Search of human proteins with 115387120

Search of human proteins with 115387120

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|115387120 transmembrane protein 216 [Homo sapiens]
         (87 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|115387120 transmembrane protein 216 [Homo sapiens]                 168   7e-43
gi|109689699 transmembrane protein 80 isoform 2 [Homo sapiens]         63   6e-11
gi|109689697 transmembrane protein 80 isoform 1 [Homo sapiens]         63   6e-11
gi|194097347 phosphoinositide-3-kinase, class 2 beta polypeptide...    28   1.6  
gi|83977452 discoidin domain receptor family, member 1 isoform c...    27   2.6  
gi|28827807 NLR family, pyrin domain containing 10 [Homo sapiens]      27   2.6  
gi|62955803 nucleoporin 188kDa [Homo sapiens]                          26   5.9  
gi|217416409 transmembrane protein 17 [Homo sapiens]                   26   7.7  
gi|24415404 MDN1, midasin homolog [Homo sapiens]                       26   7.7  

>gi|115387120 transmembrane protein 216 [Homo sapiens]
          Length = 87

 Score =  168 bits (426), Expect = 7e-43
 Identities = 87/87 (100%), Positives = 87/87 (100%)

Query: 1  MLLLYLGIEVIRLFFGTKGNLCQRKMPLSISVALTFPSAMMASYYLLLQTYVLRLEAIMN 60
          MLLLYLGIEVIRLFFGTKGNLCQRKMPLSISVALTFPSAMMASYYLLLQTYVLRLEAIMN
Sbjct: 1  MLLLYLGIEVIRLFFGTKGNLCQRKMPLSISVALTFPSAMMASYYLLLQTYVLRLEAIMN 60

Query: 61 GILLFFCGSELLLEVLTLAAFSSMDRI 87
          GILLFFCGSELLLEVLTLAAFSSMDRI
Sbjct: 61 GILLFFCGSELLLEVLTLAAFSSMDRI 87


>gi|109689699 transmembrane protein 80 isoform 2 [Homo sapiens]
          Length = 168

 Score = 62.8 bits (151), Expect = 6e-11
 Identities = 33/82 (40%), Positives = 56/82 (68%), Gaps = 1/82 (1%)

Query: 2   LLLYLGI-EVIRLFFGTKGNLCQRKMPLSISVALTFPSAMMASYYLLLQTYVLRLEAIMN 60
           LL  +GI E +RL+ GT+GNL + + PL+ S+ALT  +A++++++LL Q  VL  +  ++
Sbjct: 86  LLFLMGILEAVRLYLGTRGNLTEAERPLAASLALTAGTALLSAHFLLWQALVLWADWALS 145

Query: 61  GILLFFCGSELLLEVLTLAAFS 82
             LL   G E +L+V+ +AAF+
Sbjct: 146 ATLLALHGLEAVLQVVAIAAFT 167


>gi|109689697 transmembrane protein 80 isoform 1 [Homo sapiens]
          Length = 160

 Score = 62.8 bits (151), Expect = 6e-11
 Identities = 33/82 (40%), Positives = 56/82 (68%), Gaps = 1/82 (1%)

Query: 2   LLLYLGI-EVIRLFFGTKGNLCQRKMPLSISVALTFPSAMMASYYLLLQTYVLRLEAIMN 60
           LL  +GI E +RL+ GT+GNL + + PL+ S+ALT  +A++++++LL Q  VL  +  ++
Sbjct: 78  LLFLMGILEAVRLYLGTRGNLTEAERPLAASLALTAGTALLSAHFLLWQALVLWADWALS 137

Query: 61  GILLFFCGSELLLEVLTLAAFS 82
             LL   G E +L+V+ +AAF+
Sbjct: 138 ATLLALHGLEAVLQVVAIAAFT 159


>gi|194097347 phosphoinositide-3-kinase, class 2 beta polypeptide
            [Homo sapiens]
          Length = 1634

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 8/90 (8%)

Query: 3    LLYLGIEVIRLFFGTKGNLCQRKMPLSISVALTFPSAMMASYY----LLLQTYVLRLEAI 58
            +L  G+E ++ FF   G+    ++PLS S+ +        SY+    + L+     ++ +
Sbjct: 1018 ILRTGLEEVKQFFALNGSC---RLPLSPSLLVKGIVPRDCSYFNSNAVPLKLSFQNVDPL 1074

Query: 59   MNGI-LLFFCGSELLLEVLTLAAFSSMDRI 87
               I ++F CG +L  ++LTL     M +I
Sbjct: 1075 GENIRVIFKCGDDLRQDMLTLQMIRIMSKI 1104


>gi|83977452 discoidin domain receptor family, member 1 isoform c
           [Homo sapiens]
          Length = 919

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 20  NLCQRKMPLSISVALTFPSAMMASYYLLLQTYVLRLEAIMNGILLFFCGSELLLEV 75
           +LC+   P  + V+L FP  +   + LL+   +LR +A  N     F  ++ L EV
Sbjct: 625 HLCEVDSPQDL-VSLDFPLNVRKGHPLLVAVKILRPDATKNASFSLFSRNDFLKEV 679


>gi|28827807 NLR family, pyrin domain containing 10 [Homo sapiens]
          Length = 655

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 15/53 (28%), Positives = 24/53 (45%)

Query: 16  GTKGNLCQRKMPLSISVALTFPSAMMASYYLLLQTYVLRLEAIMNGILLFFCG 68
           GT      RKM L  +    +P      +Y+  +  VL LE+ +  +L + CG
Sbjct: 176 GTGKTTLARKMVLDWATGTLYPGRFDYVFYVSCKEVVLLLESKLEQLLFWCCG 228


>gi|62955803 nucleoporin 188kDa [Homo sapiens]
          Length = 1749

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 27  PLSISVALTFPSAMMASYYLLLQTYVLRLEAIMNGILLFFCGSELLLEVLTLA 79
           PL     L  P   +    L  + Y++R E   +   LF C  E+LL V++ A
Sbjct: 504 PLGGQTNLRIPQGTVGQVMLDDRAYLVRWEYSYSSWTLFTCEIEMLLHVVSTA 556


>gi|217416409 transmembrane protein 17 [Homo sapiens]
          Length = 198

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 8/83 (9%)

Query: 1   MLLLYLGIEVIRLFFGTKGNLCQRKMP-----LSISVALTFPSAMMASYYLLLQTYVLRL 55
           +++L   IE IRL+ G  GNL Q K+P       +S+ L  P  +   +   L    L L
Sbjct: 83  VIILITLIEAIRLYLGYVGNL-QEKVPELAGFWLLSLLLQLPLILFLLFNEGLTN--LPL 139

Query: 56  EAIMNGILLFFCGSELLLEVLTL 78
           E  ++ I   F   +++   LTL
Sbjct: 140 EKAIHIIFTLFLAFQVVAAFLTL 162


>gi|24415404 MDN1, midasin homolog [Homo sapiens]
          Length = 5596

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 1/82 (1%)

Query: 6    LGIEVIRLFFGTKGN-LCQRKMPLSISVALTFPSAMMASYYLLLQTYVLRLEAIMNGILL 64
            L ++V+    G  GN +C   + L      T   +  +S   L+QT +L ++ +  G+ L
Sbjct: 2324 LDLKVLLHSLGLVGNSVCDILLALHTETRSTVVGSPTSSVSTLIQTAILIVQYLQRGLSL 2383

Query: 65   FFCGSELLLEVLTLAAFSSMDR 86
                SE   EV   +  S  +R
Sbjct: 2384 DRAFSEACWEVYVCSQHSPANR 2405


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.334    0.146    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,427,947
Number of Sequences: 37866
Number of extensions: 67469
Number of successful extensions: 243
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 238
Number of HSP's gapped (non-prelim): 9
length of query: 87
length of database: 18,247,518
effective HSP length: 59
effective length of query: 28
effective length of database: 16,013,424
effective search space: 448375872
effective search space used: 448375872
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.