Search of human proteins with 239735508

Search of human proteins with 239735508

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239735508 nucleoredoxin-like 2 isoform 1 [Homo sapiens]
         (156 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239735508 nucleoredoxin-like 2 isoform 1 [Homo sapiens]            317   3e-87
gi|239735607 nucleoredoxin-like 2 isoform 2 [Homo sapiens]            205   1e-53
gi|19923987 nucleoredoxin-like 1 [Homo sapiens]                       101   3e-22
gi|33149331 nucleoredoxin [Homo sapiens]                               71   4e-13
gi|14149694 retina specific protein PAL [Homo sapiens]                 27   5.4  
gi|50811889 centrosomal protein 192kDa [Homo sapiens]                  27   7.0  
gi|194018488 peroxisomal biogenesis factor 6 [Homo sapiens]            27   9.2  

>gi|239735508 nucleoredoxin-like 2 isoform 1 [Homo sapiens]
          Length = 156

 Score =  317 bits (812), Expect = 3e-87
 Identities = 156/156 (100%), Positives = 156/156 (100%)

Query: 1   MVDILGERHLVTCKGATVEAEAALQNKVVALYFAAARCAPSRDFTPLLCDFYTALVAEAR 60
           MVDILGERHLVTCKGATVEAEAALQNKVVALYFAAARCAPSRDFTPLLCDFYTALVAEAR
Sbjct: 1   MVDILGERHLVTCKGATVEAEAALQNKVVALYFAAARCAPSRDFTPLLCDFYTALVAEAR 60

Query: 61  RPAPFEVVFVSADGSSQEMLDFMRELHGAWLALPFHDPYRHELRKRYNVTAIPKLVIVKQ 120
           RPAPFEVVFVSADGSSQEMLDFMRELHGAWLALPFHDPYRHELRKRYNVTAIPKLVIVKQ
Sbjct: 61  RPAPFEVVFVSADGSSQEMLDFMRELHGAWLALPFHDPYRHELRKRYNVTAIPKLVIVKQ 120

Query: 121 NGEVITNKGRKQIRERGLACFQDWVEAADIFQNFSV 156
           NGEVITNKGRKQIRERGLACFQDWVEAADIFQNFSV
Sbjct: 121 NGEVITNKGRKQIRERGLACFQDWVEAADIFQNFSV 156


>gi|239735607 nucleoredoxin-like 2 isoform 2 [Homo sapiens]
          Length = 135

 Score =  205 bits (522), Expect = 1e-53
 Identities = 100/100 (100%), Positives = 100/100 (100%)

Query: 1   MVDILGERHLVTCKGATVEAEAALQNKVVALYFAAARCAPSRDFTPLLCDFYTALVAEAR 60
           MVDILGERHLVTCKGATVEAEAALQNKVVALYFAAARCAPSRDFTPLLCDFYTALVAEAR
Sbjct: 1   MVDILGERHLVTCKGATVEAEAALQNKVVALYFAAARCAPSRDFTPLLCDFYTALVAEAR 60

Query: 61  RPAPFEVVFVSADGSSQEMLDFMRELHGAWLALPFHDPYR 100
           RPAPFEVVFVSADGSSQEMLDFMRELHGAWLALPFHDPYR
Sbjct: 61  RPAPFEVVFVSADGSSQEMLDFMRELHGAWLALPFHDPYR 100


>gi|19923987 nucleoredoxin-like 1 [Homo sapiens]
          Length = 212

 Score =  101 bits (251), Expect = 3e-22
 Identities = 49/141 (34%), Positives = 84/141 (59%), Gaps = 3/141 (2%)

Query: 19  EAEAALQNKVVALYFAAARCAPSRDFTPLLCDFYTALVAE--ARRPAPFEVVFVSADGSS 76
           E    L+N++V L+F A  C   + F P+L DF+  L  E    R A   +V+VS D + 
Sbjct: 25  EVSRRLENRLVLLFFGAGACPQCQAFVPILKDFFVRLTDEFYVLRAAQLALVYVSQDSTE 84

Query: 77  QEMLDFMRELHGAWLALPFHDPYRHELRKRYNVTAIPKLVIVKQNGEVITNKGRKQIRER 136
           ++   F++++   WL LPF D  R +L ++++V  +P +V++K +G+V+T  G  +I+  
Sbjct: 85  EQQDLFLKDMPKKWLFLPFEDDLRRDLGRQFSVERLPAVVVLKPDGDVLTRDGADEIQRL 144

Query: 137 GLACFQDWVEAADIF-QNFSV 156
           G ACF +W EAA++  +NF +
Sbjct: 145 GTACFANWQEAAEVLDRNFQL 165


>gi|33149331 nucleoredoxin [Homo sapiens]
          Length = 435

 Score = 70.9 bits (172), Expect = 4e-13
 Identities = 41/125 (32%), Positives = 69/125 (55%), Gaps = 7/125 (5%)

Query: 10  LVTCKGATVEAEAALQNKVVALYFAAARCAPSRDFTPLLCDFYTALVAEARRPAPFEVVF 69
           L+   G ++E+ ++L+   V +YF+A  C P R  T +L + Y  +    +    FE++F
Sbjct: 178 LLRNNGQSLES-SSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQN---FEIIF 233

Query: 70  VSADGSSQEMLDFMRELHGAWLALPFHDPYRHE-LRKRYNVTAIPKLVIVKQNGEVITNK 128
           VSAD S +    +  E+   WLA+P+ D  R   L + Y +  IP L+++   GEVIT +
Sbjct: 234 VSADRSEESFKQYFSEM--PWLAVPYTDEARRSRLNRLYGIQGIPTLIMLDPQGEVITRQ 291

Query: 129 GRKQI 133
           GR ++
Sbjct: 292 GRVEV 296



 Score = 57.4 bits (137), Expect = 5e-09
 Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 23/153 (15%)

Query: 3   DILGERHLVTCKGATVEAEA--ALQNKVVALYFAAARCAPSRDFTPLLCDFYTALVAEAR 60
           ++LGE+ LVT  G  V+  +  A    ++ LYF  +  AP    +  L  FY  L  +A 
Sbjct: 7   ELLGEK-LVTGGGEEVDVHSLGARGISLLGLYFGCSLSAPCAQLSASLAAFYGRLRGDAA 65

Query: 61  R-PAP---------------FEVVFVSADGSSQEMLDFMRELHGAWLALPFHDPYRH-EL 103
             P P                E+VFVS+D   ++  DF+R++   WLALP+ + +R  +L
Sbjct: 66  AGPGPGAGAGAAAEPEPRRRLEIVFVSSDQDQRQWQDFVRDM--PWLALPYKEKHRKLKL 123

Query: 104 RKRYNVTAIPKLVIV-KQNGEVITNKGRKQIRE 135
             +Y ++ IP L+ +    G+V+   G   IR+
Sbjct: 124 WNKYRISNIPSLIFLDATTGKVVCRNGLLVIRD 156


>gi|14149694 retina specific protein PAL [Homo sapiens]
          Length = 623

 Score = 27.3 bits (59), Expect = 5.4
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 9/81 (11%)

Query: 26  NKVVALYFAAARCAPSRDFTPLLCDFYTALVAEARRPAPFEVVFVSADGSSQEMLDFMRE 85
           N++ A  +AA R AP      L  +  +A+ AEA R   F       D SS +++   +E
Sbjct: 117 NRLAAFPWAALRDAPKLRLLDLQANRLSAVPAEAAR---FLENLTFLDLSSNQLMRLPQE 173

Query: 86  LHGAWLAL------PFHDPYR 100
           L  +W  L      P H P R
Sbjct: 174 LIVSWAHLETGIFPPGHHPRR 194


>gi|50811889 centrosomal protein 192kDa [Homo sapiens]
          Length = 1941

 Score = 26.9 bits (58), Expect = 7.0
 Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 13/123 (10%)

Query: 2   VDILGERHLVTCKGATVEAEAALQNKVVALYFAAA--RCAPSRDFTPLLCDFYTALVAEA 59
           VD+   R LV    A +   A  + KV+ +  +    RC  S    P   D  T + AEA
Sbjct: 824 VDLSTYRCLVFKNKAIIRPHATEEIKVLFIPSSPGVFRCTFSVASWPCSTDAETIVQAEA 883

Query: 60  RRP-----APFEVVFVSADGSSQEMLDFMRELHGAWLALPFHDPYRHELRKRYNVTAIPK 114
                   A  E   +  +   +++LDF    +G W ALP       +L  R + T   +
Sbjct: 884 LASTVTLTAIAESPVIEVETEKKDVLDFGDLTYGGWKALPL------KLINRTHATVPIR 937

Query: 115 LVI 117
           L+I
Sbjct: 938 LII 940


>gi|194018488 peroxisomal biogenesis factor 6 [Homo sapiens]
          Length = 980

 Score = 26.6 bits (57), Expect = 9.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 11  VTCKGATVEAEAALQNKVVALYFAAARCAPS 41
           V C     E+  A++ K+ A++  A RC P+
Sbjct: 494 VPCSSLCAESSGAVETKLQAIFSRARRCRPA 524


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,600,333
Number of Sequences: 37866
Number of extensions: 212135
Number of successful extensions: 414
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 403
Number of HSP's gapped (non-prelim): 8
length of query: 156
length of database: 18,247,518
effective HSP length: 94
effective length of query: 62
effective length of database: 14,688,114
effective search space: 910663068
effective search space used: 910663068
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.