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Search of human proteins with 226505140
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|226505140 PQ loop repeat containing 1 isoform 3 [Homo
sapiens]
(253 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|226505140 PQ loop repeat containing 1 isoform 3 [Homo sapiens] 515 e-146
gi|31542733 PQ loop repeat containing 1 isoform 1 [Homo sapiens] 504 e-143
gi|226503974 PQ loop repeat containing 1 isoform 2 [Homo sapiens] 227 7e-60
gi|119943110 cystinosis, nephropathic isoform 2 [Homo sapiens] 34 0.11
gi|119943118 cystinosis, nephropathic isoform 1 [Homo sapiens] 34 0.11
gi|122937281 solute carrier family 38, member 8 [Homo sapiens] 28 5.9
gi|196123581 cytochrome c oxidase subunit I [Homo sapiens neande... 28 7.7
gi|251831109 cytochrome c oxidase subunit I [Homo sapiens] 28 7.7
gi|15208665 tripartite motif protein TRIM14 isoform alpha [Homo ... 28 7.7
gi|15208663 tripartite motif protein TRIM14 isoform alpha [Homo ... 28 7.7
gi|15208667 tripartite motif protein TRIM14 isoform alpha [Homo ... 28 7.7
>gi|226505140 PQ loop repeat containing 1 isoform 3 [Homo sapiens]
Length = 253
Score = 515 bits (1327), Expect = e-146
Identities = 253/253 (100%), Positives = 253/253 (100%)
Query: 1 MEAEGLDWLLVPLHQLVSWGAAAAMVFGGVVPYVPQYRDIRRTQNADGFSTYVCLVLLVA 60
MEAEGLDWLLVPLHQLVSWGAAAAMVFGGVVPYVPQYRDIRRTQNADGFSTYVCLVLLVA
Sbjct: 1 MEAEGLDWLLVPLHQLVSWGAAAAMVFGGVVPYVPQYRDIRRTQNADGFSTYVCLVLLVA 60
Query: 61 NILRILFWFGRRFESPLLWQSAIMILTMLLMLKLCTEVRVANELNARRRSFTDFDPHHFW 120
NILRILFWFGRRFESPLLWQSAIMILTMLLMLKLCTEVRVANELNARRRSFTDFDPHHFW
Sbjct: 61 NILRILFWFGRRFESPLLWQSAIMILTMLLMLKLCTEVRVANELNARRRSFTDFDPHHFW 120
Query: 121 QWSSFSDYVQCVLAFTGVAGYITYLSIDSALFVETLGFLAVLTEAMLGVPQLYRNHRHQS 180
QWSSFSDYVQCVLAFTGVAGYITYLSIDSALFVETLGFLAVLTEAMLGVPQLYRNHRHQS
Sbjct: 121 QWSSFSDYVQCVLAFTGVAGYITYLSIDSALFVETLGFLAVLTEAMLGVPQLYRNHRHQS 180
Query: 181 TEGMSIKMVLMWTSGDAFKTAYFLLKGAPLQFSVCGLLQVLVDLAILGQAYAFARHPQKP 240
TEGMSIKMVLMWTSGDAFKTAYFLLKGAPLQFSVCGLLQVLVDLAILGQAYAFARHPQKP
Sbjct: 181 TEGMSIKMVLMWTSGDAFKTAYFLLKGAPLQFSVCGLLQVLVDLAILGQAYAFARHPQKP 240
Query: 241 APHAVHPTGTKAL 253
APHAVHPTGTKAL
Sbjct: 241 APHAVHPTGTKAL 253
>gi|31542733 PQ loop repeat containing 1 isoform 1 [Homo sapiens]
Length = 271
Score = 504 bits (1298), Expect = e-143
Identities = 253/271 (93%), Positives = 253/271 (93%), Gaps = 18/271 (6%)
Query: 1 MEAEGLDWLLVPLHQLVSWGAAAAMVFGGVVPYVPQYRDIRRTQNADGFSTYVCLVLLVA 60
MEAEGLDWLLVPLHQLVSWGAAAAMVFGGVVPYVPQYRDIRRTQNADGFSTYVCLVLLVA
Sbjct: 1 MEAEGLDWLLVPLHQLVSWGAAAAMVFGGVVPYVPQYRDIRRTQNADGFSTYVCLVLLVA 60
Query: 61 NILRILFWFGRRFESPLLWQSAIMILTMLLMLKLCTEVRVANELNARRRSFT-------- 112
NILRILFWFGRRFESPLLWQSAIMILTMLLMLKLCTEVRVANELNARRRSFT
Sbjct: 61 NILRILFWFGRRFESPLLWQSAIMILTMLLMLKLCTEVRVANELNARRRSFTAADSKDEE 120
Query: 113 ----------DFDPHHFWQWSSFSDYVQCVLAFTGVAGYITYLSIDSALFVETLGFLAVL 162
DFDPHHFWQWSSFSDYVQCVLAFTGVAGYITYLSIDSALFVETLGFLAVL
Sbjct: 121 VKVAPRRSFLDFDPHHFWQWSSFSDYVQCVLAFTGVAGYITYLSIDSALFVETLGFLAVL 180
Query: 163 TEAMLGVPQLYRNHRHQSTEGMSIKMVLMWTSGDAFKTAYFLLKGAPLQFSVCGLLQVLV 222
TEAMLGVPQLYRNHRHQSTEGMSIKMVLMWTSGDAFKTAYFLLKGAPLQFSVCGLLQVLV
Sbjct: 181 TEAMLGVPQLYRNHRHQSTEGMSIKMVLMWTSGDAFKTAYFLLKGAPLQFSVCGLLQVLV 240
Query: 223 DLAILGQAYAFARHPQKPAPHAVHPTGTKAL 253
DLAILGQAYAFARHPQKPAPHAVHPTGTKAL
Sbjct: 241 DLAILGQAYAFARHPQKPAPHAVHPTGTKAL 271
>gi|226503974 PQ loop repeat containing 1 isoform 2 [Homo sapiens]
Length = 132
Score = 227 bits (579), Expect = 7e-60
Identities = 112/112 (100%), Positives = 112/112 (100%)
Query: 1 MEAEGLDWLLVPLHQLVSWGAAAAMVFGGVVPYVPQYRDIRRTQNADGFSTYVCLVLLVA 60
MEAEGLDWLLVPLHQLVSWGAAAAMVFGGVVPYVPQYRDIRRTQNADGFSTYVCLVLLVA
Sbjct: 1 MEAEGLDWLLVPLHQLVSWGAAAAMVFGGVVPYVPQYRDIRRTQNADGFSTYVCLVLLVA 60
Query: 61 NILRILFWFGRRFESPLLWQSAIMILTMLLMLKLCTEVRVANELNARRRSFT 112
NILRILFWFGRRFESPLLWQSAIMILTMLLMLKLCTEVRVANELNARRRSFT
Sbjct: 61 NILRILFWFGRRFESPLLWQSAIMILTMLLMLKLCTEVRVANELNARRRSFT 112
>gi|119943110 cystinosis, nephropathic isoform 2 [Homo sapiens]
Length = 367
Score = 34.3 bits (77), Expect = 0.11
Identities = 34/163 (20%), Positives = 69/163 (42%), Gaps = 28/163 (17%)
Query: 84 MILTMLLMLKLCTEVRVANELNARRRSFTDFDPHHFWQWSSFSDYVQCVLAFTGVAGYIT 143
++LT++++++ C R ++ F W ++ +V ++A GV ++
Sbjct: 213 VVLTLIIIVQCCLYERGGQRVSWPAIGFLVLA----WLFA----FVTMIVAAVGVTTWLQ 264
Query: 144 YLSIDSALFVETLGFLAVLTEAMLGVPQLYRNHRHQSTEGMSIKMVLMWTSGDAFKTAYF 203
+L S ++ + + PQ Y N ++STEG SI VL+ +G +F
Sbjct: 265 FLFCFS--------YIKLAVTLVKYFPQAYMNFYYKSTEGWSIGNVLLDFTGGSFSLLQM 316
Query: 204 LLK-----------GAPLQFSVCGLLQVLVDLAILGQAYAFAR 235
L+ G P +F + G+ ++ D+ Q + R
Sbjct: 317 FLQSYNNDQWTLIFGDPTKFGL-GVFSIVFDVVFFIQHFCLYR 358
>gi|119943118 cystinosis, nephropathic isoform 1 [Homo sapiens]
Length = 400
Score = 34.3 bits (77), Expect = 0.11
Identities = 34/163 (20%), Positives = 69/163 (42%), Gaps = 28/163 (17%)
Query: 84 MILTMLLMLKLCTEVRVANELNARRRSFTDFDPHHFWQWSSFSDYVQCVLAFTGVAGYIT 143
++LT++++++ C R ++ F W ++ +V ++A GV ++
Sbjct: 213 VVLTLIIIVQCCLYERGGQRVSWPAIGFLVLA----WLFA----FVTMIVAAVGVTTWLQ 264
Query: 144 YLSIDSALFVETLGFLAVLTEAMLGVPQLYRNHRHQSTEGMSIKMVLMWTSGDAFKTAYF 203
+L S ++ + + PQ Y N ++STEG SI VL+ +G +F
Sbjct: 265 FLFCFS--------YIKLAVTLVKYFPQAYMNFYYKSTEGWSIGNVLLDFTGGSFSLLQM 316
Query: 204 LLK-----------GAPLQFSVCGLLQVLVDLAILGQAYAFAR 235
L+ G P +F + G+ ++ D+ Q + R
Sbjct: 317 FLQSYNNDQWTLIFGDPTKFGL-GVFSIVFDVVFFIQHFCLYR 358
>gi|122937281 solute carrier family 38, member 8 [Homo sapiens]
Length = 435
Score = 28.5 bits (62), Expect = 5.9
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 75 SPLLWQSAIMILTMLLMLKLCTEVRVANELNARRRSFTDFDPHHFWQWSSFSDYVQCVLA 134
SP W S + + C E V+ + R+RS + W S + C L
Sbjct: 211 SPASWTSVFSVFPTICFGFQCHEAAVSIYCSMRKRSLS------HWALVSVLSLLACCLI 264
Query: 135 F--TGVAGYITY 144
+ TGV G++T+
Sbjct: 265 YSLTGVYGFLTF 276
>gi|196123581 cytochrome c oxidase subunit I [Homo sapiens
neanderthalensis]
Length = 513
Score = 28.1 bits (61), Expect = 7.7
Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 15/134 (11%)
Query: 72 RFESPLLWQSAIMILTMLLMLKLCTEVRVANELNARRRSFTDFDP----------HHFWQ 121
++++PL S ++ +LL+ + L R + T FDP H FW
Sbjct: 178 QYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWF 237
Query: 122 WSSFSDYVQCVLAFTGVAGYITYLSIDSALFVETLGFLAVLTEAM-LGVPQLYRNHRHQS 180
+ Y+ + F ++ +TY S E G++ ++ M +G H
Sbjct: 238 FGHPEVYILILPGFGMISHIVTYYSGKK----EPFGYMGMVWAMMSIGFLGFIVWAHHMF 293
Query: 181 TEGMSIKMVLMWTS 194
T GM + +TS
Sbjct: 294 TVGMDVDTRAYFTS 307
>gi|251831109 cytochrome c oxidase subunit I [Homo sapiens]
Length = 513
Score = 28.1 bits (61), Expect = 7.7
Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 15/134 (11%)
Query: 72 RFESPLLWQSAIMILTMLLMLKLCTEVRVANELNARRRSFTDFDP----------HHFWQ 121
++++PL S ++ +LL+ + L R + T FDP H FW
Sbjct: 178 QYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWF 237
Query: 122 WSSFSDYVQCVLAFTGVAGYITYLSIDSALFVETLGFLAVLTEAM-LGVPQLYRNHRHQS 180
+ Y+ + F ++ +TY S E G++ ++ M +G H
Sbjct: 238 FGHPEVYILILPGFGMISHIVTYYSGKK----EPFGYMGMVWAMMSIGFLGFIVWAHHMF 293
Query: 181 TEGMSIKMVLMWTS 194
T GM + +TS
Sbjct: 294 TVGMDVDTRAYFTS 307
>gi|15208665 tripartite motif protein TRIM14 isoform alpha [Homo
sapiens]
Length = 442
Score = 28.1 bits (61), Expect = 7.7
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 125 FSDYVQCVLAFTGVAGYITYLSIDSALFVETLGFLAVLTEAMLGVPQL 172
F DY VLAF V G +++L A F E L L E + +P+L
Sbjct: 394 FLDYEAGVLAFYDVTGGMSHLHTFRATFQEPLYPALRLWEGAISIPRL 441
>gi|15208663 tripartite motif protein TRIM14 isoform alpha [Homo
sapiens]
Length = 442
Score = 28.1 bits (61), Expect = 7.7
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 125 FSDYVQCVLAFTGVAGYITYLSIDSALFVETLGFLAVLTEAMLGVPQL 172
F DY VLAF V G +++L A F E L L E + +P+L
Sbjct: 394 FLDYEAGVLAFYDVTGGMSHLHTFRATFQEPLYPALRLWEGAISIPRL 441
>gi|15208667 tripartite motif protein TRIM14 isoform alpha [Homo
sapiens]
Length = 442
Score = 28.1 bits (61), Expect = 7.7
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 125 FSDYVQCVLAFTGVAGYITYLSIDSALFVETLGFLAVLTEAMLGVPQL 172
F DY VLAF V G +++L A F E L L E + +P+L
Sbjct: 394 FLDYEAGVLAFYDVTGGMSHLHTFRATFQEPLYPALRLWEGAISIPRL 441
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.328 0.139 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,022,934
Number of Sequences: 37866
Number of extensions: 350332
Number of successful extensions: 835
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 824
Number of HSP's gapped (non-prelim): 13
length of query: 253
length of database: 18,247,518
effective HSP length: 100
effective length of query: 153
effective length of database: 14,460,918
effective search space: 2212520454
effective search space used: 2212520454
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.