Search of human proteins with 226491502

Search of human proteins with 226491502

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|226491502 asparaginyl-tRNA synthetase 2, mitochondrial [Homo
sapiens]
         (477 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|226491502 asparaginyl-tRNA synthetase 2, mitochondrial [Homo ...   964   0.0  
gi|4758762 asparaginyl-tRNA synthetase [Homo sapiens]                 181   1e-45
gi|45439306 aspartyl-tRNA synthetase [Homo sapiens]                   121   1e-27
gi|194272210 lysyl-tRNA synthetase isoform 1 [Homo sapiens]            46   8e-05
gi|5031815 lysyl-tRNA synthetase isoform 2 [Homo sapiens]              46   8e-05
gi|40789249 aspartyl-tRNA synthetase 2, mitochondrial [Homo sapi...    42   0.002
gi|16753207 ubiquilin 2 [Homo sapiens]                                 37   0.039
gi|22538426 TRAF3 interacting protein 2 isoform 1 [Homo sapiens]       32   1.3  
gi|22538428 TRAF3 interacting protein 2 isoform 2 [Homo sapiens]       32   1.3  
gi|239735605 leucine rich repeat containing 36 isoform 1 [Homo s...    30   4.8  
gi|239735598 leucine rich repeat containing 36 isoform 2 [Homo s...    30   4.8  
gi|194248081 tripartite motif-containing 2 isoform 2 [Homo sapiens]    30   4.8  
gi|194248079 tripartite motif-containing 2 isoform 1 [Homo sapiens]    30   4.8  
gi|84662750 hypothetical protein LOC284083 [Homo sapiens]              29   8.2  

>gi|226491502 asparaginyl-tRNA synthetase 2, mitochondrial [Homo
           sapiens]
          Length = 477

 Score =  964 bits (2493), Expect = 0.0
 Identities = 477/477 (100%), Positives = 477/477 (100%)

Query: 1   MLGVRCLLRSVRFCSSAPFPKHKPSAKLSVRDALGAQNASGERIKIQGWIRSVRSQKEVL 60
           MLGVRCLLRSVRFCSSAPFPKHKPSAKLSVRDALGAQNASGERIKIQGWIRSVRSQKEVL
Sbjct: 1   MLGVRCLLRSVRFCSSAPFPKHKPSAKLSVRDALGAQNASGERIKIQGWIRSVRSQKEVL 60

Query: 61  FLHVNDGSSLESLQVVADSGLDSRELNFGSSVEVQGQLIKSPSKRQNVELKAEKIKVIGN 120
           FLHVNDGSSLESLQVVADSGLDSRELNFGSSVEVQGQLIKSPSKRQNVELKAEKIKVIGN
Sbjct: 61  FLHVNDGSSLESLQVVADSGLDSRELNFGSSVEVQGQLIKSPSKRQNVELKAEKIKVIGN 120

Query: 121 CDAKDFPIKYKERHPLEYLRQYPHFRCRTNVLGSILRIRSEATAAIHSFFKDSGFVHIHT 180
           CDAKDFPIKYKERHPLEYLRQYPHFRCRTNVLGSILRIRSEATAAIHSFFKDSGFVHIHT
Sbjct: 121 CDAKDFPIKYKERHPLEYLRQYPHFRCRTNVLGSILRIRSEATAAIHSFFKDSGFVHIHT 180

Query: 181 PIITSNDSEGAGELFQLEPSGKLKVPEENFFNVPAFLTVSGQLHLEVMSGAFTQVFTFGP 240
           PIITSNDSEGAGELFQLEPSGKLKVPEENFFNVPAFLTVSGQLHLEVMSGAFTQVFTFGP
Sbjct: 181 PIITSNDSEGAGELFQLEPSGKLKVPEENFFNVPAFLTVSGQLHLEVMSGAFTQVFTFGP 240

Query: 241 TFRAENSQSRRHLAEFYMIEAEISFVDSLQDLMQVIEELFKATTMMVLSKCPEDVELCHK 300
           TFRAENSQSRRHLAEFYMIEAEISFVDSLQDLMQVIEELFKATTMMVLSKCPEDVELCHK
Sbjct: 241 TFRAENSQSRRHLAEFYMIEAEISFVDSLQDLMQVIEELFKATTMMVLSKCPEDVELCHK 300

Query: 301 FIAPGQKDRLEHMLKNNFLIISYTEAVEILKQASQNFTFTPEWGADLRTEHEKYLVKHCG 360
           FIAPGQKDRLEHMLKNNFLIISYTEAVEILKQASQNFTFTPEWGADLRTEHEKYLVKHCG
Sbjct: 301 FIAPGQKDRLEHMLKNNFLIISYTEAVEILKQASQNFTFTPEWGADLRTEHEKYLVKHCG 360

Query: 361 NIPVFVINYPLTLKPFYMRDNEDGPQHTVAAVDLLVPGVGELFGGGLREERYHFLEERLA 420
           NIPVFVINYPLTLKPFYMRDNEDGPQHTVAAVDLLVPGVGELFGGGLREERYHFLEERLA
Sbjct: 361 NIPVFVINYPLTLKPFYMRDNEDGPQHTVAAVDLLVPGVGELFGGGLREERYHFLEERLA 420

Query: 421 RSGLTEVYQWYLDLRRFGSVPHGGFGMGFERYLQCILGVDNIKDVIPFPRFPHSCLL 477
           RSGLTEVYQWYLDLRRFGSVPHGGFGMGFERYLQCILGVDNIKDVIPFPRFPHSCLL
Sbjct: 421 RSGLTEVYQWYLDLRRFGSVPHGGFGMGFERYLQCILGVDNIKDVIPFPRFPHSCLL 477


>gi|4758762 asparaginyl-tRNA synthetase [Homo sapiens]
          Length = 548

 Score =  181 bits (459), Expect = 1e-45
 Identities = 140/449 (31%), Positives = 216/449 (48%), Gaps = 41/449 (9%)

Query: 41  GERIKIQGWIRSVRSQ-KEVLFLHVNDGSSLESLQVVADSGL----DSRELNFGSSVEVQ 95
           G+R+K+ GW+  +R Q K ++FL + DG+    LQ V    L    +   L+  SSV V 
Sbjct: 125 GQRVKVFGWVHRLRRQGKNLMFLVLRDGTGY--LQCVLADELCQCYNGVLLSTESSVAVY 182

Query: 96  GQLIKSPSKRQ---NVELKAEKIKVIGNCDAKDFPIKYKERHPLEYLRQYPHFRCRTNVL 152
           G L  +P  +Q     EL  +  ++IG   A        E   ++      H   R   +
Sbjct: 183 GMLNLTPKGKQAPGGHELSCDFWELIGLAPAGGADNLINEESDVDVQLNNRHMMIRGENM 242

Query: 153 GSILRIRSEATAAIHSFFKDSGFVHIHTPIITSNDSEGAGELFQLEPSGKLKVPEENFFN 212
             IL+ RS  T      F D G+  +  P +     EG   LF+L+           +F 
Sbjct: 243 SKILKARSMVTRCFRDHFFDRGYYEVTPPTLVQTQVEGGATLFKLD-----------YFG 291

Query: 213 VPAFLTVSGQLHLEVMSGAFTQVFTFGPTFRAENSQSRRHLAEFYMIEAEISFVDSLQDL 272
             AFLT S QL+LE    A   VF    ++RAE S++RRHLAE+  +EAE  F+ +  DL
Sbjct: 292 EEAFLTQSSQLYLETCLPALGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPFL-TFDDL 350

Query: 273 MQVIEELFKATTMMVLSKCPEDV--ELCHKFIAPGQKDRLEHMLKNNFLIISYTEAVEIL 330
           +  +E+L       +L      +  EL   F  P          K  F  ++Y++A+  L
Sbjct: 351 LNRLEDLVCDVVDRILKSPAGSIVHELNPNFQPP----------KRPFKRMNYSDAIVWL 400

Query: 331 KQ---ASQNFTFTPEWGADLRTEHEKYLVKHCGNIPVFVINYPLTLKPFYMRDNEDGPQH 387
           K+     ++ TF  E+G D+    E+ L+    N P+ +  +P+ +K FYM+   +  + 
Sbjct: 401 KEHDVKKEDGTFY-EFGEDIPEAPER-LMTDTINEPILLCRFPVEIKSFYMQRCPEDSRL 458

Query: 388 TVAAVDLLVPGVGELFGGGLREERYHFLEERLARSGLTEV-YQWYLDLRRFGSVPHGGFG 446
           T  +VD+L+P VGE+ GG +R      +     R G+    Y WY D R++G+ PHGG+G
Sbjct: 459 T-ESVDVLMPNVGEIVGGSMRIFDSEEILAGYKREGIDPTPYYWYTDQRKYGTCPHGGYG 517

Query: 447 MGFERYLQCILGVDNIKDVIPFPRFPHSC 475
           +G ER+L  IL   +I+DV  +PRF   C
Sbjct: 518 LGLERFLTWILNRYHIRDVCLYPRFVQRC 546


>gi|45439306 aspartyl-tRNA synthetase [Homo sapiens]
          Length = 501

 Score =  121 bits (304), Expect = 1e-27
 Identities = 129/484 (26%), Positives = 218/484 (45%), Gaps = 57/484 (11%)

Query: 21  KHKPSAKL-SVRDALGAQNASGERIKIQGWIRSVRSQKEVLFLHVNDGS-SLESLQVVAD 78
           + KP   L  VRD L  Q A  E + ++  + + R++ +  FL +     ++++L  V D
Sbjct: 38  QEKPDRVLVRVRD-LTIQKAD-EVVWVRARVHTSRAKGKQCFLVLRQQQFNVQALVAVGD 95

Query: 79  SGLD-----SRELNFGSSVEVQGQLIKSPSK-----RQNVELKAEKIKVIGNCDAKDFPI 128
                    +  +N  S V+V+G + K   K     +Q+VEL  +KI VI   + +  P+
Sbjct: 96  HASKQMVKFAANINKESIVDVEGVVRKVNQKIGSCTQQDVELHVQKIYVISLAEPR-LPL 154

Query: 129 KYK---------ERHPLEYLRQYPHFR-----CRTNVLGSILRIRSEATAAIHSFFKDSG 174
           +           E      + Q           RT+   ++ R++S           + G
Sbjct: 155 QLDDAVRPEAEGEEEGRATVNQDTRLDNRVIDLRTSTSQAVFRLQSGICHLFRETLINKG 214

Query: 175 FVHIHTPIITSNDSEGAGELFQLEPSGKLKVPEENFFNVPAFLTVSGQLHLEVMSGA-FT 233
           FV I TP I S  SEG   +F +           ++F   A+L  S QL+ ++   A F 
Sbjct: 215 FVEIQTPKIISAASEGGANVFTV-----------SYFKNNAYLAQSPQLYKQMCICADFE 263

Query: 234 QVFTFGPTFRAENSQSRRHLAEFYMIEAEISFVDSLQDLMQVIEELFKATTMMVLSKCPE 293
           +VF+ GP FRAE+S + RHL EF  ++ E++F     ++M+ I +        +  +   
Sbjct: 264 KVFSIGPVFRAEDSNTHRHLTEFVGLDIEMAFNYHYHEVMEEIADTMVQIFKGLQERFQT 323

Query: 294 DVELCHKFIAPGQKDRLEHMLKNNFLIISYTEAVEILKQASQNFTFTPEWGADLRTEHEK 353
           +++  +K         LE  L+     + Y EA+ +L++A            DL T +EK
Sbjct: 324 EIQTVNKQFPCEPFKFLEPTLR-----LEYCEALAMLREAGVEMGDED----DLSTPNEK 374

Query: 354 ---YLVKHCGNIPVFVIN-YPLTLKPFYMRDNEDGPQHTVAAVDLLVPGVGELFGGGLRE 409
              +LVK   +   ++++ YPL ++PFY   +   P+ +  + D+ + G  E+  G  R 
Sbjct: 375 LLGHLVKEKYDTDFYILDKYPLAVRPFYTMPDPRNPKQS-NSYDMFMRGE-EILSGAQRI 432

Query: 410 ERYHFLEERLARSGLT-EVYQWYLDLRRFGSVPHGGFGMGFERYLQCILGVDNIKDVIPF 468
                L ER    G+  E  + Y+D  RFG+ PH G G+G ER     LG+ N++    F
Sbjct: 433 HDPQLLTERALHHGIDLEKIKAYIDSFRFGAPPHAGGGIGLERVTMLFLGLHNVRQTSMF 492

Query: 469 PRFP 472
           PR P
Sbjct: 493 PRDP 496


>gi|194272210 lysyl-tRNA synthetase isoform 1 [Homo sapiens]
          Length = 625

 Score = 45.8 bits (107), Expect = 8e-05
 Identities = 97/469 (20%), Positives = 170/469 (36%), Gaps = 86/469 (18%)

Query: 41  GERIKIQGWIRSVRSQKEVLFLHVNDGSSLESLQVVADSGLDSRELNFGSSVEVQGQLIK 100
           GE +K+Q    S   + E  F+H+N+                  +L  G  + VQG   K
Sbjct: 177 GEGVKLQVMANSRNYKSEEEFIHINN------------------KLRRGDIIGVQGNPGK 218

Query: 101 SPSKRQNVELKAEKIKVIGNC---------DAKDFPIKYKERHPLEYLRQYPHFRCRTNV 151
           +  K+  + +   +I ++  C           KD   +Y++R+    L  +   +     
Sbjct: 219 T--KKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQK----- 271

Query: 152 LGSILRIRSEATAAIHSFFKDSGFVHIHTPIITSNDSEGAGELFQLEPSGKLKVP---EE 208
                 IRS+    I SF  + GF+ I TP            +  + P G +  P     
Sbjct: 272 ----FIIRSKIITYIRSFLDELGFLEIETP------------MMNIIPGGAVAKPFITYH 315

Query: 209 NFFNVPAFLTVSGQL-HLEVMSGAFTQVFTFGPTFRAENSQSRRHLAEFYMIEAEISFVD 267
           N  ++  ++ ++ +L H  ++ G   +V+  G  FR E      H  EF   E  +++ D
Sbjct: 316 NELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGI-DLTHNPEFTTCEFYMAYAD 374

Query: 268 SLQDLMQVIEELFKATTMMVLSKC--------PE----DVELCHKFIAPGQKDRLEHMLK 315
              DLM++ E++       +            PE    DV+    F      + LE  L 
Sbjct: 375 -YHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALG 433

Query: 316 NNFLIISYTEAVEILKQASQNFTFTPEWGADLRTEHE-------KYLVKHCGNIPVFVIN 368
                 +  E  E  K                RT          ++L   C N P F+ +
Sbjct: 434 MKLPETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCIN-PTFICD 492

Query: 369 YPLTLKPF--YMRDNEDGPQHTVAAV--DLLVPGVGELFGGGLREERYHFLEERLARSGL 424
           +P  + P   + R  E   +     V    +     EL       +R  F E+  A++  
Sbjct: 493 HPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTEL--NDPMRQRQLFEEQAKAKAAG 550

Query: 425 TE----VYQWYLDLRRFGSVPHGGFGMGFERYLQCILGVDNIKDVIPFP 469
            +    + + +     +G  P  G+GMG +R    +   +NIK+V+ FP
Sbjct: 551 DDEAMFIDENFCTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFP 599


>gi|5031815 lysyl-tRNA synthetase isoform 2 [Homo sapiens]
          Length = 597

 Score = 45.8 bits (107), Expect = 8e-05
 Identities = 97/469 (20%), Positives = 170/469 (36%), Gaps = 86/469 (18%)

Query: 41  GERIKIQGWIRSVRSQKEVLFLHVNDGSSLESLQVVADSGLDSRELNFGSSVEVQGQLIK 100
           GE +K+Q    S   + E  F+H+N+                  +L  G  + VQG   K
Sbjct: 149 GEGVKLQVMANSRNYKSEEEFIHINN------------------KLRRGDIIGVQGNPGK 190

Query: 101 SPSKRQNVELKAEKIKVIGNC---------DAKDFPIKYKERHPLEYLRQYPHFRCRTNV 151
           +  K+  + +   +I ++  C           KD   +Y++R+    L  +   +     
Sbjct: 191 T--KKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQK----- 243

Query: 152 LGSILRIRSEATAAIHSFFKDSGFVHIHTPIITSNDSEGAGELFQLEPSGKLKVP---EE 208
                 IRS+    I SF  + GF+ I TP            +  + P G +  P     
Sbjct: 244 ----FIIRSKIITYIRSFLDELGFLEIETP------------MMNIIPGGAVAKPFITYH 287

Query: 209 NFFNVPAFLTVSGQL-HLEVMSGAFTQVFTFGPTFRAENSQSRRHLAEFYMIEAEISFVD 267
           N  ++  ++ ++ +L H  ++ G   +V+  G  FR E      H  EF   E  +++ D
Sbjct: 288 NELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGI-DLTHNPEFTTCEFYMAYAD 346

Query: 268 SLQDLMQVIEELFKATTMMVLSKC--------PE----DVELCHKFIAPGQKDRLEHMLK 315
              DLM++ E++       +            PE    DV+    F      + LE  L 
Sbjct: 347 -YHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALG 405

Query: 316 NNFLIISYTEAVEILKQASQNFTFTPEWGADLRTEHE-------KYLVKHCGNIPVFVIN 368
                 +  E  E  K                RT          ++L   C N P F+ +
Sbjct: 406 MKLPETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCIN-PTFICD 464

Query: 369 YPLTLKPF--YMRDNEDGPQHTVAAV--DLLVPGVGELFGGGLREERYHFLEERLARSGL 424
           +P  + P   + R  E   +     V    +     EL       +R  F E+  A++  
Sbjct: 465 HPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTEL--NDPMRQRQLFEEQAKAKAAG 522

Query: 425 TE----VYQWYLDLRRFGSVPHGGFGMGFERYLQCILGVDNIKDVIPFP 469
            +    + + +     +G  P  G+GMG +R    +   +NIK+V+ FP
Sbjct: 523 DDEAMFIDENFCTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFP 571


>gi|40789249 aspartyl-tRNA synthetase 2, mitochondrial [Homo
           sapiens]
          Length = 645

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 9/109 (8%)

Query: 365 FVINYPLTLKPFYMRDNEDGPQHTVAAVDLLVPGVGELFGGGLR---EERYHFLEERLAR 421
           F   +P  +   Y    +   QH     DL++ G  E+ GG +R    E   ++   L +
Sbjct: 504 FTAPHPSDIHLLYTEPKKARSQH----YDLVLNG-NEIGGGSIRIHNAELQRYILATLLK 558

Query: 422 SGLTEVYQWYLDLRRFGSVPHGGFGMGFERYLQCILGVDNIKDVIPFPR 470
             + ++    L    +G+ PHGG  +G +R +  + G  +I+DVI FP+
Sbjct: 559 EDV-KMLSHLLQALDYGAPPHGGIALGLDRLICLVTGSPSIRDVIAFPK 606


>gi|16753207 ubiquilin 2 [Homo sapiens]
          Length = 624

 Score = 37.0 bits (84), Expect = 0.039
 Identities = 36/160 (22%), Positives = 64/160 (40%), Gaps = 13/160 (8%)

Query: 180 TPIITSNDSEGAGELFQLEPSGKLKVPEENFFNVPAF----LTVSGQLHLEVMSGAFTQV 235
           TPI T+++  G G L  L     L +   NF  + +     L  S ++ +++M   F Q 
Sbjct: 134 TPISTNSNPFGLGSLGGLAGLSSLGLSSTNFSELQSQMQQQLMASPEMMIQIMENPFVQS 193

Query: 236 FTFGPTFRAENSQSRRHLAEFYMIEAEISFVDSLQDLMQVIEELFKATTMMVLSKCPEDV 295
               P    +   +   + +      EIS + +  D+M+   E+ +   MM      +D+
Sbjct: 194 MLSNPDLMRQLIMANPQMQQLIQRNPEISHLLNNPDIMRQTLEIARNPAMMQEMMRNQDL 253

Query: 296 ELCHKFIAPGQKDRLEHMLKNNFLIISYTEAVEILKQASQ 335
            L +    PG  + L  M         YT+  E +  A+Q
Sbjct: 254 ALSNLESIPGGYNALRRM---------YTDIQEPMLNAAQ 284


>gi|22538426 TRAF3 interacting protein 2 isoform 1 [Homo sapiens]
          Length = 574

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 11/85 (12%)

Query: 271 DLMQVIEELFKATTMMVL----SKCPEDVELCHKFIAPGQKDRLEHMLKNNFLIISYTEA 326
           D+++ +E   +  T+M++     K  +DVE      A  Q D  EH L   +  I     
Sbjct: 451 DIIKWMERYLRDKTVMIIVAISPKYKQDVEG-----AESQLDEDEHGLHTKY--IHRMMQ 503

Query: 327 VEILKQASQNFTFTPEWGADLRTEH 351
           +E +KQ S NF F P    + + EH
Sbjct: 504 IEFIKQGSMNFRFIPVLFPNAKKEH 528


>gi|22538428 TRAF3 interacting protein 2 isoform 2 [Homo sapiens]
          Length = 565

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 11/85 (12%)

Query: 271 DLMQVIEELFKATTMMVL----SKCPEDVELCHKFIAPGQKDRLEHMLKNNFLIISYTEA 326
           D+++ +E   +  T+M++     K  +DVE      A  Q D  EH L   +  I     
Sbjct: 442 DIIKWMERYLRDKTVMIIVAISPKYKQDVEG-----AESQLDEDEHGLHTKY--IHRMMQ 494

Query: 327 VEILKQASQNFTFTPEWGADLRTEH 351
           +E +KQ S NF F P    + + EH
Sbjct: 495 IEFIKQGSMNFRFIPVLFPNAKKEH 519


>gi|239735605 leucine rich repeat containing 36 isoform 1 [Homo
           sapiens]
          Length = 754

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 13/48 (27%), Positives = 26/48 (54%)

Query: 62  LHVNDGSSLESLQVVADSGLDSRELNFGSSVEVQGQLIKSPSKRQNVE 109
           L V D S +   Q+ +D GL++ +  +  ++ + G L K P + +N +
Sbjct: 311 LDVGDSSQIHPYQLPSDVGLENYDSCYSQTLSLHGSLGKRPQRSKNYQ 358


>gi|239735598 leucine rich repeat containing 36 isoform 2 [Homo
           sapiens]
          Length = 633

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 13/48 (27%), Positives = 26/48 (54%)

Query: 62  LHVNDGSSLESLQVVADSGLDSRELNFGSSVEVQGQLIKSPSKRQNVE 109
           L V D S +   Q+ +D GL++ +  +  ++ + G L K P + +N +
Sbjct: 190 LDVGDSSQIHPYQLPSDVGLENYDSCYSQTLSLHGSLGKRPQRSKNYQ 237


>gi|194248081 tripartite motif-containing 2 isoform 2 [Homo sapiens]
          Length = 744

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 24/115 (20%), Positives = 53/115 (46%), Gaps = 1/115 (0%)

Query: 52  SVRSQKEVLFLHVNDGSSLESLQVVADSGLDSRELNFGSSVEVQGQLIKSPSKRQNVELK 111
           +VR    ++ L VN G   + LQ   D+ L  +E +  S      Q +   ++ + + +K
Sbjct: 216 NVRKSVLLMELEVNYGLKHKVLQSQLDTLLQGQE-SIKSCSNFTAQALNHGTETEVLLVK 274

Query: 112 AEKIKVIGNCDAKDFPIKYKERHPLEYLRQYPHFRCRTNVLGSILRIRSEATAAI 166
            +  + +     +DFP+  +E   L+++ +    +   + LG+IL   + A+  +
Sbjct: 275 KQMSEKLNELADQDFPLHPRENDQLDFIVETEGLKKSIHNLGTILTTNAVASETV 329


>gi|194248079 tripartite motif-containing 2 isoform 1 [Homo sapiens]
          Length = 771

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 24/115 (20%), Positives = 53/115 (46%), Gaps = 1/115 (0%)

Query: 52  SVRSQKEVLFLHVNDGSSLESLQVVADSGLDSRELNFGSSVEVQGQLIKSPSKRQNVELK 111
           +VR    ++ L VN G   + LQ   D+ L  +E +  S      Q +   ++ + + +K
Sbjct: 243 NVRKSVLLMELEVNYGLKHKVLQSQLDTLLQGQE-SIKSCSNFTAQALNHGTETEVLLVK 301

Query: 112 AEKIKVIGNCDAKDFPIKYKERHPLEYLRQYPHFRCRTNVLGSILRIRSEATAAI 166
            +  + +     +DFP+  +E   L+++ +    +   + LG+IL   + A+  +
Sbjct: 302 KQMSEKLNELADQDFPLHPRENDQLDFIVETEGLKKSIHNLGTILTTNAVASETV 356


>gi|84662750 hypothetical protein LOC284083 [Homo sapiens]
          Length = 570

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 8/68 (11%)

Query: 19  FPKHKPSAKL--------SVRDALGAQNASGERIKIQGWIRSVRSQKEVLFLHVNDGSSL 70
           +P+ KPSAK+        +VR  +   +  G R+ I   ++SV     V    V++GS  
Sbjct: 302 YPETKPSAKVLVSSQVESNVRTPIRGNSEVGRRVTISPGVQSVEPTHHVTVPSVSEGSHK 361

Query: 71  ESLQVVAD 78
            S+ V  +
Sbjct: 362 SSMFVTPE 369


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.139    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,180,535
Number of Sequences: 37866
Number of extensions: 813174
Number of successful extensions: 1454
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1432
Number of HSP's gapped (non-prelim): 18
length of query: 477
length of database: 18,247,518
effective HSP length: 106
effective length of query: 371
effective length of database: 14,233,722
effective search space: 5280710862
effective search space used: 5280710862
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.