BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|23308515 hypothetical protein LOC133686 isoform 2 [Homo sapiens] (279 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|146134341 hypothetical protein LOC133686 isoform 1 [Homo sapi... 563 e-161 gi|23308515 hypothetical protein LOC133686 isoform 2 [Homo sapiens] 563 e-161 gi|4506501 regulatory factor X-associated protein [Homo sapiens] 35 0.073 gi|4826908 phosphoinositide-3-kinase, regulatory subunit 2 (beta... 32 0.80 gi|187475373 c-src tyrosine kinase [Homo sapiens] 28 6.8 gi|4758078 c-src tyrosine kinase [Homo sapiens] 28 6.8 gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens] 28 8.9 gi|239756943 PREDICTED: hypothetical protein [Homo sapiens] 28 8.9 gi|239751443 PREDICTED: hypothetical protein [Homo sapiens] 28 8.9 gi|239745948 PREDICTED: hypothetical protein XP_002343622 [Homo ... 28 8.9 >gi|146134341 hypothetical protein LOC133686 isoform 1 [Homo sapiens] Length = 442 Score = 563 bits (1450), Expect = e-161 Identities = 279/279 (100%), Positives = 279/279 (100%) Query: 1 MLLAASKVLDRLKPVIGVNTDPERSEGHLCLPVRYTHSFPEALQKFYRGEFRWLWRQRIR 60 MLLAASKVLDRLKPVIGVNTDPERSEGHLCLPVRYTHSFPEALQKFYRGEFRWLWRQRIR Sbjct: 164 MLLAASKVLDRLKPVIGVNTDPERSEGHLCLPVRYTHSFPEALQKFYRGEFRWLWRQRIR 223 Query: 61 LYLEGTGINPVPVDLHEQQLSLNQHNRALNIERAHDERSEASGPQLLPVRALNEVFIGES 120 LYLEGTGINPVPVDLHEQQLSLNQHNRALNIERAHDERSEASGPQLLPVRALNEVFIGES Sbjct: 224 LYLEGTGINPVPVDLHEQQLSLNQHNRALNIERAHDERSEASGPQLLPVRALNEVFIGES 283 Query: 121 LSSRASYYEISVDDGPWEKQKSSGLNLCTGTGSKAWSFNINRVATQAVEDVLNIAKRQGN 180 LSSRASYYEISVDDGPWEKQKSSGLNLCTGTGSKAWSFNINRVATQAVEDVLNIAKRQGN Sbjct: 284 LSSRASYYEISVDDGPWEKQKSSGLNLCTGTGSKAWSFNINRVATQAVEDVLNIAKRQGN 343 Query: 181 LSLPLNRELVEKVTNEYNESLLYSPEEPKILFSIREPIANRVFSSSRQRCFSSKVCVRSR 240 LSLPLNRELVEKVTNEYNESLLYSPEEPKILFSIREPIANRVFSSSRQRCFSSKVCVRSR Sbjct: 344 LSLPLNRELVEKVTNEYNESLLYSPEEPKILFSIREPIANRVFSSSRQRCFSSKVCVRSR 403 Query: 241 CWDACMVVDGGTSFEFNDGAIASMMINKEDELRTVLLEQ 279 CWDACMVVDGGTSFEFNDGAIASMMINKEDELRTVLLEQ Sbjct: 404 CWDACMVVDGGTSFEFNDGAIASMMINKEDELRTVLLEQ 442 >gi|23308515 hypothetical protein LOC133686 isoform 2 [Homo sapiens] Length = 279 Score = 563 bits (1450), Expect = e-161 Identities = 279/279 (100%), Positives = 279/279 (100%) Query: 1 MLLAASKVLDRLKPVIGVNTDPERSEGHLCLPVRYTHSFPEALQKFYRGEFRWLWRQRIR 60 MLLAASKVLDRLKPVIGVNTDPERSEGHLCLPVRYTHSFPEALQKFYRGEFRWLWRQRIR Sbjct: 1 MLLAASKVLDRLKPVIGVNTDPERSEGHLCLPVRYTHSFPEALQKFYRGEFRWLWRQRIR 60 Query: 61 LYLEGTGINPVPVDLHEQQLSLNQHNRALNIERAHDERSEASGPQLLPVRALNEVFIGES 120 LYLEGTGINPVPVDLHEQQLSLNQHNRALNIERAHDERSEASGPQLLPVRALNEVFIGES Sbjct: 61 LYLEGTGINPVPVDLHEQQLSLNQHNRALNIERAHDERSEASGPQLLPVRALNEVFIGES 120 Query: 121 LSSRASYYEISVDDGPWEKQKSSGLNLCTGTGSKAWSFNINRVATQAVEDVLNIAKRQGN 180 LSSRASYYEISVDDGPWEKQKSSGLNLCTGTGSKAWSFNINRVATQAVEDVLNIAKRQGN Sbjct: 121 LSSRASYYEISVDDGPWEKQKSSGLNLCTGTGSKAWSFNINRVATQAVEDVLNIAKRQGN 180 Query: 181 LSLPLNRELVEKVTNEYNESLLYSPEEPKILFSIREPIANRVFSSSRQRCFSSKVCVRSR 240 LSLPLNRELVEKVTNEYNESLLYSPEEPKILFSIREPIANRVFSSSRQRCFSSKVCVRSR Sbjct: 181 LSLPLNRELVEKVTNEYNESLLYSPEEPKILFSIREPIANRVFSSSRQRCFSSKVCVRSR 240 Query: 241 CWDACMVVDGGTSFEFNDGAIASMMINKEDELRTVLLEQ 279 CWDACMVVDGGTSFEFNDGAIASMMINKEDELRTVLLEQ Sbjct: 241 CWDACMVVDGGTSFEFNDGAIASMMINKEDELRTVLLEQ 279 >gi|4506501 regulatory factor X-associated protein [Homo sapiens] Length = 272 Score = 35.0 bits (79), Expect = 0.073 Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 4/95 (4%) Query: 137 WEKQKSSGLNLCTGTGSKAWSFNINRVATQAVEDVLNIAK-RQGNLS-LPLNRELVEKVT 194 ++K+KS C GT S + N+ ++ +++L+I K R G+ P L+E+V Sbjct: 174 YKKKKSDQALNCGGTASTGSAGNVK--LEESADNILSIVKQRTGSFGDRPARPTLLEQVL 231 Query: 195 NEYNESLLYSPEEPKILFSIREPIANRVFSSSRQR 229 N+ SLL SPE + L ++ + +V +Q+ Sbjct: 232 NQKRLSLLRSPEVVQFLQKQQQLLNQQVLEQRQQQ 266 >gi|4826908 phosphoinositide-3-kinase, regulatory subunit 2 (beta) [Homo sapiens] Length = 728 Score = 31.6 bits (70), Expect = 0.80 Identities = 15/30 (50%), Positives = 17/30 (56%) Query: 75 LHEQQLSLNQHNRALNIERAHDERSEASGP 104 LH Q SL QHN AL + AH R+ GP Sbjct: 694 LHYQHASLVQHNDALTVTLAHPVRAPGPGP 723 >gi|187475373 c-src tyrosine kinase [Homo sapiens] Length = 450 Score = 28.5 bits (62), Expect = 6.8 Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 5/79 (6%) Query: 141 KSSGLNLCTGTGSKAWSFNINRVATQAVEDVLNIAKRQG---NLSLPLNRELVEKVTNEY 197 K L + T W N+V + + + KR+G L L K+T E Sbjct: 32 KGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGVKAGTKLSLMPWFHGKITREQ 91 Query: 198 NESLLYSPEEPKILFSIRE 216 E LLY PE LF +RE Sbjct: 92 AERLLYPPETG--LFLVRE 108 >gi|4758078 c-src tyrosine kinase [Homo sapiens] Length = 450 Score = 28.5 bits (62), Expect = 6.8 Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 5/79 (6%) Query: 141 KSSGLNLCTGTGSKAWSFNINRVATQAVEDVLNIAKRQG---NLSLPLNRELVEKVTNEY 197 K L + T W N+V + + + KR+G L L K+T E Sbjct: 32 KGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGVKAGTKLSLMPWFHGKITREQ 91 Query: 198 NESLLYSPEEPKILFSIRE 216 E LLY PE LF +RE Sbjct: 92 AERLLYPPETG--LFLVRE 108 >gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens] Length = 1960 Score = 28.1 bits (61), Expect = 8.9 Identities = 17/58 (29%), Positives = 31/58 (53%) Query: 75 LHEQQLSLNQHNRALNIERAHDERSEASGPQLLPVRALNEVFIGESLSSRASYYEISV 132 L + L ++Q N LN+ER+H +++E + QL +V + E + S Y+ S+ Sbjct: 1752 LKKANLQIDQINTDLNLERSHAQKNENARQQLERQNKELKVKLQEMEGTVKSKYKASI 1809 >gi|239756943 PREDICTED: hypothetical protein [Homo sapiens] Length = 783 Score = 28.1 bits (61), Expect = 8.9 Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 5/58 (8%) Query: 84 QHNRALNIERAHDERSEASGPQLLPVRALNEVFIGESLSSRASYYEISVDDGPWEKQK 141 +H R N +H + +A P RA+ +V + + A+ +++++ GPWE+++ Sbjct: 415 EHKRGDNARPSHGLQDDAPRP-----RAVTQVVVQGVEALAAAGWDMALGPGPWEQEE 467 >gi|239751443 PREDICTED: hypothetical protein [Homo sapiens] Length = 783 Score = 28.1 bits (61), Expect = 8.9 Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 5/58 (8%) Query: 84 QHNRALNIERAHDERSEASGPQLLPVRALNEVFIGESLSSRASYYEISVDDGPWEKQK 141 +H R N +H + +A P RA+ +V + + A+ +++++ GPWE+++ Sbjct: 415 EHKRGDNARPSHGLQDDAPRP-----RAVTQVVVQGVEALAAAGWDMALGPGPWEQEE 467 >gi|239745948 PREDICTED: hypothetical protein XP_002343622 [Homo sapiens] Length = 791 Score = 28.1 bits (61), Expect = 8.9 Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 5/58 (8%) Query: 84 QHNRALNIERAHDERSEASGPQLLPVRALNEVFIGESLSSRASYYEISVDDGPWEKQK 141 +H R N +H + +A P RA+ +V + + A+ +++++ GPWE+++ Sbjct: 423 EHKRGDNARPSHGLQDDAPRP-----RAVTQVVVQGVEALAAAGWDMALGPGPWEQEE 475 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.318 0.133 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,340,690 Number of Sequences: 37866 Number of extensions: 445700 Number of successful extensions: 1035 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 1030 Number of HSP's gapped (non-prelim): 11 length of query: 279 length of database: 18,247,518 effective HSP length: 101 effective length of query: 178 effective length of database: 14,423,052 effective search space: 2567303256 effective search space used: 2567303256 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.