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Search of human proteins with 11545757
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|11545757 nuclear RNA export factor 3 [Homo sapiens]
(531 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11545757 nuclear RNA export factor 3 [Homo sapiens] 1092 0.0
gi|153791282 nuclear RNA export factor 2B [Homo sapiens] 545 e-155
gi|14277694 nuclear RNA export factor 2 [Homo sapiens] 545 e-155
gi|13430854 nuclear RNA export factor 2 [Homo sapiens] 545 e-155
gi|15487670 nuclear RNA export factor 1 isoform 1 [Homo sapiens] 504 e-143
gi|254039592 nuclear RNA export factor 5 [Homo sapiens] 292 5e-79
gi|125625324 nuclear RNA export factor 1 isoform 2 [Homo sapiens] 231 1e-60
gi|7019499 peroxisome proliferator-activated receptor gamma, coa... 31 3.2
gi|194272202 actin binding LIM protein family, member 2 isoform ... 30 5.5
gi|194272198 actin binding LIM protein family, member 2 isoform ... 30 5.5
gi|194272196 actin binding LIM protein family, member 2 isoform ... 30 5.5
gi|94721324 non-SMC element 1 homolog [Homo sapiens] 30 7.2
gi|111548652 hypothetical protein LOC51057 isoform 2 [Homo sapiens] 29 9.4
>gi|11545757 nuclear RNA export factor 3 [Homo sapiens]
Length = 531
Score = 1092 bits (2824), Expect = 0.0
Identities = 531/531 (100%), Positives = 531/531 (100%)
Query: 1 MSLPSGHTTGHTDQVVQRRARCWDIYQRRFSSRSEPVNPGMHSSSHQQQDGDAAMHGAHM 60
MSLPSGHTTGHTDQVVQRRARCWDIYQRRFSSRSEPVNPGMHSSSHQQQDGDAAMHGAHM
Sbjct: 1 MSLPSGHTTGHTDQVVQRRARCWDIYQRRFSSRSEPVNPGMHSSSHQQQDGDAAMHGAHM 60
Query: 61 DSPVRYTPYTISPYNRKGSFRKQDQTHVNMEREQKPPERRMEGNMPDGTLGSWFKITVPF 120
DSPVRYTPYTISPYNRKGSFRKQDQTHVNMEREQKPPERRMEGNMPDGTLGSWFKITVPF
Sbjct: 61 DSPVRYTPYTISPYNRKGSFRKQDQTHVNMEREQKPPERRMEGNMPDGTLGSWFKITVPF 120
Query: 121 GIKYNEKWLLNLIQNECSVPFVPVEFHYENMHASFFVENASIAYALKNVSGKIWDEDNEK 180
GIKYNEKWLLNLIQNECSVPFVPVEFHYENMHASFFVENASIAYALKNVSGKIWDEDNEK
Sbjct: 121 GIKYNEKWLLNLIQNECSVPFVPVEFHYENMHASFFVENASIAYALKNVSGKIWDEDNEK 180
Query: 181 ISIFVNPAGIPHFVHRELKSEKVEQIKLAMNQQCDVSQEALDIQRLPFYPDMVNRDTKMA 240
ISIFVNPAGIPHFVHRELKSEKVEQIKLAMNQQCDVSQEALDIQRLPFYPDMVNRDTKMA
Sbjct: 181 ISIFVNPAGIPHFVHRELKSEKVEQIKLAMNQQCDVSQEALDIQRLPFYPDMVNRDTKMA 240
Query: 241 SNPRKCMAASLDVHEENIPTVMSAGEMDKWKGIEPGEKCADRSPVCTTFSDTSSNINSIL 300
SNPRKCMAASLDVHEENIPTVMSAGEMDKWKGIEPGEKCADRSPVCTTFSDTSSNINSIL
Sbjct: 241 SNPRKCMAASLDVHEENIPTVMSAGEMDKWKGIEPGEKCADRSPVCTTFSDTSSNINSIL 300
Query: 301 ELFPKLLCLDGQQSPRATLCGTEAHKRLPTCKGSFFGSEMLKNLVLQFLQQYYLIYDSGD 360
ELFPKLLCLDGQQSPRATLCGTEAHKRLPTCKGSFFGSEMLKNLVLQFLQQYYLIYDSGD
Sbjct: 301 ELFPKLLCLDGQQSPRATLCGTEAHKRLPTCKGSFFGSEMLKNLVLQFLQQYYLIYDSGD 360
Query: 361 RQGLLSAYHDEACFSLSIPFNPEDSAPSSFCKFFKDSRNIKILKDPYLRGELLKHTKLDI 420
RQGLLSAYHDEACFSLSIPFNPEDSAPSSFCKFFKDSRNIKILKDPYLRGELLKHTKLDI
Sbjct: 361 RQGLLSAYHDEACFSLSIPFNPEDSAPSSFCKFFKDSRNIKILKDPYLRGELLKHTKLDI 420
Query: 421 VDSLSALPKTQHDLSSFLVDMWYQTEWMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPG 480
VDSLSALPKTQHDLSSFLVDMWYQTEWMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPG
Sbjct: 421 VDSLSALPKTQHDLSSFLVDMWYQTEWMLCFSVNGVFKEVEGQSQGSVLAFTRTFIATPG 480
Query: 481 SSSSLCIVNDKLFVRDTSHQGTQSALFTLVPTAFSSSVPAFSQEQQKMLPS 531
SSSSLCIVNDKLFVRDTSHQGTQSALFTLVPTAFSSSVPAFSQEQQKMLPS
Sbjct: 481 SSSSLCIVNDKLFVRDTSHQGTQSALFTLVPTAFSSSVPAFSQEQQKMLPS 531
>gi|153791282 nuclear RNA export factor 2B [Homo sapiens]
Length = 626
Score = 545 bits (1403), Expect = e-155
Identities = 290/552 (52%), Positives = 373/552 (67%), Gaps = 40/552 (7%)
Query: 17 QRRARCWDIYQRRFSSRSEPVNPGMHSS--SH-QQQDGDAAMHGAHMDSPVRYTPYTISP 73
Q R + ++ F RS G + SH Q+ DG M H D +R+TPY+I
Sbjct: 26 QGRKKGGSSFRDNFDKRSCHYEHGGYERPPSHCQENDGSVEMRDVHKDQQLRHTPYSIR- 84
Query: 74 YNRKGSFRKQDQTHVNMEREQKPPERRMEGNMPDGTLGSWFKITVPFGIKYNEKWLLNLI 133
R+ + +D+ + R +KPPER+M N DG +WFK+T+P+GIKY++ WL+N I
Sbjct: 85 CERRMKWHSEDEIRITTWRNRKPPERKMSQNTQDGYTRNWFKVTIPYGIKYDKAWLMNSI 144
Query: 134 QNECSVPFVPVEFHYENMHASFFVENASIAYALKNVSGKIWDEDNEKISIFVNPAGIPHF 193
Q+ CS F PV+FHY A FFV++AS A ALK+VS KI+D++N+KI IFVN + P+
Sbjct: 145 QSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDVSYKIYDDENQKICIFVNHSTAPYS 204
Query: 194 VHRELKSEKVEQIKLAMNQQCDVSQEALDIQRLPFYPDMVNRDTKMASNPRKCMAASLDV 253
V +LK ++E +KL MN++ +VSQ+ALD+Q L F PD++ RD + N R CMAA+L +
Sbjct: 205 VKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFDPDLMGRDIDIILNRRNCMAATLKI 264
Query: 254 HEENIPTVMS------------------------------------AGEMDKWKGIEPGE 277
E N P ++S A E+ K KG++ E
Sbjct: 265 IERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLKLEE 324
Query: 278 KCADRSPVCTTFSDTSSNINSILELFPKLLCLDGQQSPRATLCGTEAHKRLPTCKGSFFG 337
+ +P+C+TFSD S+ +++I + FPKLL LDG++ + ++ + + CK +F G
Sbjct: 325 LWLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRELSAPVIVDIDSSETMKPCKENFTG 384
Query: 338 SEMLKNLVLQFLQQYYLIYDSGDRQGLLSAYHDEACFSLSIPFNPEDSAPSSFCKFFKDS 397
SE LK+LVLQFLQQYY IYDSGDRQGLL AYHDEACFSL+IPF+P+DSAPSS CK+F+DS
Sbjct: 385 SETLKHLVLQFLQQYYSIYDSGDRQGLLGAYHDEACFSLAIPFDPKDSAPSSLCKYFEDS 444
Query: 398 RNIKILKDPYLRGELLKHTKLDIVDSLSALPKTQHDLSSFLVDMWYQTEWMLCFSVNGVF 457
RN+K LKDPYL+GELL+ TK DIVDSLSALPKTQHDLSS LVD+W QTE MLCFSVNGVF
Sbjct: 445 RNMKTLKDPYLKGELLRRTKRDIVDSLSALPKTQHDLSSILVDVWCQTERMLCFSVNGVF 504
Query: 458 KEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDKLFVRDTSHQGTQSALFTLVPTAFSSS 517
KEVEGQSQGSVLAFTRTFIATPGSSSSLCIVND+LFVRD S Q TQSA V T SSS
Sbjct: 505 KEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDELFVRDASPQETQSAFSIPVSTLSSSS 564
Query: 518 VPAFSQEQQKML 529
P+ SQEQQ+M+
Sbjct: 565 EPSLSQEQQEMV 576
>gi|14277694 nuclear RNA export factor 2 [Homo sapiens]
Length = 626
Score = 545 bits (1403), Expect = e-155
Identities = 290/552 (52%), Positives = 373/552 (67%), Gaps = 40/552 (7%)
Query: 17 QRRARCWDIYQRRFSSRSEPVNPGMHSS--SH-QQQDGDAAMHGAHMDSPVRYTPYTISP 73
Q R + ++ F RS G + SH Q+ DG M H D +R+TPY+I
Sbjct: 26 QGRKKGGSSFRDNFDKRSCHYEHGGYERPPSHCQENDGSVEMRDVHKDQQLRHTPYSIR- 84
Query: 74 YNRKGSFRKQDQTHVNMEREQKPPERRMEGNMPDGTLGSWFKITVPFGIKYNEKWLLNLI 133
R+ + +D+ + R +KPPER+M N DG +WFK+T+P+GIKY++ WL+N I
Sbjct: 85 CERRMKWHSEDEIRITTWRNRKPPERKMSQNTQDGYTRNWFKVTIPYGIKYDKAWLMNSI 144
Query: 134 QNECSVPFVPVEFHYENMHASFFVENASIAYALKNVSGKIWDEDNEKISIFVNPAGIPHF 193
Q+ CS F PV+FHY A FFV++AS A ALK+VS KI+D++N+KI IFVN + P+
Sbjct: 145 QSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDVSYKIYDDENQKICIFVNHSTAPYS 204
Query: 194 VHRELKSEKVEQIKLAMNQQCDVSQEALDIQRLPFYPDMVNRDTKMASNPRKCMAASLDV 253
V +LK ++E +KL MN++ +VSQ+ALD+Q L F PD++ RD + N R CMAA+L +
Sbjct: 205 VKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFDPDLMGRDIDIILNRRNCMAATLKI 264
Query: 254 HEENIPTVMS------------------------------------AGEMDKWKGIEPGE 277
E N P ++S A E+ K KG++ E
Sbjct: 265 IERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLKLEE 324
Query: 278 KCADRSPVCTTFSDTSSNINSILELFPKLLCLDGQQSPRATLCGTEAHKRLPTCKGSFFG 337
+ +P+C+TFSD S+ +++I + FPKLL LDG++ + ++ + + CK +F G
Sbjct: 325 LWLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRELSAPVIVDIDSSETMKPCKENFTG 384
Query: 338 SEMLKNLVLQFLQQYYLIYDSGDRQGLLSAYHDEACFSLSIPFNPEDSAPSSFCKFFKDS 397
SE LK+LVLQFLQQYY IYDSGDRQGLL AYHDEACFSL+IPF+P+DSAPSS CK+F+DS
Sbjct: 385 SETLKHLVLQFLQQYYSIYDSGDRQGLLGAYHDEACFSLAIPFDPKDSAPSSLCKYFEDS 444
Query: 398 RNIKILKDPYLRGELLKHTKLDIVDSLSALPKTQHDLSSFLVDMWYQTEWMLCFSVNGVF 457
RN+K LKDPYL+GELL+ TK DIVDSLSALPKTQHDLSS LVD+W QTE MLCFSVNGVF
Sbjct: 445 RNMKTLKDPYLKGELLRRTKRDIVDSLSALPKTQHDLSSILVDVWCQTERMLCFSVNGVF 504
Query: 458 KEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDKLFVRDTSHQGTQSALFTLVPTAFSSS 517
KEVEGQSQGSVLAFTRTFIATPGSSSSLCIVND+LFVRD S Q TQSA V T SSS
Sbjct: 505 KEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDELFVRDASPQETQSAFSIPVSTLSSSS 564
Query: 518 VPAFSQEQQKML 529
P+ SQEQQ+M+
Sbjct: 565 EPSLSQEQQEMV 576
>gi|13430854 nuclear RNA export factor 2 [Homo sapiens]
Length = 626
Score = 545 bits (1403), Expect = e-155
Identities = 290/552 (52%), Positives = 373/552 (67%), Gaps = 40/552 (7%)
Query: 17 QRRARCWDIYQRRFSSRSEPVNPGMHSS--SH-QQQDGDAAMHGAHMDSPVRYTPYTISP 73
Q R + ++ F RS G + SH Q+ DG M H D +R+TPY+I
Sbjct: 26 QGRKKGGSSFRDNFDKRSCHYEHGGYERPPSHCQENDGSVEMRDVHKDQQLRHTPYSIR- 84
Query: 74 YNRKGSFRKQDQTHVNMEREQKPPERRMEGNMPDGTLGSWFKITVPFGIKYNEKWLLNLI 133
R+ + +D+ + R +KPPER+M N DG +WFK+T+P+GIKY++ WL+N I
Sbjct: 85 CERRMKWHSEDEIRITTWRNRKPPERKMSQNTQDGYTRNWFKVTIPYGIKYDKAWLMNSI 144
Query: 134 QNECSVPFVPVEFHYENMHASFFVENASIAYALKNVSGKIWDEDNEKISIFVNPAGIPHF 193
Q+ CS F PV+FHY A FFV++AS A ALK+VS KI+D++N+KI IFVN + P+
Sbjct: 145 QSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDVSYKIYDDENQKICIFVNHSTAPYS 204
Query: 194 VHRELKSEKVEQIKLAMNQQCDVSQEALDIQRLPFYPDMVNRDTKMASNPRKCMAASLDV 253
V +LK ++E +KL MN++ +VSQ+ALD+Q L F PD++ RD + N R CMAA+L +
Sbjct: 205 VKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFDPDLMGRDIDIILNRRNCMAATLKI 264
Query: 254 HEENIPTVMS------------------------------------AGEMDKWKGIEPGE 277
E N P ++S A E+ K KG++ E
Sbjct: 265 IERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLKLEE 324
Query: 278 KCADRSPVCTTFSDTSSNINSILELFPKLLCLDGQQSPRATLCGTEAHKRLPTCKGSFFG 337
+ +P+C+TFSD S+ +++I + FPKLL LDG++ + ++ + + CK +F G
Sbjct: 325 LWLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRELSAPVIVDIDSSETMKPCKENFTG 384
Query: 338 SEMLKNLVLQFLQQYYLIYDSGDRQGLLSAYHDEACFSLSIPFNPEDSAPSSFCKFFKDS 397
SE LK+LVLQFLQQYY IYDSGDRQGLL AYHDEACFSL+IPF+P+DSAPSS CK+F+DS
Sbjct: 385 SETLKHLVLQFLQQYYSIYDSGDRQGLLGAYHDEACFSLAIPFDPKDSAPSSLCKYFEDS 444
Query: 398 RNIKILKDPYLRGELLKHTKLDIVDSLSALPKTQHDLSSFLVDMWYQTEWMLCFSVNGVF 457
RN+K LKDPYL+GELL+ TK DIVDSLSALPKTQHDLSS LVD+W QTE MLCFSVNGVF
Sbjct: 445 RNMKTLKDPYLKGELLRRTKRDIVDSLSALPKTQHDLSSILVDVWCQTERMLCFSVNGVF 504
Query: 458 KEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDKLFVRDTSHQGTQSALFTLVPTAFSSS 517
KEVEGQSQGSVLAFTRTFIATPGSSSSLCIVND+LFVRD S Q TQSA V T SSS
Sbjct: 505 KEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDELFVRDASPQETQSAFSIPVSTLSSSS 564
Query: 518 VPAFSQEQQKML 529
P+ SQEQQ+M+
Sbjct: 565 EPSLSQEQQEMV 576
>gi|15487670 nuclear RNA export factor 1 isoform 1 [Homo sapiens]
Length = 619
Score = 504 bits (1299), Expect = e-143
Identities = 270/533 (50%), Positives = 348/533 (65%), Gaps = 36/533 (6%)
Query: 33 RSEPVNPGMHSSSHQQQDGDAAMHGAHMDSPVRYTPYTISPYNRKGSFRKQDQTHVNMER 92
RS G+ SS ++ DGD AM A VRY PYT P R ++ +D+ HV + R
Sbjct: 39 RSGRGGSGIRSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRR 98
Query: 93 EQKPPERRMEGNMPDGTLGSWFKITVPFGIKYNEKWLLNLIQNECSVPFVPVEFHYENMH 152
++ PPER G DGT +WFKIT+P+G KY++ WLL++IQ++CSVPF P+EFHYEN
Sbjct: 99 DRAPPERGGAGTSQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTR 158
Query: 153 ASFFVENASIAYALKNVSGKIWDEDNEKISIFVNPAGIPHFVHRELKSEKVEQIKLAMNQ 212
A FFVE+AS A ALK V+ KI D +N +ISI +N + PH + ELK E+VEQ+KL M++
Sbjct: 159 AQFFVEDASTASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSK 218
Query: 213 QCDVSQEALDIQRLPFYPDMVNRDTKMASNPRKCMAASLDVHEENIPTVMSAG------- 265
+ D SQ+ALD++ L PD+V ++ + N R CMAA+L + EENIP ++S
Sbjct: 219 RYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLY 278
Query: 266 -----------------------------EMDKWKGIEPGEKCADRSPVCTTFSDTSSNI 296
E+DK KG++ E D + +C TF D S+ I
Sbjct: 279 RLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 338
Query: 297 NSILELFPKLLCLDGQQSPRATLCGTEAHKRLPTCKGSFFGSEMLKNLVLQFLQQYYLIY 356
++I E FPKLL LDG + P EA LP CKGS+FG+E LK+LVL FLQQYY IY
Sbjct: 339 SAIRERFPKLLRLDGHELPPPIAFDVEAPTTLPPCKGSYFGTENLKSLVLHFLQQYYAIY 398
Query: 357 DSGDRQGLLSAYHDEACFSLSIPFNPEDSAPSSFCKFFKDSRNIKILKDPYLRGELLKHT 416
DSGDRQGLL AYHD AC SLSIPF P++ A SS ++FKDSRN+K LKDP LR LLKHT
Sbjct: 399 DSGDRQGLLDAYHDGACCSLSIPFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHT 458
Query: 417 KLDIVDSLSALPKTQHDLSSFLVDMWYQTEWMLCFSVNGVFKEVEGQSQGSVLAFTRTFI 476
+L++V L+ LPKTQHD++SF+VD+ QT +LCFSVNGVFKEV+G+S+ S+ AFTRTFI
Sbjct: 459 RLNVVAFLNELPKTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFI 518
Query: 477 ATPGSSSSLCIVNDKLFVRDTSHQGTQSALFTLVPTAFSSSVPAFSQEQQKML 529
A P S+S LCIVND+LFVR+ S + Q A PT SS VP S EQQ+ML
Sbjct: 519 AVPASNSGLCIVNDELFVRNASSEEIQRAFAMPAPTPSSSPVPTLSPEQQEML 571
>gi|254039592 nuclear RNA export factor 5 [Homo sapiens]
Length = 365
Score = 292 bits (748), Expect = 5e-79
Identities = 164/382 (42%), Positives = 224/382 (58%), Gaps = 73/382 (19%)
Query: 101 MEGNMPDGTLGSWFKITVPFGIKYNEKWLLNLIQNECSVPFVPVEFHYENMHASFFVENA 160
M N D + WFK+T+P+GIKY++ WL+N IQ+ CSVPF PV+FHY A FFV+ A
Sbjct: 1 MRRNTQDENMRKWFKVTIPYGIKYDKAWLMNSIQSNCSVPFTPVDFHYIRNRACFFVQVA 60
Query: 161 SIAYALKNVSGKIWDEDNEKISIFVNPAGIPHFVHRELKSEKVEQIKLAMNQQCDVSQEA 220
S A ALK+VS KI+D++N+KI IFV+ P+ V +LK ++E +KL MN++ +VSQ+A
Sbjct: 61 SAASALKDVSYKIYDDENQKICIFVSHFTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQA 120
Query: 221 LDIQRLPFYPDMVNRDTKMASNPRKCMAASLDVHEENIPTVM------------------ 262
LD+Q L F PD++ RD + N R CMAA+L + E N P ++
Sbjct: 121 LDLQNLRFDPDLMGRDIDIILNRRNCMAATLKITERNFPELLSLNLCNNKLYQLDGLSDI 180
Query: 263 ------------------SAGEMDKWKGIEPGEKCADRSPVCTTFSDTSSNINSILELFP 304
SA E+ K KG++ E + +P+C+TFSD S+ +++I + FP
Sbjct: 181 TEKAPKVKTLNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFP 240
Query: 305 KLLCLDGQQSPRATLCGTEAHKRLPTCKGSFFGSEMLKNLVLQFLQQYYLIYDSGDRQGL 364
KLL LDG++ + ++ + + CK +F GSE LK+LVLQFLQQ
Sbjct: 241 KLLRLDGRELSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQ------------- 287
Query: 365 LSAYHDEACFSLSIPFNPEDSAPSSFCKFFKDSRNIKILKDPYLRGELLKHTKLD-IVDS 423
S+ CK+FKDSRNIKILKDPYL+ +LLKHTK VDS
Sbjct: 288 -----------------------SNLCKYFKDSRNIKILKDPYLQRKLLKHTKCPRNVDS 324
Query: 424 LSALPKTQHDLSSFLVDMWYQT 445
LSALP+TQHD +S LVDMWYQT
Sbjct: 325 LSALPETQHDFTSILVDMWYQT 346
>gi|125625324 nuclear RNA export factor 1 isoform 2 [Homo sapiens]
Length = 356
Score = 231 bits (590), Expect = 1e-60
Identities = 126/304 (41%), Positives = 177/304 (58%), Gaps = 36/304 (11%)
Query: 33 RSEPVNPGMHSSSHQQQDGDAAMHGAHMDSPVRYTPYTISPYNRKGSFRKQDQTHVNMER 92
RS G+ SS ++ DGD AM A VRY PYT P R ++ +D+ HV + R
Sbjct: 39 RSGRGGSGIRSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRR 98
Query: 93 EQKPPERRMEGNMPDGTLGSWFKITVPFGIKYNEKWLLNLIQNECSVPFVPVEFHYENMH 152
++ PPER G DGT +WFKIT+P+G KY++ WLL++IQ++CSVPF P+EFHYEN
Sbjct: 99 DRAPPERGGAGTSQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTR 158
Query: 153 ASFFVENASIAYALKNVSGKIWDEDNEKISIFVNPAGIPHFVHRELKSEKVEQIKLAMNQ 212
A FFVE+AS A ALK V+ KI D +N +ISI +N + PH + ELK E+VEQ+KL M++
Sbjct: 159 AQFFVEDASTASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSK 218
Query: 213 QCDVSQEALDIQRLPFYPDMVNRDTKMASNPRKCMAASLDVHEENIPTVMSAG------- 265
+ D SQ+ALD++ L PD+V ++ + N R CMAA+L + EENIP ++S
Sbjct: 219 RYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLY 278
Query: 266 -----------------------------EMDKWKGIEPGEKCADRSPVCTTFSDTSSNI 296
E+DK KG++ E D + +C TF D S+ I
Sbjct: 279 RLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 338
Query: 297 NSIL 300
S++
Sbjct: 339 RSVV 342
>gi|7019499 peroxisome proliferator-activated receptor gamma,
coactivator 1 alpha [Homo sapiens]
Length = 798
Score = 30.8 bits (68), Expect = 3.2
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 32 SRSEPVNPGMHSSSHQ--QQDGDAAMHGAHMDSPVRYTPYTISPYNRKGSFRK-QDQTHV 88
SRS +PG SSS + H H +SP+ + SPY+R+ + ++ H
Sbjct: 584 SRSRSRSPGSRSSSRSCYYYESSHYRHRTHRNSPLYVRSRSRSPYSRRPRYDSYEEYQHE 643
Query: 89 NMEREQ 94
++RE+
Sbjct: 644 RLKREE 649
>gi|194272202 actin binding LIM protein family, member 2 isoform 4
[Homo sapiens]
Length = 559
Score = 30.0 bits (66), Expect = 5.5
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 7 HTTGHTDQVVQRRARCWDIYQRRFS-SRSEPVNPGMHSSSHQQQDGDAAMHGAHMDSPVR 65
H++G +QR A D + RF S+S+P+ PG + Q++ + A GA D+
Sbjct: 434 HSSGTDRDPLQRMAG--DSFHSRFPYSKSDPL-PGHGKNGLDQRNANLAPCGADPDASWG 490
Query: 66 YTPYTISPY------NRKGSFRKQDQTHVNMEREQKPPE 98
Y I PY NR +D +ER P E
Sbjct: 491 MREYKIYPYDSLIVTNRIRVKLPKDVDRTRLERHLSPEE 529
>gi|194272198 actin binding LIM protein family, member 2 isoform 2
[Homo sapiens]
Length = 611
Score = 30.0 bits (66), Expect = 5.5
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 7 HTTGHTDQVVQRRARCWDIYQRRFS-SRSEPVNPGMHSSSHQQQDGDAAMHGAHMDSPVR 65
H++G +QR A D + RF S+S+P+ PG + Q++ + A GA D+
Sbjct: 486 HSSGTDRDPLQRMAG--DSFHSRFPYSKSDPL-PGHGKNGLDQRNANLAPCGADPDASWG 542
Query: 66 YTPYTISPY------NRKGSFRKQDQTHVNMEREQKPPE 98
Y I PY NR +D +ER P E
Sbjct: 543 MREYKIYPYDSLIVTNRIRVKLPKDVDRTRLERHLSPEE 581
>gi|194272196 actin binding LIM protein family, member 2 isoform 1
[Homo sapiens]
Length = 645
Score = 30.0 bits (66), Expect = 5.5
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 7 HTTGHTDQVVQRRARCWDIYQRRFS-SRSEPVNPGMHSSSHQQQDGDAAMHGAHMDSPVR 65
H++G +QR A D + RF S+S+P+ PG + Q++ + A GA D+
Sbjct: 520 HSSGTDRDPLQRMAG--DSFHSRFPYSKSDPL-PGHGKNGLDQRNANLAPCGADPDASWG 576
Query: 66 YTPYTISPY------NRKGSFRKQDQTHVNMEREQKPPE 98
Y I PY NR +D +ER P E
Sbjct: 577 MREYKIYPYDSLIVTNRIRVKLPKDVDRTRLERHLSPEE 615
>gi|94721324 non-SMC element 1 homolog [Homo sapiens]
Length = 266
Score = 29.6 bits (65), Expect = 7.2
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 247 MAASLDVHEENIPTVMSAGEMDKWKGIEPGEKCA---DRSPVCTTFSDTSSNINSILE 301
M DVH + +M+ G +++W C DR+ D +NINS+LE
Sbjct: 8 MGVMTDVHRRFLQLLMTHGVLEEWDVKRLQTHCYKVHDRNATVDKLEDFINNINSVLE 65
>gi|111548652 hypothetical protein LOC51057 isoform 2 [Homo sapiens]
Length = 746
Score = 29.3 bits (64), Expect = 9.4
Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 2/85 (2%)
Query: 18 RRARCWDIYQRRFSSRSEPVNPGMHSSS--HQQQDGDAAMHGAHMDSPVRYTPYTISPYN 75
RR CWD Y + SR+ P S HQ +H + + + I Y
Sbjct: 2 RREFCWDAYSKAAGSRASSPLPRQDRDSFCHQMSFCLTELHLWSLKNTLHIADRDIGIYQ 61
Query: 76 RKGSFRKQDQTHVNMEREQKPPERR 100
H N+E++QK E R
Sbjct: 62 YYDKKDPPATEHGNLEKKQKLAESR 86
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.132 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,364,480
Number of Sequences: 37866
Number of extensions: 957070
Number of successful extensions: 2060
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2041
Number of HSP's gapped (non-prelim): 20
length of query: 531
length of database: 18,247,518
effective HSP length: 107
effective length of query: 424
effective length of database: 14,195,856
effective search space: 6019042944
effective search space used: 6019042944
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.