosomal protein L37 [Homo sapiens] 30 1.0
gi|4506509 regulator of G-protein signalling 12 isoform 2 [Homo ... 30 1.3
gi|38327601 regulator of G-protein signalling 12 isoform 1 [Homo... 30 1.3
gi|38327599 regulator of G-protein signalling 12 isoform 3 [Homo... 30 1.3
gi|239756691 PREDICTED: hypothetical protein [Homo sapiens] 27 8.7
gi|239751188 PREDICTED: hypothetical protein XP_002347742 [Homo ... 27 8.7
gi|239745676 PREDICTED: hypothetical protein XP_002343540 [Homo ... 27 8.7
>gi|239753127 PREDICTED: hypothetical protein [Homo sapiens]
Length = 172
Score = 360 bits (925), Expect = e-100
Identities = 172/172 (100%), Positives = 172/172 (100%)
Query: 1 MFRHFCRTSYTSRSARGGELASEEAAPAPRMQASWCHPLQKQANYLLPLGPEGWKPPRAH 60
MFRHFCRTSYTSRSARGGELASEEAAPAPRMQASWCHPLQKQANYLLPLGPEGWKPPRAH
Sbjct: 1 MFRHFCRTSYTSRSARGGELASEEAAPAPRMQASWCHPLQKQANYLLPLGPEGWKPPRAH 60
Query: 61 SIMGLFCTSTALAVSLSSLSWHTGNSFPARLLATWRDLVDGFAVHGLLVVRGLVERTAKR 120
SIMGLFCTSTALAVSLSSLSWHTGNSFPARLLATWRDLVDGFAVHGLLVVRGLVERTAKR
Sbjct: 61 SIMGLFCTSTALAVSLSSLSWHTGNSFPARLLATWRDLVDGFAVHGLLVVRGLVERTAKR 120
Query: 121 AQRHQLLNTHLGGQARPCLPRLTLASTHPMPCNWQGLGASRVSLSPGGDQIQ 172
AQRHQLLNTHLGGQARPCLPRLTLASTHPMPCNWQGLGASRVSLSPGGDQIQ
Sbjct: 121 AQRHQLLNTHLGGQARPCLPRLTLASTHPMPCNWQGLGASRVSLSPGGDQIQ 172
>gi|239741559 PREDICTED: hypothetical protein XP_002342239 [Homo
sapiens]
Length = 172
Score = 360 bits (925), Expect = e-100
Identities = 172/172 (100%), Positives = 172/172 (100%)
Query: 1 MFRHFCRTSYTSRSARGGELASEEAAPAPRMQASWCHPLQKQANYLLPLGPEGWKPPRAH 60
MFRHFCRTSYTSRSARGGELASEEAAPAPRMQASWCHPLQKQANYLLPLGPEGWKPPRAH
Sbjct: 1 MFRHFCRTSYTSRSARGGELASEEAAPAPRMQASWCHPLQKQANYLLPLGPEGWKPPRAH 60
Query: 61 SIMGLFCTSTALAVSLSSLSWHTGNSFPARLLATWRDLVDGFAVHGLLVVRGLVERTAKR 120
SIMGLFCTSTALAVSLSSLSWHTGNSFPARLLATWRDLVDGFAVHGLLVVRGLVERTAKR
Sbjct: 61 SIMGLFCTSTALAVSLSSLSWHTGNSFPARLLATWRDLVDGFAVHGLLVVRGLVERTAKR 120
Query: 121 AQRHQLLNTHLGGQARPCLPRLTLASTHPMPCNWQGLGASRVSLSPGGDQIQ 172
AQRHQLLNTHLGGQARPCLPRLTLASTHPMPCNWQGLGASRVSLSPGGDQIQ
Sbjct: 121 AQRHQLLNTHLGGQARPCLPRLTLASTHPMPCNWQGLGASRVSLSPGGDQIQ 172
>gi|20270389 HIG1 hypoxia inducible domain family, member 2A [Homo
sapiens]
Length = 106
Score = 32.7 bits (73), Expect = 0.16
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 58 RAHSIMGLFCTSTALAVSLSSLSWHTGNSFPARLLATWRDLVDGFAVHGLLV 109
R + ++ + C +TA A++ S+H GNS ++L+ R GF V +L+
Sbjct: 44 RENPVVPIGCLATAAALTYGLYSFHRGNSQRSQLMMRTRIAAQGFTVAAILL 95
>gi|223029449 neural proliferation, differentiation and control, 1
[Homo sapiens]
Length = 325
Score = 31.6 bits (70), Expect = 0.35
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 20 LASEEAAPAPRMQASWCHPLQKQANYLLPLGPEGWKPPRAHSIMGL-FCTSTALAVSLSS 78
L S P P S P+ ++ PL P G + ++ L FC + A A+S++S
Sbjct: 144 LPSTPGTPTPTPHTSLGSPVSSDPVHMSPLEPRGGQGDGLALVLILAFCVAGAAALSVAS 203
Query: 79 LSW 81
L W
Sbjct: 204 LCW 206
>gi|31083315 G protein-coupled receptor 45 [Homo sapiens]
Length = 372
Score = 30.0 bits (66), Expect = 1.0
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 62 IMGLFCTSTALAVSLSSLSWHTGNSFPARLLAT--WRDLVDGFAVHGLLVVRGLVERTAK 119
IM C AV+L ++ WH G+ F RL AT W +++G A+ LL++ V+R
Sbjct: 81 IMLSLCCMPFTAVTLITVRWHFGDHF-CRLSATLYWFFVLEGVAI--LLIIS--VDRFLI 135
Query: 120 RAQRHQLLN 128
QR LN
Sbjct: 136 IVQRQDKLN 144
>gi|22547134 mitochondrial ribosomal protein L37 [Homo sapiens]
Length = 423
Score = 30.0 bits (66), Expect = 1.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 32 QASWCHPLQKQANYLLPLGPEGWKPPRAHSIMGLFCTSTA 71
Q WC P+ K+ + P+GP G+KP + L+ A
Sbjct: 384 QHFWCLPVIKKRVVVEPVGPVGFKPETFRKFLALYLHGAA 423
>gi|4506509 regulator of G-protein signalling 12 isoform 2 [Homo
sapiens]
Length = 1376
Score = 29.6 bits (65), Expect = 1.3
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 10 YTSRSARGG--ELASEEAAPAPRMQASWCHPLQKQANYLLPLGPEGWKPPRAHSIMGLFC 67
++ RSA G E AS+ +Q S P + P GP G PP S G FC
Sbjct: 1241 FSKRSATGNGRESASQPGEQWEPVQESSDSPSTSPGSASSPPGPPGTTPPGQKSPSGPFC 1300
Query: 68 T 68
T
Sbjct: 1301 T 1301
>gi|38327601 regulator of G-protein signalling 12 isoform 1 [Homo
sapiens]
Length = 1447
Score = 29.6 bits (65), Expect = 1.3
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 10 YTSRSARGG--ELASEEAAPAPRMQASWCHPLQKQANYLLPLGPEGWKPPRAHSIMGLFC 67
++ RSA G E AS+ +Q S P + P GP G PP S G FC
Sbjct: 1241 FSKRSATGNGRESASQPGEQWEPVQESSDSPSTSPGSASSPPGPPGTTPPGQKSPSGPFC 1300
Query: 68 T 68
T
Sbjct: 1301 T 1301
>gi|38327599 regulator of G-protein signalling 12 isoform 3 [Homo
sapiens]
Length = 799
Score = 29.6 bits (65), Expect = 1.3
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 10 YTSRSARGG--ELASEEAAPAPRMQASWCHPLQKQANYLLPLGPEGWKPPRAHSIMGLFC 67
++ RSA G E AS+ +Q S P + P GP G PP S G FC
Sbjct: 593 FSKRSATGNGRESASQPGEQWEPVQESSDSPSTSPGSASSPPGPPGTTPPGQKSPSGPFC 652
Query: 68 T 68
T
Sbjct: 653 T 653
>gi|239756691 PREDICTED: hypothetical protein [Homo sapiens]
Length = 319
Score = 26.9 bits (58), Expect = 8.7
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 16 RGGELASEEAAPAPRMQASWCHPLQKQANYLLPLG 50
+GG+L EE P+P + H L QA L+P+G
Sbjct: 204 QGGQLHKEEGRPSPVLHEG-VHQLLAQAAELVPVG 237
>gi|239751188 PREDICTED: hypothetical protein XP_002347742 [Homo
sapiens]
Length = 319
Score = 26.9 bits (58), Expect = 8.7
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 16 RGGELASEEAAPAPRMQASWCHPLQKQANYLLPLG 50
+GG+L EE P+P + H L QA L+P+G
Sbjct: 204 QGGQLHKEEGRPSPVLHEG-VHQLLAQAAELVPVG 237
>gi|239745676 PREDICTED: hypothetical protein XP_002343540 [Homo
sapiens]
Length = 319
Score = 26.9 bits (58), Expect = 8.7
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 16 RGGELASEEAAPAPRMQASWCHPLQKQANYLLPLG 50
+GG+L EE P+P + H L QA L+P+G
Sbjct: 204 QGGQLHKEEGRPSPVLHEG-VHQLLAQAAELVPVG 237
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.133 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,305,033
Number of Sequences: 37866
Number of extensions: 312475
Number of successful extensions: 755
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 747
Number of HSP's gapped (non-prelim): 12
length of query: 172
length of database: 18,247,518
effective HSP length: 95
effective length of query: 77
effective length of database: 14,650,248
effective search space: 1128069096
effective search space used: 1128069096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.