Search of human proteins with 22748823

Search of human proteins with 22748823

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|22748823 Bardet-Biedl syndrome 5 [Homo sapiens]
         (341 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|22748823 Bardet-Biedl syndrome 5 [Homo sapiens]                    680   0.0  
gi|89274169 cytokine induced apoptosis inhibitor 1 [Homo sapiens]      30   3.1  
gi|225543463 tetratricopeptide repeat, ankyrin repeat and coiled...    29   6.9  
gi|171906606 zinc finger with KRAB and SCAN domains 2 [Homo sapi...    29   6.9  
gi|225543461 tetratricopeptide repeat, ankyrin repeat and coiled...    28   9.1  

>gi|22748823 Bardet-Biedl syndrome 5 [Homo sapiens]
          Length = 341

 Score =  680 bits (1754), Expect = 0.0
 Identities = 341/341 (100%), Positives = 341/341 (100%)

Query: 1   MSVLDALWEDRDVRFDLSAQQMKTRPGEVLIDCLDSIEDTKGNNGDRGRLLVTNLRILWH 60
           MSVLDALWEDRDVRFDLSAQQMKTRPGEVLIDCLDSIEDTKGNNGDRGRLLVTNLRILWH
Sbjct: 1   MSVLDALWEDRDVRFDLSAQQMKTRPGEVLIDCLDSIEDTKGNNGDRGRLLVTNLRILWH 60

Query: 61  SLALSRVNVSVGYNCILNITTRTANSKLRGQTEALYILTKCNSTRFEFIFTNLVPGSPRL 120
           SLALSRVNVSVGYNCILNITTRTANSKLRGQTEALYILTKCNSTRFEFIFTNLVPGSPRL
Sbjct: 61  SLALSRVNVSVGYNCILNITTRTANSKLRGQTEALYILTKCNSTRFEFIFTNLVPGSPRL 120

Query: 121 FTSVMAVHRAYETSKMYRDFKLRSALIQNKQLRLLPQEHVYDKINGVWNLSSDQGNLGTF 180
           FTSVMAVHRAYETSKMYRDFKLRSALIQNKQLRLLPQEHVYDKINGVWNLSSDQGNLGTF
Sbjct: 121 FTSVMAVHRAYETSKMYRDFKLRSALIQNKQLRLLPQEHVYDKINGVWNLSSDQGNLGTF 180

Query: 181 FITNVRIVWHANMNDSFNVSIPYLQIRSIKIRDSKFGLALVIESSQQSGGYVLGFKIDPV 240
           FITNVRIVWHANMNDSFNVSIPYLQIRSIKIRDSKFGLALVIESSQQSGGYVLGFKIDPV
Sbjct: 181 FITNVRIVWHANMNDSFNVSIPYLQIRSIKIRDSKFGLALVIESSQQSGGYVLGFKIDPV 240

Query: 241 EKLQESVKEINSLHKVYSASPIFGVDYEMEEKPQPLEALTVEQIQDDVEIDSDGHTDAFV 300
           EKLQESVKEINSLHKVYSASPIFGVDYEMEEKPQPLEALTVEQIQDDVEIDSDGHTDAFV
Sbjct: 241 EKLQESVKEINSLHKVYSASPIFGVDYEMEEKPQPLEALTVEQIQDDVEIDSDGHTDAFV 300

Query: 301 AYFADGNKQQDREPVFSEELGLAIEKLKDGFTLQGLWEVMS 341
           AYFADGNKQQDREPVFSEELGLAIEKLKDGFTLQGLWEVMS
Sbjct: 301 AYFADGNKQQDREPVFSEELGLAIEKLKDGFTLQGLWEVMS 341


>gi|89274169 cytokine induced apoptosis inhibitor 1 [Homo sapiens]
          Length = 312

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 10/153 (6%)

Query: 175 GNLGTFFITNVR-IVWHANMNDSFNVSIPYLQIRSIKIRDSKFGLALVIESSQQSGGYVL 233
           GN G   + N++ ++  A+   SF++ +  L   S  +  ++  +   I    + GG + 
Sbjct: 37  GNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTLHSAE--ILAEIARILRPGGCL- 93

Query: 234 GFKIDPVEKLQESVKEINSLHKVYSASPIFGVDYEMEEKPQPLEALTVEQIQDDVEIDSD 293
            F  +PVE   ++  ++ +  K+ SA  + G+   +E K    E LT E++Q   E    
Sbjct: 94  -FLKEPVETAVDNNSKVKTASKLCSALTLSGL---VEVKELQREPLTPEEVQSVRE--HL 147

Query: 294 GHTDAFVAYFADGNKQQDREPVFSEELGLAIEK 326
           GH    + +     K+ + E   S +L L+I K
Sbjct: 148 GHESDNLLFVQITGKKPNFEVGSSRQLKLSITK 180


>gi|225543463 tetratricopeptide repeat, ankyrin repeat and
           coiled-coil containing 1 isoform 2 [Homo sapiens]
          Length = 1390

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 15/49 (30%), Positives = 24/49 (48%)

Query: 18  SAQQMKTRPGEVLIDCLDSIEDTKGNNGDRGRLLVTNLRILWHSLALSR 66
           S+  +  RP  V       +ED    +G R   L T++R+ WH+ A +R
Sbjct: 302 SSSLIMPRPNSVAATSSTKLEDLSYLDGQRNAPLRTSIRLPWHNTAGAR 350


>gi|171906606 zinc finger with KRAB and SCAN domains 2 [Homo
           sapiens]
          Length = 967

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 107 EFIFTNLVPGSPRLFTSVMAVHRAYETSKMYRD 139
           EFI  + + G+P LF ++  VH  YE +K + D
Sbjct: 478 EFIRKSEIHGAPVLFQNLSGVHWGYEETKTFLD 510


>gi|225543461 tetratricopeptide repeat, ankyrin repeat and
           coiled-coil containing 1 isoform 1 [Homo sapiens]
          Length = 1861

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 15/49 (30%), Positives = 23/49 (46%)

Query: 18  SAQQMKTRPGEVLIDCLDSIEDTKGNNGDRGRLLVTNLRILWHSLALSR 66
           S+  +  RP  V       +ED    +G R   L T++R+ WH+ A  R
Sbjct: 303 SSSLIMPRPNSVAATSSTKLEDLSYLDGQRNAPLRTSIRLPWHNTAGGR 351


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,612,141
Number of Sequences: 37866
Number of extensions: 460296
Number of successful extensions: 1061
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1055
Number of HSP's gapped (non-prelim): 5
length of query: 341
length of database: 18,247,518
effective HSP length: 103
effective length of query: 238
effective length of database: 14,347,320
effective search space: 3414662160
effective search space used: 3414662160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.