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Search of human proteins with 23097310
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23097310 elongation of very long chain fatty acids like 3
[Homo sapiens]
(270 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23097310 elongation of very long chain fatty acids like 3 [Ho... 561 e-160
gi|195539343 elongation of very long chain fatty acids-like 6 [H... 250 8e-67
gi|13129088 elongation of very long chain fatty acids-like 6 [Ho... 250 8e-67
gi|13489093 elongation of very long chain fatty acids-like 1 [Ho... 84 1e-16
gi|12232379 elongation of very long chain fatty acids-like 4 [Ho... 84 2e-16
gi|11464975 elongation of very long chain fatty acids-like 5 [Ho... 83 3e-16
gi|157388949 elongation of very long chain fatty acids-like 7 [H... 81 1e-15
gi|157388947 elongation of very long chain fatty acids-like 7 [H... 81 1e-15
gi|157388945 elongation of very long chain fatty acids-like 2 [H... 73 2e-13
gi|115583667 sodium channel, voltage-gated, type XI, alpha [Homo... 28 8.4
>gi|23097310 elongation of very long chain fatty acids like 3 [Homo
sapiens]
Length = 270
Score = 561 bits (1446), Expect = e-160
Identities = 270/270 (100%), Positives = 270/270 (100%)
Query: 1 MVTAMNVSHEVNQLFQPYNFELSKDMRPFFEEYWATSFPIALIYLVLIAVGQNYMKERKG 60
MVTAMNVSHEVNQLFQPYNFELSKDMRPFFEEYWATSFPIALIYLVLIAVGQNYMKERKG
Sbjct: 1 MVTAMNVSHEVNQLFQPYNFELSKDMRPFFEEYWATSFPIALIYLVLIAVGQNYMKERKG 60
Query: 61 FNLQGPLILWSFCLAIFSILGAVRMWGIMGTVLLTGGLKQTVCFINFIDNSTVKFWSWVF 120
FNLQGPLILWSFCLAIFSILGAVRMWGIMGTVLLTGGLKQTVCFINFIDNSTVKFWSWVF
Sbjct: 61 FNLQGPLILWSFCLAIFSILGAVRMWGIMGTVLLTGGLKQTVCFINFIDNSTVKFWSWVF 120
Query: 121 LLSKVIELGDTAFIILRKRPLIFIHWYHHSTVLVYTSFGYKNKVPAGGWFVTMNFGVHAI 180
LLSKVIELGDTAFIILRKRPLIFIHWYHHSTVLVYTSFGYKNKVPAGGWFVTMNFGVHAI
Sbjct: 121 LLSKVIELGDTAFIILRKRPLIFIHWYHHSTVLVYTSFGYKNKVPAGGWFVTMNFGVHAI 180
Query: 181 MYTYYTLKAANVKPPKMLPMLITSLQILQMFVGAIVSILTYIWRQDQGCHTTMEHLFWSF 240
MYTYYTLKAANVKPPKMLPMLITSLQILQMFVGAIVSILTYIWRQDQGCHTTMEHLFWSF
Sbjct: 181 MYTYYTLKAANVKPPKMLPMLITSLQILQMFVGAIVSILTYIWRQDQGCHTTMEHLFWSF 240
Query: 241 ILYMTYFILFAHFFCQTYIRPKVKAKTKSQ 270
ILYMTYFILFAHFFCQTYIRPKVKAKTKSQ
Sbjct: 241 ILYMTYFILFAHFFCQTYIRPKVKAKTKSQ 270
>gi|195539343 elongation of very long chain fatty acids-like 6 [Homo
sapiens]
Length = 265
Score = 250 bits (639), Expect = 8e-67
Identities = 118/258 (45%), Positives = 168/258 (65%), Gaps = 4/258 (1%)
Query: 16 QPYNFELS---KDMRPFFEEYWATSFPIALIYLVLIAVGQNYMKERKGFNLQGPLILWSF 72
Q Y FE + + +E W SF + +Y I G++ M +R F L+ PL+LWS
Sbjct: 9 QEYEFEKQFNENEAIQWMQENWKKSFLFSALYAAFIFGGRHLMNKRAKFELRKPLVLWSL 68
Query: 73 CLAIFSILGAVRMWGIMGTVLLTGGLKQTVCFINFIDNSTVKFWSWVFLLSKVIELGDTA 132
LA+FSI GA+R M +L+T GLKQ+VC F + KFW++ F+LSK ELGDT
Sbjct: 69 TLAVFSIFGALRTGAYMVYILMTKGLKQSVCDQGFYNGPVSKFWAYAFVLSKAPELGDTI 128
Query: 133 FIILRKRPLIFIHWYHHSTVLVYTSFGYKNKVPAGGWFVTMNFGVHAIMYTYYTLKAANV 192
FIILRK+ LIF+HWYHH TVL+Y+ + YK+ V GGWF+TMN+GVHA+MY+YY L+AA
Sbjct: 129 FIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVHAVMYSYYALRAAGF 188
Query: 193 KPPKMLPMLITSLQILQMFVGAIVSILTYIWRQDQGCHTTMEHLFWSFILYMTYFILFAH 252
+ + M IT QI QM +G +V+ L + W Q CH+ +++FWS ++Y++Y +LF H
Sbjct: 189 RVSRKFAMFITLSQITQMLMGCVVNYLVFCWMQHDQCHSHFQNIFWSSLMYLSYLVLFCH 248
Query: 253 FFCQTYIRPKVKAKTKSQ 270
FF + YI K++ TK++
Sbjct: 249 FFFEAYI-GKMRKTTKAE 265
>gi|13129088 elongation of very long chain fatty acids-like 6 [Homo
sapiens]
Length = 265
Score = 250 bits (639), Expect = 8e-67
Identities = 118/258 (45%), Positives = 168/258 (65%), Gaps = 4/258 (1%)
Query: 16 QPYNFELS---KDMRPFFEEYWATSFPIALIYLVLIAVGQNYMKERKGFNLQGPLILWSF 72
Q Y FE + + +E W SF + +Y I G++ M +R F L+ PL+LWS
Sbjct: 9 QEYEFEKQFNENEAIQWMQENWKKSFLFSALYAAFIFGGRHLMNKRAKFELRKPLVLWSL 68
Query: 73 CLAIFSILGAVRMWGIMGTVLLTGGLKQTVCFINFIDNSTVKFWSWVFLLSKVIELGDTA 132
LA+FSI GA+R M +L+T GLKQ+VC F + KFW++ F+LSK ELGDT
Sbjct: 69 TLAVFSIFGALRTGAYMVYILMTKGLKQSVCDQGFYNGPVSKFWAYAFVLSKAPELGDTI 128
Query: 133 FIILRKRPLIFIHWYHHSTVLVYTSFGYKNKVPAGGWFVTMNFGVHAIMYTYYTLKAANV 192
FIILRK+ LIF+HWYHH TVL+Y+ + YK+ V GGWF+TMN+GVHA+MY+YY L+AA
Sbjct: 129 FIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVHAVMYSYYALRAAGF 188
Query: 193 KPPKMLPMLITSLQILQMFVGAIVSILTYIWRQDQGCHTTMEHLFWSFILYMTYFILFAH 252
+ + M IT QI QM +G +V+ L + W Q CH+ +++FWS ++Y++Y +LF H
Sbjct: 189 RVSRKFAMFITLSQITQMLMGCVVNYLVFCWMQHDQCHSHFQNIFWSSLMYLSYLVLFCH 248
Query: 253 FFCQTYIRPKVKAKTKSQ 270
FF + YI K++ TK++
Sbjct: 249 FFFEAYI-GKMRKTTKAE 265
>gi|13489093 elongation of very long chain fatty acids-like 1 [Homo
sapiens]
Length = 279
Score = 84.0 bits (206), Expect = 1e-16
Identities = 71/241 (29%), Positives = 119/241 (49%), Gaps = 27/241 (11%)
Query: 36 TSFPIALIYLVLIAVGQNYMKERKGFNLQGPLILWSFCLAIFSILGAVRMWGIMGTVLLT 95
TS + +Y VL ++G M RK F L+G +I+++F L S+ I+ L++
Sbjct: 32 TSILLTYVYFVL-SLGPRIMANRKPFQLRGFMIVYNFSLVALSLY-------IVYEFLMS 83
Query: 96 GGLKQTVCFINFIDNST------VKFWSWVFLLSKVIELGDTAFIILRKR--PLIFIHWY 147
G L + +D S + +W+FL SK IEL DT ILRK+ + F+H +
Sbjct: 84 GWLSTYTWRCDPVDYSNSPEALRMVRVAWLFLFSKFIELMDTVIFILRKKDGQVTFLHVF 143
Query: 148 HHSTVLVYTSFGYKNKVPAGG---WFVTMNFGVHAIMYTYYTLKAAN--VKPPKMLPMLI 202
HHS ++ S+ + K+ GG + +N VH IMY YY L A +P +
Sbjct: 144 HHS--VLPWSWWWGVKIAPGGMGSFHAMINSSVHVIMYLYYGLSAFGPVAQPYLWWKKHM 201
Query: 203 TSLQILQMFVGAIVSILTYIWRQDQGCHTTMEHLFWSFILYMT-YFILFAHFFCQTYIRP 261
T++Q++Q + ++ Y + + HL W +Y T +F+LF++F+ +Y +
Sbjct: 202 TAIQLIQFVLVSLHISQYYFMSSCNYQYPVIIHLIW---MYGTIFFMLFSNFWYHSYTKG 258
Query: 262 K 262
K
Sbjct: 259 K 259
>gi|12232379 elongation of very long chain fatty acids-like 4 [Homo
sapiens]
Length = 314
Score = 83.6 bits (205), Expect = 2e-16
Identities = 69/242 (28%), Positives = 117/242 (48%), Gaps = 15/242 (6%)
Query: 28 PFFEEYWATSFPIALIYLVLIAVGQNYMKERKGFNLQGPLILWSFCLAIFSILGAVRMWG 87
P + W T I+ +YL+ + +G +MK+R+ F ++ LI+++F + + ++ ++
Sbjct: 41 PLMQSPWPT-LSISTLYLLFVWLGPKWMKDREPFQMRLVLIIYNFGMVLLNLFIFRELF- 98
Query: 88 IMGTVLL-TGGLKQTVCFINFIDNSTVKFWSWVFLLSKVIELGDTAFIILRKR--PLIFI 144
MG+ + Q+V + N + + W + +SK +E DT F ILRK+ + F+
Sbjct: 99 -MGSYNAGYSYICQSVDYSNNVHEVRIAAALWWYFVSKGVEYLDTVFFILRKKNNQVSFL 157
Query: 145 HWYHHSTVLVYTSFGYKNKVPAGGWF-VTMNFGVHAIMYTYYTLKAANVKPPKML--PML 201
H YHH T+ G K +F +N +H IMY+YY L A K L
Sbjct: 158 HVYHHCTMFTLWWIGIKWVAGGQAFFGAQLNSFIHVIMYSYYGLTAFGPWIQKYLWWKRY 217
Query: 202 ITSLQILQMFVGAIVSILTYIWRQDQGCHTTMEHLFWSFILYMTYFI-LFAHFFCQTYIR 260
+T LQ++Q V + L+ C + + W+ I Y FI LF +F+ +TY
Sbjct: 218 LTMLQLIQFHVTIGHTALSLY----TDC-PFPKWMHWALIAYAISFIFLFLNFYIRTYKE 272
Query: 261 PK 262
PK
Sbjct: 273 PK 274
>gi|11464975 elongation of very long chain fatty acids-like 5 [Homo
sapiens]
Length = 299
Score = 82.8 bits (203), Expect = 3e-16
Identities = 70/245 (28%), Positives = 116/245 (47%), Gaps = 32/245 (13%)
Query: 29 FFEEYWATSFPIALIYLVLIAVGQNYMKERKGFNLQGPLILWSFCLAIFSILGAVRMWGI 88
F + + +F ++IYL+++ +G YM+ ++ F+ +G L++++ L + S+
Sbjct: 27 FLLDNYIPTFICSVIYLLIVWLGPKYMRNKQPFSCRGILVVYNLGLTLLSL--------Y 78
Query: 89 MGTVLLTGGLKQTVCFI----NFIDNSTVKFWS--WVFLLSKVIELGDTAFIILRK--RP 140
M L+TG + F S +K W + SK+IE DT F ILRK
Sbjct: 79 MFCELVTGVWEGKYNFFCQGTRTAGESDMKIIRVLWWYYFSKLIEFMDTFFFILRKNNHQ 138
Query: 141 LIFIHWYHHSTVLVYTSFGYKNKVPAGGWF--VTMNFGVHAIMYTYYTLKAANVKPPKML 198
+ +H YHH+++L F N VP G + T+N +H +MY+YY L + P M
Sbjct: 139 ITVLHVYHHASMLNIWWF-VMNWVPCGHSYFGATLNSFIHVLMYSYYGLSSV----PSMR 193
Query: 199 PML-----ITSLQILQMFVGAIVSILTYIWRQDQGCHTTMEHLFWSFILYMTYFILFAHF 253
P L IT Q+LQ + I + IW C + L++ ++ LF +F
Sbjct: 194 PYLWWKKYITQGQLLQFVLTIIQTSCGVIW----PCTFPLGWLYFQIGYMISLIALFTNF 249
Query: 254 FCQTY 258
+ QTY
Sbjct: 250 YIQTY 254
>gi|157388949 elongation of very long chain fatty acids-like 7 [Homo
sapiens]
Length = 281
Score = 80.9 bits (198), Expect = 1e-15
Identities = 73/265 (27%), Positives = 123/265 (46%), Gaps = 34/265 (12%)
Query: 24 KDMRPFFEEYWATSFPIALIYLV------LIAVGQNYMKERKGFNLQGPLILWSFCLAIF 77
KD P E++ S P+ L+ + ++G M+ RK F L+ +I ++F + +F
Sbjct: 19 KDADPRVEDWLLMSSPLPQTILLGFYVYFVTSLGPKLMENRKPFELKKAMITYNFFIVLF 78
Query: 78 SILGAVRM----WGIMGTVLLTGGLKQTVCFINFIDNSTVKFWS---WVFLLSKVIELGD 130
S+ WGI G +++ + T + W++ SK IEL D
Sbjct: 79 SVYMCYEFVMSGWGI--------GYSFRCDIVDYSRSPTALRMARTCWLYYFSKFIELLD 130
Query: 131 TAFIILRKR--PLIFIHWYHHSTVLVYTSFGYKNKVPAGG---WFVTMNFGVHAIMYTYY 185
T F +LRK+ + F+H +HH T++ +T + + K AGG + +N VH +MY+YY
Sbjct: 131 TIFFVLRKKNSQVTFLHVFHH-TIMPWT-WWFGVKFAAGGLGTFHALLNTAVHVVMYSYY 188
Query: 186 TLKAANVKPPKML--PMLITSLQILQMFVGAIVSILTYIWRQDQGCHTTMEHLFWSFILY 243
L A K L +TSLQ++Q FV + I + + +D C + Y
Sbjct: 189 GLSALGPAYQKYLWWKKYLTSLQLVQ-FVIVAIHISQFFFMED--CKYQFPVFACIIMSY 245
Query: 244 -MTYFILFAHFFCQTYIRPKVKAKT 267
+ +LF HF+ + Y + + KT
Sbjct: 246 SFMFLLLFLHFWYRAYTKGQRLPKT 270
>gi|157388947 elongation of very long chain fatty acids-like 7 [Homo
sapiens]
Length = 281
Score = 80.9 bits (198), Expect = 1e-15
Identities = 73/265 (27%), Positives = 123/265 (46%), Gaps = 34/265 (12%)
Query: 24 KDMRPFFEEYWATSFPIALIYLV------LIAVGQNYMKERKGFNLQGPLILWSFCLAIF 77
KD P E++ S P+ L+ + ++G M+ RK F L+ +I ++F + +F
Sbjct: 19 KDADPRVEDWLLMSSPLPQTILLGFYVYFVTSLGPKLMENRKPFELKKAMITYNFFIVLF 78
Query: 78 SILGAVRM----WGIMGTVLLTGGLKQTVCFINFIDNSTVKFWS---WVFLLSKVIELGD 130
S+ WGI G +++ + T + W++ SK IEL D
Sbjct: 79 SVYMCYEFVMSGWGI--------GYSFRCDIVDYSRSPTALRMARTCWLYYFSKFIELLD 130
Query: 131 TAFIILRKR--PLIFIHWYHHSTVLVYTSFGYKNKVPAGG---WFVTMNFGVHAIMYTYY 185
T F +LRK+ + F+H +HH T++ +T + + K AGG + +N VH +MY+YY
Sbjct: 131 TIFFVLRKKNSQVTFLHVFHH-TIMPWT-WWFGVKFAAGGLGTFHALLNTAVHVVMYSYY 188
Query: 186 TLKAANVKPPKML--PMLITSLQILQMFVGAIVSILTYIWRQDQGCHTTMEHLFWSFILY 243
L A K L +TSLQ++Q FV + I + + +D C + Y
Sbjct: 189 GLSALGPAYQKYLWWKKYLTSLQLVQ-FVIVAIHISQFFFMED--CKYQFPVFACIIMSY 245
Query: 244 -MTYFILFAHFFCQTYIRPKVKAKT 267
+ +LF HF+ + Y + + KT
Sbjct: 246 SFMFLLLFLHFWYRAYTKGQRLPKT 270
>gi|157388945 elongation of very long chain fatty acids-like 2 [Homo
sapiens]
Length = 296
Score = 73.2 bits (178), Expect = 2e-13
Identities = 66/247 (26%), Positives = 114/247 (46%), Gaps = 24/247 (9%)
Query: 29 FFEEYWATSFPIALIYLVLIAVGQNYMKERKGFNLQGPLILWSFCLAIFSILGAVRMWGI 88
F + + +F + ++YL+ I +G YMK R +L+G L L++ + + S + I
Sbjct: 30 FMLDSYLPTFFLTVMYLLSIWLGNKYMKNRPALSLRGILTLYNLGITLLSAYMLAEL--I 87
Query: 89 MGTVLLTGGLKQTVCFINFIDNSTVKFWS--WVFLLSKVIELGDTAFIILRKR--PLIFI 144
+ T GG + + ++ W + SK +E DT F +LRK+ + F+
Sbjct: 88 LST--WEGGYNLQCQDLTSAGEADIRVAKVLWWYYFSKSVEFLDTIFFVLRKKTSQITFL 145
Query: 145 HWYHHSTVLVYTSFGYKNKVPAGGWFV--TMNFGVHAIMYTYYTLKAANVKPPKMLPML- 201
H YHH++ + + N +P G F T+N +H +MY+YY L P M L
Sbjct: 146 HVYHHAS-MFNIWWCVLNWIPCGQSFFGPTLNSFIHILMYSYYGLSVF----PSMHKYLW 200
Query: 202 ----ITSLQILQMFVGAIVSILTYIWRQDQGCHTTMEHLFWSFILYMTYFILFAHFFCQT 257
+T Q++Q FV I ++ + + C L + +T ILF +F+ QT
Sbjct: 201 WKKYLTQAQLVQ-FVLTITHTMSAVVKP---CGFPFGCLIFQSSYMLTLVILFLNFYVQT 256
Query: 258 YIRPKVK 264
Y + +K
Sbjct: 257 YRKKPMK 263
>gi|115583667 sodium channel, voltage-gated, type XI, alpha [Homo
sapiens]
Length = 1791
Score = 28.1 bits (61), Expect = 8.4
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 196 KMLPMLITSLQILQMFVGAIVSILTYIWRQDQGCHTTMEHLFWSFILYMTYFILFAHFFC 255
++ ++I SL IL M +S++ + Q + + ++HL W F++ T L F
Sbjct: 1366 QIFDIIIISLIILNM-----ISMMAESYNQPKAMKSILDHLNWVFVVIFTLECLIKIFAL 1420
Query: 256 QTY 258
+ Y
Sbjct: 1421 RQY 1423
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.331 0.142 0.466
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,223,104
Number of Sequences: 37866
Number of extensions: 357369
Number of successful extensions: 837
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 814
Number of HSP's gapped (non-prelim): 11
length of query: 270
length of database: 18,247,518
effective HSP length: 101
effective length of query: 169
effective length of database: 14,423,052
effective search space: 2437495788
effective search space used: 2437495788
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.