Search of human proteins with 22507417

Search of human proteins with 22507417

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|22507417 PTPN13-like, Y-linked [Homo sapiens]
         (147 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|50959167 PTPN13-like, Y-linked 2 [Homo sapiens]                    307   2e-84
gi|22507417 PTPN13-like, Y-linked [Homo sapiens]                      307   2e-84
gi|45827718 ectonucleoside triphosphate diphosphohydrolase 2 iso...    28   2.8  
gi|226529917 triosephosphate isomerase 1 isoform 2 [Homo sapiens]      28   3.6  
gi|4507645 triosephosphate isomerase 1 isoform 1 [Homo sapiens]        28   3.6  
gi|147904700 semaphorin 5A [Homo sapiens]                              27   4.7  
gi|45267839 mesoderm induction early response 1, family member 2...    27   6.1  

>gi|50959167 PTPN13-like, Y-linked 2 [Homo sapiens]
          Length = 147

 Score =  307 bits (786), Expect = 2e-84
 Identities = 147/147 (100%), Positives = 147/147 (100%)

Query: 1   MGATGLGFLLSWRQDNLNGTDCQGCNILYFSETTGSMCSELSLNRGLEARRKKDLKDSFL 60
           MGATGLGFLLSWRQDNLNGTDCQGCNILYFSETTGSMCSELSLNRGLEARRKKDLKDSFL
Sbjct: 1   MGATGLGFLLSWRQDNLNGTDCQGCNILYFSETTGSMCSELSLNRGLEARRKKDLKDSFL 60

Query: 61  WRYGKVGCISLPLREMTAWINPPQISEIFQGYHQRVHGADALSLQTNSLRSRLSSQCLGQ 120
           WRYGKVGCISLPLREMTAWINPPQISEIFQGYHQRVHGADALSLQTNSLRSRLSSQCLGQ
Sbjct: 61  WRYGKVGCISLPLREMTAWINPPQISEIFQGYHQRVHGADALSLQTNSLRSRLSSQCLGQ 120

Query: 121 SFLLRTLERGRGFRALGDICGHVHEED 147
           SFLLRTLERGRGFRALGDICGHVHEED
Sbjct: 121 SFLLRTLERGRGFRALGDICGHVHEED 147


>gi|22507417 PTPN13-like, Y-linked [Homo sapiens]
          Length = 147

 Score =  307 bits (786), Expect = 2e-84
 Identities = 147/147 (100%), Positives = 147/147 (100%)

Query: 1   MGATGLGFLLSWRQDNLNGTDCQGCNILYFSETTGSMCSELSLNRGLEARRKKDLKDSFL 60
           MGATGLGFLLSWRQDNLNGTDCQGCNILYFSETTGSMCSELSLNRGLEARRKKDLKDSFL
Sbjct: 1   MGATGLGFLLSWRQDNLNGTDCQGCNILYFSETTGSMCSELSLNRGLEARRKKDLKDSFL 60

Query: 61  WRYGKVGCISLPLREMTAWINPPQISEIFQGYHQRVHGADALSLQTNSLRSRLSSQCLGQ 120
           WRYGKVGCISLPLREMTAWINPPQISEIFQGYHQRVHGADALSLQTNSLRSRLSSQCLGQ
Sbjct: 61  WRYGKVGCISLPLREMTAWINPPQISEIFQGYHQRVHGADALSLQTNSLRSRLSSQCLGQ 120

Query: 121 SFLLRTLERGRGFRALGDICGHVHEED 147
           SFLLRTLERGRGFRALGDICGHVHEED
Sbjct: 121 SFLLRTLERGRGFRALGDICGHVHEED 147


>gi|45827718 ectonucleoside triphosphate diphosphohydrolase 2
           isoform 1 [Homo sapiens]
          Length = 495

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)

Query: 110 RSRLSSQCLGQSFLLRTLERGRGF--RALGDI 139
           R+RL+  C G  F+ + L RG GF  RA G +
Sbjct: 392 RARLADYCAGAMFVQQLLSRGYGFDERAFGGV 423


>gi|226529917 triosephosphate isomerase 1 isoform 2 [Homo sapiens]
          Length = 286

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 9   LLSWRQDNLNGTDCQGCNILYFSETTGSMCSELS 42
           L  W + N++    Q   I+Y    TG+ C EL+
Sbjct: 226 LRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELA 259


>gi|4507645 triosephosphate isomerase 1 isoform 1 [Homo sapiens]
          Length = 249

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 9   LLSWRQDNLNGTDCQGCNILYFSETTGSMCSELS 42
           L  W + N++    Q   I+Y    TG+ C EL+
Sbjct: 189 LRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELA 222


>gi|147904700 semaphorin 5A [Homo sapiens]
          Length = 1074

 Score = 27.3 bits (59), Expect = 4.7
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 18  NGTDCQGCNILYFSETTGSMCSEL 41
           NG DC GCN+ Y S  T + C EL
Sbjct: 682 NGPDCAGCNVEYQSCNT-NPCPEL 704


>gi|45267839 mesoderm induction early response 1, family member 2
           [Homo sapiens]
          Length = 545

 Score = 26.9 bits (58), Expect = 6.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 95  RVHGADALSLQTNSLRSRLSSQCLGQSFLLRTLER 129
           RVHG +   +Q N +R+R   +C+   +L +  ER
Sbjct: 315 RVHGKNFHLIQANKVRTRSVGECVEYYYLWKKSER 349


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.138    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,812,856
Number of Sequences: 37866
Number of extensions: 220498
Number of successful extensions: 466
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 460
Number of HSP's gapped (non-prelim): 7
length of query: 147
length of database: 18,247,518
effective HSP length: 93
effective length of query: 54
effective length of database: 14,725,980
effective search space: 795202920
effective search space used: 795202920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.