Search of human proteins with 115527094

Search of human proteins with 115527094

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|115527094 hypothetical protein LOC171546 [Homo sapiens]
         (71 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|115527094 hypothetical protein LOC171546 [Homo sapiens]            149   4e-37
gi|239747432 PREDICTED: hypothetical LOC100131965 [Homo sapiens]      106   4e-24
gi|93141042 ADMP [Homo sapiens]                                        71   2e-13
gi|94721239 isoleucine tRNA synthetase [Homo sapiens]                  27   2.6  
gi|94721241 isoleucine tRNA synthetase [Homo sapiens]                  27   2.6  
gi|112293285 spindlin [Homo sapiens]                                   27   3.5  
gi|108796661 spindlin family, member 4 [Homo sapiens]                  26   5.9  

>gi|115527094 hypothetical protein LOC171546 [Homo sapiens]
          Length = 71

 Score =  149 bits (377), Expect = 4e-37
 Identities = 71/71 (100%), Positives = 71/71 (100%)

Query: 1  MAGMALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHI 60
          MAGMALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHI
Sbjct: 1  MAGMALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHI 60

Query: 61 MAILHYFEIVQ 71
          MAILHYFEIVQ
Sbjct: 61 MAILHYFEIVQ 71


>gi|239747432 PREDICTED: hypothetical LOC100131965 [Homo sapiens]
          Length = 189

 Score =  106 bits (264), Expect = 4e-24
 Identities = 53/71 (74%), Positives = 56/71 (78%), Gaps = 4/71 (5%)

Query: 1   MAGMALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHI 60
           +AGM L RAWK MSWFYYQ+LLVT LYMLEP ER V NS LVSI     Y GY+FM QHI
Sbjct: 123 LAGMELVRAWKXMSWFYYQHLLVTMLYMLEPEERKVLNSTLVSI----XYAGYIFMTQHI 178

Query: 61  MAILHYFEIVQ 71
           MAILHYFEIVQ
Sbjct: 179 MAILHYFEIVQ 189


>gi|93141042 ADMP [Homo sapiens]
          Length = 76

 Score = 71.2 bits (173), Expect = 2e-13
 Identities = 29/64 (45%), Positives = 44/64 (68%)

Query: 4  MALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHIMAI 63
          M L R  +  SW YYQY +++   +LEPWER++FN++L++I+ M +YT YVF+P HI   
Sbjct: 1  MDLRRVKEYFSWLYYQYQIISCCAVLEPWERSMFNTILLTIIAMVVYTAYVFIPIHIRLA 60

Query: 64 LHYF 67
            +F
Sbjct: 61 WEFF 64


>gi|94721239 isoleucine tRNA synthetase [Homo sapiens]
          Length = 1262

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 15  WFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHIMAILHY 66
           WFY   +L TAL+   P++  + N ++++  G  +       P  +  I  Y
Sbjct: 567 WFYTLLVLATALFGQPPFKNVIVNGLVLASDGQKMSKRKKNYPDPVSIIQKY 618


>gi|94721241 isoleucine tRNA synthetase [Homo sapiens]
          Length = 1262

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 15  WFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHIMAILHY 66
           WFY   +L TAL+   P++  + N ++++  G  +       P  +  I  Y
Sbjct: 567 WFYTLLVLATALFGQPPFKNVIVNGLVLASDGQKMSKRKKNYPDPVSIIQKY 618


>gi|112293285 spindlin [Homo sapiens]
          Length = 262

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 3   GMALARAWKQMSWFYYQYLLVTALYMLE 30
           GM LARA    +WFY  Y     LYM +
Sbjct: 153 GMVLARAPVMNTWFYITYEKDPVLYMYQ 180


>gi|108796661 spindlin family, member 4 [Homo sapiens]
          Length = 249

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 13/26 (50%), Positives = 14/26 (53%)

Query: 3   GMALARAWKQMSWFYYQYLLVTALYM 28
           GM LARA    +WFY  Y     LYM
Sbjct: 139 GMVLARAPVMDTWFYITYEKDPVLYM 164


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.333    0.139    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,161,568
Number of Sequences: 37866
Number of extensions: 57677
Number of successful extensions: 229
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 221
Number of HSP's gapped (non-prelim): 7
length of query: 71
length of database: 18,247,518
effective HSP length: 44
effective length of query: 27
effective length of database: 16,581,414
effective search space: 447698178
effective search space used: 447698178
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.