Search of human proteins with 224809576

Search of human proteins with 224809576

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|224809576 immunity-related GTPase family, M [Homo sapiens]
         (181 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|224809576 immunity-related GTPase family, M [Homo sapiens]         361   e-100
gi|10257429 immunity-related GTPase family, cinema [Homo sapiens]      94   6e-20
gi|133930786 egf-like module-containing mucin-like receptor 3 [H...    29   1.9  
gi|34485727 NCK-associated protein 1-like [Homo sapiens]               28   3.3  
gi|56549125 dynamin 2 isoform 4 [Homo sapiens]                         28   5.6  
gi|56549123 dynamin 2 isoform 2 [Homo sapiens]                         28   5.6  
gi|56549121 dynamin 2 isoform 1 [Homo sapiens]                         28   5.6  
gi|56549119 dynamin 2 isoform 3 [Homo sapiens]                         28   5.6  

>gi|224809576 immunity-related GTPase family, M [Homo sapiens]
          Length = 181

 Score =  361 bits (926), Expect = e-100
 Identities = 181/181 (100%), Positives = 181/181 (100%)

Query: 1   MEAMNVEKASADGNLPEVISNIKETLKIVSRTPVNITMAGDSGNGMSTFISALRNTGHEG 60
           MEAMNVEKASADGNLPEVISNIKETLKIVSRTPVNITMAGDSGNGMSTFISALRNTGHEG
Sbjct: 1   MEAMNVEKASADGNLPEVISNIKETLKIVSRTPVNITMAGDSGNGMSTFISALRNTGHEG 60

Query: 61  KASPPTELVKATQRCASYFSSHFSNVVLWDLPGTGSATTTLENYLMEMQFNRYDFIMVAS 120
           KASPPTELVKATQRCASYFSSHFSNVVLWDLPGTGSATTTLENYLMEMQFNRYDFIMVAS
Sbjct: 61  KASPPTELVKATQRCASYFSSHFSNVVLWDLPGTGSATTTLENYLMEMQFNRYDFIMVAS 120

Query: 121 AQFSMNHVMLAKTAEDMGKKFYIVWTKLDMDLSTGALPEVQLLQIRENVLENLQKERVCE 180
           AQFSMNHVMLAKTAEDMGKKFYIVWTKLDMDLSTGALPEVQLLQIRENVLENLQKERVCE
Sbjct: 121 AQFSMNHVMLAKTAEDMGKKFYIVWTKLDMDLSTGALPEVQLLQIRENVLENLQKERVCE 180

Query: 181 Y 181
           Y
Sbjct: 181 Y 181


>gi|10257429 immunity-related GTPase family, cinema [Homo sapiens]
          Length = 463

 Score = 94.0 bits (232), Expect = 6e-20
 Identities = 58/180 (32%), Positives = 93/180 (51%), Gaps = 8/180 (4%)

Query: 9   ASADGNLPEVISNIKETLKIVSRTPVNITMAGDSGNGMSTFISALRNTGHEGKASPPTEL 68
           A   G+LP+  S+++E L       + + + G+SG G S+ I+ALR    E   +  T +
Sbjct: 30  AFESGDLPQAASHLQELLASTESIRLEVGVTGESGAGKSSLINALRGLEAEDPGAALTGV 89

Query: 69  VKATQRCASYFSSHFSNVVLWDLPGTGSATTTLENYLMEMQFNRYD-FIMVASAQFSMNH 127
           ++ T + + Y    F +V LWDLPG GS     + YL ++ F+RYD F++V+  +     
Sbjct: 90  METTMQPSPYPHPQFPDVTLWDLPGAGSPGCPADKYLKQVDFSRYDFFLLVSPRRCGAVE 149

Query: 128 VMLAKTAEDMGKKFYIVWTKLDMDLS-------TGALPEVQLLQIRENVLENLQKERVCE 180
             LA      GKKFY V TK+D DL+       +G      L +IR++  E L++  V +
Sbjct: 150 TRLAAEILCQGKKFYFVRTKVDEDLAATRTQRPSGFREAAVLQEIRDHCAERLREAGVAD 209


>gi|133930786 egf-like module-containing mucin-like receptor 3 [Homo
           sapiens]
          Length = 652

 Score = 29.3 bits (64), Expect = 1.9
 Identities = 17/66 (25%), Positives = 29/66 (43%)

Query: 44  NGMSTFISALRNTGHEGKASPPTELVKATQRCASYFSSHFSNVVLWDLPGTGSATTTLEN 103
           +G   F ++  NT  +  +S  TE  K  Q+    F S  +N  LW   G    ++T   
Sbjct: 104 SGNEQFSNSNENTCQDTTSSKTTEGRKELQKIVDKFESLLTNQTLWRTEGRQEISSTATT 163

Query: 104 YLMEMQ 109
            L +++
Sbjct: 164 ILRDVE 169


>gi|34485727 NCK-associated protein 1-like [Homo sapiens]
          Length = 1127

 Score = 28.5 bits (62), Expect = 3.3
 Identities = 13/51 (25%), Positives = 25/51 (49%)

Query: 36 ITMAGDSGNGMSTFISALRNTGHEGKASPPTELVKATQRCASYFSSHFSNV 86
          +T+  D G G+   +  ++ T  + K+ PP  L K+ +    Y +  F N+
Sbjct: 15 LTILNDRGQGVLIRMYNIKKTCSDPKSKPPFLLEKSMEPSLKYINKKFPNI 65


>gi|56549125 dynamin 2 isoform 4 [Homo sapiens]
          Length = 866

 Score = 27.7 bits (60), Expect = 5.6
 Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 16/108 (14%)

Query: 79  FSSHFSNVVLWDLPG-----TGSATTTLENYLMEM--QF-NRYDFIMVASAQFSM----- 125
           +S H  N+ L DLPG      G     +E  + +M  QF +R   +++A    +M     
Sbjct: 125 YSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIKDMILQFISRESSLILAVTPANMDLANS 184

Query: 126 NHVMLAKTAEDMGKKFYIVWTKLD-MDLSTGA--LPEVQLLQIRENVL 170
           + + LAK  +  G +   V TKLD MD  T A  + E +LL +R   +
Sbjct: 185 DALKLAKEVDPQGLRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYI 232


>gi|56549123 dynamin 2 isoform 2 [Homo sapiens]
          Length = 870

 Score = 27.7 bits (60), Expect = 5.6
 Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 16/108 (14%)

Query: 79  FSSHFSNVVLWDLPG-----TGSATTTLENYLMEM--QF-NRYDFIMVASAQFSM----- 125
           +S H  N+ L DLPG      G     +E  + +M  QF +R   +++A    +M     
Sbjct: 125 YSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIKDMILQFISRESSLILAVTPANMDLANS 184

Query: 126 NHVMLAKTAEDMGKKFYIVWTKLD-MDLSTGA--LPEVQLLQIRENVL 170
           + + LAK  +  G +   V TKLD MD  T A  + E +LL +R   +
Sbjct: 185 DALKLAKEVDPQGLRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYI 232


>gi|56549121 dynamin 2 isoform 1 [Homo sapiens]
          Length = 870

 Score = 27.7 bits (60), Expect = 5.6
 Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 16/108 (14%)

Query: 79  FSSHFSNVVLWDLPG-----TGSATTTLENYLMEM--QF-NRYDFIMVASAQFSM----- 125
           +S H  N+ L DLPG      G     +E  + +M  QF +R   +++A    +M     
Sbjct: 125 YSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIKDMILQFISRESSLILAVTPANMDLANS 184

Query: 126 NHVMLAKTAEDMGKKFYIVWTKLD-MDLSTGA--LPEVQLLQIRENVL 170
           + + LAK  +  G +   V TKLD MD  T A  + E +LL +R   +
Sbjct: 185 DALKLAKEVDPQGLRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYI 232


>gi|56549119 dynamin 2 isoform 3 [Homo sapiens]
          Length = 866

 Score = 27.7 bits (60), Expect = 5.6
 Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 16/108 (14%)

Query: 79  FSSHFSNVVLWDLPG-----TGSATTTLENYLMEM--QF-NRYDFIMVASAQFSM----- 125
           +S H  N+ L DLPG      G     +E  + +M  QF +R   +++A    +M     
Sbjct: 125 YSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIKDMILQFISRESSLILAVTPANMDLANS 184

Query: 126 NHVMLAKTAEDMGKKFYIVWTKLD-MDLSTGA--LPEVQLLQIRENVL 170
           + + LAK  +  G +   V TKLD MD  T A  + E +LL +R   +
Sbjct: 185 DALKLAKEVDPQGLRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYI 232


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.129    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,209,518
Number of Sequences: 37866
Number of extensions: 230856
Number of successful extensions: 571
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 566
Number of HSP's gapped (non-prelim): 8
length of query: 181
length of database: 18,247,518
effective HSP length: 96
effective length of query: 85
effective length of database: 14,612,382
effective search space: 1242052470
effective search space used: 1242052470
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.