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Search of human proteins with 239740658
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239740658 PREDICTED: hypothetical protein [Homo sapiens]
(155 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239740924 PREDICTED: hypothetical protein XP_002344098 [Homo ... 319 5e-88
gi|239740802 PREDICTED: hypothetical protein [Homo sapiens] 319 5e-88
gi|239740658 PREDICTED: hypothetical protein [Homo sapiens] 319 5e-88
gi|239740701 PREDICTED: hypothetical protein [Homo sapiens] 312 6e-86
gi|4826665 copper chaperone for superoxide dismutase [Homo sapiens] 30 1.1
gi|18426904 Werner helicase interacting protein isoform 2 [Homo ... 28 2.4
gi|18426902 Werner helicase interacting protein isoform 1 [Homo ... 28 2.4
gi|219802232 solute carrier family 13, member 5 isoform b [Homo ... 28 4.1
gi|29171306 solute carrier family 13, member 5 isoform a [Homo s... 28 4.1
gi|239745624 PREDICTED: hypothetical protein XP_002344159 [Homo ... 27 5.4
gi|239741026 PREDICTED: hypothetical protein XP_002342071 [Homo ... 27 5.4
gi|134268640 tectorin alpha precursor [Homo sapiens] 27 5.4
gi|194272183 G protein-coupled receptor 124 [Homo sapiens] 27 5.4
gi|4885323 G protein-coupled receptor 37 [Homo sapiens] 27 9.2
gi|239752199 PREDICTED: hypothetical protein XP_002348146 [Homo ... 27 9.2
gi|239746724 PREDICTED: hypothetical protein XP_002343820 [Homo ... 27 9.2
gi|22035562 RNA polymerase III transcription initiation factor B... 27 9.2
>gi|239740924 PREDICTED: hypothetical protein XP_002344098 [Homo
sapiens]
Length = 155
Score = 319 bits (818), Expect = 5e-88
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MRFGSGLRSLRSAASAVDSHIHVTCGFALFHSGIDDVPHFYLPVGWSRFSFIKSVGVGLR 60
MRFGSGLRSLRSAASAVDSHIHVTCGFALFHSGIDDVPHFYLPVGWSRFSFIKSVGVGLR
Sbjct: 1 MRFGSGLRSLRSAASAVDSHIHVTCGFALFHSGIDDVPHFYLPVGWSRFSFIKSVGVGLR 60
Query: 61 AGRLEGARARVLEGGSQVAGPQQSLCDSLFRCFSSAKREKTEPGSWDWRSGKRSIGTTAL 120
AGRLEGARARVLEGGSQVAGPQQSLCDSLFRCFSSAKREKTEPGSWDWRSGKRSIGTTAL
Sbjct: 61 AGRLEGARARVLEGGSQVAGPQQSLCDSLFRCFSSAKREKTEPGSWDWRSGKRSIGTTAL 120
Query: 121 GPGKTQTLQSQCLLQPAQGRDNLAPSISGRRGDPP 155
GPGKTQTLQSQCLLQPAQGRDNLAPSISGRRGDPP
Sbjct: 121 GPGKTQTLQSQCLLQPAQGRDNLAPSISGRRGDPP 155
>gi|239740802 PREDICTED: hypothetical protein [Homo sapiens]
Length = 155
Score = 319 bits (818), Expect = 5e-88
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MRFGSGLRSLRSAASAVDSHIHVTCGFALFHSGIDDVPHFYLPVGWSRFSFIKSVGVGLR 60
MRFGSGLRSLRSAASAVDSHIHVTCGFALFHSGIDDVPHFYLPVGWSRFSFIKSVGVGLR
Sbjct: 1 MRFGSGLRSLRSAASAVDSHIHVTCGFALFHSGIDDVPHFYLPVGWSRFSFIKSVGVGLR 60
Query: 61 AGRLEGARARVLEGGSQVAGPQQSLCDSLFRCFSSAKREKTEPGSWDWRSGKRSIGTTAL 120
AGRLEGARARVLEGGSQVAGPQQSLCDSLFRCFSSAKREKTEPGSWDWRSGKRSIGTTAL
Sbjct: 61 AGRLEGARARVLEGGSQVAGPQQSLCDSLFRCFSSAKREKTEPGSWDWRSGKRSIGTTAL 120
Query: 121 GPGKTQTLQSQCLLQPAQGRDNLAPSISGRRGDPP 155
GPGKTQTLQSQCLLQPAQGRDNLAPSISGRRGDPP
Sbjct: 121 GPGKTQTLQSQCLLQPAQGRDNLAPSISGRRGDPP 155
>gi|239740658 PREDICTED: hypothetical protein [Homo sapiens]
Length = 155
Score = 319 bits (818), Expect = 5e-88
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MRFGSGLRSLRSAASAVDSHIHVTCGFALFHSGIDDVPHFYLPVGWSRFSFIKSVGVGLR 60
MRFGSGLRSLRSAASAVDSHIHVTCGFALFHSGIDDVPHFYLPVGWSRFSFIKSVGVGLR
Sbjct: 1 MRFGSGLRSLRSAASAVDSHIHVTCGFALFHSGIDDVPHFYLPVGWSRFSFIKSVGVGLR 60
Query: 61 AGRLEGARARVLEGGSQVAGPQQSLCDSLFRCFSSAKREKTEPGSWDWRSGKRSIGTTAL 120
AGRLEGARARVLEGGSQVAGPQQSLCDSLFRCFSSAKREKTEPGSWDWRSGKRSIGTTAL
Sbjct: 61 AGRLEGARARVLEGGSQVAGPQQSLCDSLFRCFSSAKREKTEPGSWDWRSGKRSIGTTAL 120
Query: 121 GPGKTQTLQSQCLLQPAQGRDNLAPSISGRRGDPP 155
GPGKTQTLQSQCLLQPAQGRDNLAPSISGRRGDPP
Sbjct: 121 GPGKTQTLQSQCLLQPAQGRDNLAPSISGRRGDPP 155
>gi|239740701 PREDICTED: hypothetical protein [Homo sapiens]
Length = 155
Score = 312 bits (800), Expect = 6e-86
Identities = 152/155 (98%), Positives = 152/155 (98%)
Query: 1 MRFGSGLRSLRSAASAVDSHIHVTCGFALFHSGIDDVPHFYLPVGWSRFSFIKSVGVGLR 60
MRFGSGLRSLRSAASAVDSHIH TCGF LFHSGI DVPHFYLPVGWSRFSFIKSVGVGLR
Sbjct: 1 MRFGSGLRSLRSAASAVDSHIHGTCGFGLFHSGIHDVPHFYLPVGWSRFSFIKSVGVGLR 60
Query: 61 AGRLEGARARVLEGGSQVAGPQQSLCDSLFRCFSSAKREKTEPGSWDWRSGKRSIGTTAL 120
AGRLEGARARVLEGGSQVAGPQQSLCDSLFRCFSSAKREKTEPGSWDWRSGKRSIGTTAL
Sbjct: 61 AGRLEGARARVLEGGSQVAGPQQSLCDSLFRCFSSAKREKTEPGSWDWRSGKRSIGTTAL 120
Query: 121 GPGKTQTLQSQCLLQPAQGRDNLAPSISGRRGDPP 155
GPGKTQTLQSQCLLQPAQGRDNLAPSISGRRGDPP
Sbjct: 121 GPGKTQTLQSQCLLQPAQGRDNLAPSISGRRGDPP 155
>gi|4826665 copper chaperone for superoxide dismutase [Homo sapiens]
Length = 274
Score = 29.6 bits (65), Expect = 1.1
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
Query: 8 RSLRSAASAVDSHIHVTCGFALFHSGIDDVPHFYLPVGWSRFSFIKSVGVGLRAGRLE-- 65
+SL+ A D +H+ L H+ + L G R + +K +G +G+L+
Sbjct: 31 KSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMG----SGQLQNL 86
Query: 66 GARARVLEGGSQVAGPQQSLCDSLFRCFSSAKREKTEPG 104
GA +L G V G + L + RC + EPG
Sbjct: 87 GAAVAILGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPG 125
>gi|18426904 Werner helicase interacting protein isoform 2 [Homo
sapiens]
Length = 640
Score = 28.5 bits (62), Expect = 2.4
Identities = 19/73 (26%), Positives = 29/73 (39%)
Query: 81 PQQSLCDSLFRCFSSAKREKTEPGSWDWRSGKRSIGTTALGPGKTQTLQSQCLLQPAQGR 140
P + L RC EP + R+G+R+ G + G + + +S L QPA
Sbjct: 28 PAAHINSHLDRCLLLHPAGHAEPAAGSHRAGERAKGPSPPGAKRRRLSESSALKQPATPT 87
Query: 141 DNLAPSISGRRGD 153
+ G GD
Sbjct: 88 AAESSEGEGEEGD 100
>gi|18426902 Werner helicase interacting protein isoform 1 [Homo
sapiens]
Length = 665
Score = 28.5 bits (62), Expect = 2.4
Identities = 19/73 (26%), Positives = 29/73 (39%)
Query: 81 PQQSLCDSLFRCFSSAKREKTEPGSWDWRSGKRSIGTTALGPGKTQTLQSQCLLQPAQGR 140
P + L RC EP + R+G+R+ G + G + + +S L QPA
Sbjct: 28 PAAHINSHLDRCLLLHPAGHAEPAAGSHRAGERAKGPSPPGAKRRRLSESSALKQPATPT 87
Query: 141 DNLAPSISGRRGD 153
+ G GD
Sbjct: 88 AAESSEGEGEEGD 100
>gi|219802232 solute carrier family 13, member 5 isoform b [Homo
sapiens]
Length = 522
Score = 27.7 bits (60), Expect = 4.1
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 41 YLPVGWSRFSFIKSVGVGLRAGRLEGARARVLEGGSQVAGPQQSLCDSLFRCF 93
+L + RF+F KS G GL + + E A +VL+ + GP ++ CF
Sbjct: 271 WLQFVYMRFNFKKSWGCGLESKKNEKAALKVLQEEYRKLGPLSFAEINVLICF 323
>gi|29171306 solute carrier family 13, member 5 isoform a [Homo
sapiens]
Length = 568
Score = 27.7 bits (60), Expect = 4.1
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 41 YLPVGWSRFSFIKSVGVGLRAGRLEGARARVLEGGSQVAGPQQSLCDSLFRCF 93
+L + RF+F KS G GL + + E A +VL+ + GP ++ CF
Sbjct: 271 WLQFVYMRFNFKKSWGCGLESKKNEKAALKVLQEEYRKLGPLSFAEINVLICF 323
>gi|239745624 PREDICTED: hypothetical protein XP_002344159 [Homo
sapiens]
Length = 165
Score = 27.3 bits (59), Expect = 5.4
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 12/75 (16%)
Query: 54 SVGVGLRAGRLEGARARVLEGGSQVAGPQQSLCDSLFRCFSSAKREKTEPGSW------- 106
+ G+G R R EGARA GG A P F C +R + +P W
Sbjct: 69 AAGMGARRVRAEGARAG--GGGDGYAAPASCERGGGFHC---GRRARGDPRPWPAPPPRA 123
Query: 107 DWRSGKRSIGTTALG 121
W +R + A+G
Sbjct: 124 HWPPRRRPASSLAVG 138
>gi|239741026 PREDICTED: hypothetical protein XP_002342071 [Homo
sapiens]
Length = 455
Score = 27.3 bits (59), Expect = 5.4
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 97 KREKTEPGSWDWRSGKRSIGTTALGPGKTQTLQSQCLLQPAQGRDNLAPSIS 148
+ + + G W + R +G T + G C L P Q R+ L S+S
Sbjct: 139 REAEEQAGCCTWCAPDRQLGRTVMARGSLVLTGLPCQLLPEQKREQLQGSLS 190
>gi|134268640 tectorin alpha precursor [Homo sapiens]
Length = 2155
Score = 27.3 bits (59), Expect = 5.4
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 77 QVAGPQQSLCDSLFRCFSSAKREKTEPGSW 106
Q G + LCDS+ R S+ K E G W
Sbjct: 945 QSGGNESELCDSVARYASACKNADVEVGPW 974
>gi|194272183 G protein-coupled receptor 124 [Homo sapiens]
Length = 1338
Score = 27.3 bits (59), Expect = 5.4
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 19/103 (18%)
Query: 53 KSVGVGLRAGRLEGA-RARVLEGGSQVAGPQQSLCDSLFRCFSSAKREKTEPGSWDWRSG 111
KS G RAG G R + L GG+ AG + L +E GS
Sbjct: 1184 KSRAKGHRAGEACGKNRLKALRGGA--AGALELL--------------SSESGSLHNSPT 1227
Query: 112 KRSIGTTALGPGKTQTLQSQCLLQPAQGRDNLAPSIS--GRRG 152
+G++ PG L+ + +L P++G D A +S GR G
Sbjct: 1228 DSYLGSSRNSPGAGLQLEGEPMLTPSEGSDTSAAPLSEAGRAG 1270
>gi|4885323 G protein-coupled receptor 37 [Homo sapiens]
Length = 613
Score = 26.6 bits (57), Expect = 9.2
Identities = 13/48 (27%), Positives = 19/48 (39%)
Query: 103 PGSWDWRSGKRSIGTTALGPGKTQTLQSQCLLQPAQGRDNLAPSISGR 150
PG W W+ + + LG G LQ + + + ISGR
Sbjct: 117 PGPWRWKGARGQEPSETLGRGNPTALQLFLQISEEEEKGPRGAGISGR 164
>gi|239752199 PREDICTED: hypothetical protein XP_002348146 [Homo
sapiens]
Length = 220
Score = 26.6 bits (57), Expect = 9.2
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 43 PVGWSRFSFIKSVGVGLRAGRLEGARARVLEGG 75
PVG + S + V G G ++GA ARVL GG
Sbjct: 127 PVGQAHHSHGQQVA-GSEGGHVQGAAARVLPGG 158
>gi|239746724 PREDICTED: hypothetical protein XP_002343820 [Homo
sapiens]
Length = 220
Score = 26.6 bits (57), Expect = 9.2
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 43 PVGWSRFSFIKSVGVGLRAGRLEGARARVLEGG 75
PVG + S + V G G ++GA ARVL GG
Sbjct: 127 PVGQAHHSHGQQVA-GSEGGHVQGAAARVLPGG 158
>gi|22035562 RNA polymerase III transcription initiation factor BRF2
[Homo sapiens]
Length = 419
Score = 26.6 bits (57), Expect = 9.2
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 82 QQSLCDSLFRCFSSA--KREKTEPGSWDWRSGKRSIGTTALGPGKTQTLQSQCLLQP 136
+QSL S FR ++ REK PG W G+ +G +LG + + S LL P
Sbjct: 304 RQSLVRSAFRDGTAEVETREKEPPG-WGQGQGEGEVGNNSLGLPQGKRPASPALLLP 359
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,458,275
Number of Sequences: 37866
Number of extensions: 281726
Number of successful extensions: 631
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 620
Number of HSP's gapped (non-prelim): 17
length of query: 155
length of database: 18,247,518
effective HSP length: 93
effective length of query: 62
effective length of database: 14,725,980
effective search space: 913010760
effective search space used: 913010760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.