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Search of human proteins with 223890243
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|223890243 ribosomal protein L10 [Homo sapiens]
(214 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|223890243 ribosomal protein L10 [Homo sapiens] 448 e-126
gi|18152783 ribosomal protein L10-like protein [Homo sapiens] 429 e-121
gi|169162466 PREDICTED: similar to hCG1644589 [Homo sapiens] 177 5e-45
gi|169162197 PREDICTED: similar to hCG1644589 [Homo sapiens] 177 5e-45
gi|169161235 PREDICTED: hypothetical protein LOC390998 [Homo sap... 177 5e-45
gi|169173188 PREDICTED: similar to hCG1644362 [Homo sapiens] 130 6e-31
gi|239749350 PREDICTED: similar to hCG1644362 [Homo sapiens] 130 6e-31
gi|239743486 PREDICTED: hypothetical protein LOC645960 [Homo sap... 130 6e-31
gi|239754860 PREDICTED: similar to ribosomal protein 10 [Homo sa... 121 4e-28
gi|239749401 PREDICTED: hypothetical protein XP_002347030 [Homo ... 121 4e-28
gi|239743536 PREDICTED: hypothetical protein XP_002342871 [Homo ... 121 4e-28
gi|239756779 PREDICTED: similar to hCG1643102 [Homo sapiens] 96 3e-20
gi|239751260 PREDICTED: hypothetical protein XP_002347772 [Homo ... 96 3e-20
gi|239745753 PREDICTED: hypothetical protein XP_002343545 [Homo ... 96 3e-20
gi|30089948 protein phosphatase 1E [Homo sapiens] 28 7.6
>gi|223890243 ribosomal protein L10 [Homo sapiens]
Length = 214
Score = 448 bits (1153), Expect = e-126
Identities = 214/214 (100%), Positives = 214/214 (100%)
Query: 1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL 60
MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
Sbjct: 1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL 60
Query: 61 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120
SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120
Query: 121 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE 180
KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
Sbjct: 121 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE 180
Query: 181 FEDMVAEKRLIPDGCGVKYIPNRGPLDKWRALHS 214
FEDMVAEKRLIPDGCGVKYIPNRGPLDKWRALHS
Sbjct: 181 FEDMVAEKRLIPDGCGVKYIPNRGPLDKWRALHS 214
>gi|18152783 ribosomal protein L10-like protein [Homo sapiens]
Length = 214
Score = 429 bits (1104), Expect = e-121
Identities = 204/214 (95%), Positives = 210/214 (98%)
Query: 1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL 60
MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPL GHMVSDEYEQL
Sbjct: 1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLGGHMVSDEYEQL 60
Query: 61 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120
SSEALEAARICANKYMVKSCG+DGFH+RVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120
Query: 121 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE 180
KPQGTVARVHIGQVIMSIRTKLQN+EHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
Sbjct: 121 KPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE 180
Query: 181 FEDMVAEKRLIPDGCGVKYIPNRGPLDKWRALHS 214
FEDMVA+K LIPDGCGVKY+P+ GPLDKWR LHS
Sbjct: 181 FEDMVAKKCLIPDGCGVKYVPSHGPLDKWRVLHS 214
>gi|169162466 PREDICTED: similar to hCG1644589 [Homo sapiens]
Length = 150
Score = 177 bits (450), Expect = 5e-45
Identities = 85/105 (80%), Positives = 93/105 (88%)
Query: 110 RLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISK 169
RLQTGM+ AFGKPQGTVARVHIGQVIM I TKLQNKEHVI AL R FKFPG QK+HISK
Sbjct: 46 RLQTGMQVAFGKPQGTVARVHIGQVIMFIHTKLQNKEHVIGALHRVTFKFPGHQKVHISK 105
Query: 170 KWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPLDKWRALHS 214
KWGFTKFNADEFE +VAEK+L PDGCGVK IP+ GPL+KW+AL+S
Sbjct: 106 KWGFTKFNADEFEYVVAEKQLSPDGCGVKSIPSHGPLEKWQALYS 150
>gi|169162197 PREDICTED: similar to hCG1644589 [Homo sapiens]
Length = 150
Score = 177 bits (450), Expect = 5e-45
Identities = 85/105 (80%), Positives = 93/105 (88%)
Query: 110 RLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISK 169
RLQTGM+ AFGKPQGTVARVHIGQVIM I TKLQNKEHVI AL R FKFPG QK+HISK
Sbjct: 46 RLQTGMQVAFGKPQGTVARVHIGQVIMFIHTKLQNKEHVIGALHRVTFKFPGHQKVHISK 105
Query: 170 KWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPLDKWRALHS 214
KWGFTKFNADEFE +VAEK+L PDGCGVK IP+ GPL+KW+AL+S
Sbjct: 106 KWGFTKFNADEFEYVVAEKQLSPDGCGVKSIPSHGPLEKWQALYS 150
>gi|169161235 PREDICTED: hypothetical protein LOC390998 [Homo
sapiens]
Length = 150
Score = 177 bits (450), Expect = 5e-45
Identities = 85/105 (80%), Positives = 93/105 (88%)
Query: 110 RLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISK 169
RLQTGM+ AFGKPQGTVARVHIGQVIM I TKLQNKEHVI AL R FKFPG QK+HISK
Sbjct: 46 RLQTGMQVAFGKPQGTVARVHIGQVIMFIHTKLQNKEHVIGALHRVTFKFPGHQKVHISK 105
Query: 170 KWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPLDKWRALHS 214
KWGFTKFNADEFE +VAEK+L PDGCGVK IP+ GPL+KW+AL+S
Sbjct: 106 KWGFTKFNADEFEYVVAEKQLSPDGCGVKSIPSHGPLEKWQALYS 150
>gi|169173188 PREDICTED: similar to hCG1644362 [Homo sapiens]
Length = 226
Score = 130 bits (328), Expect = 6e-31
Identities = 65/87 (74%), Positives = 71/87 (81%)
Query: 115 MRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFT 174
+RGAF KPQG VARVHIGQVIMSI TKLQNKEHVIEAL +A FKFPGRQ IH S+KW FT
Sbjct: 28 IRGAFEKPQGAVARVHIGQVIMSICTKLQNKEHVIEALCKANFKFPGRQNIHFSEKWDFT 87
Query: 175 KFNADEFEDMVAEKRLIPDGCGVKYIP 201
KF+ DEFEDM+AEK+LIP G P
Sbjct: 88 KFSVDEFEDMMAEKQLIPITVGSSIPP 114
>gi|239749350 PREDICTED: similar to hCG1644362 [Homo sapiens]
Length = 226
Score = 130 bits (328), Expect = 6e-31
Identities = 65/87 (74%), Positives = 71/87 (81%)
Query: 115 MRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFT 174
+RGAF KPQG VARVHIGQVIMSI TKLQNKEHVIEAL +A FKFPGRQ IH S+KW FT
Sbjct: 28 IRGAFEKPQGAVARVHIGQVIMSICTKLQNKEHVIEALCKANFKFPGRQNIHFSEKWDFT 87
Query: 175 KFNADEFEDMVAEKRLIPDGCGVKYIP 201
KF+ DEFEDM+AEK+LIP G P
Sbjct: 88 KFSVDEFEDMMAEKQLIPITVGSSIPP 114
>gi|239743486 PREDICTED: hypothetical protein LOC645960 [Homo
sapiens]
Length = 226
Score = 130 bits (328), Expect = 6e-31
Identities = 65/87 (74%), Positives = 71/87 (81%)
Query: 115 MRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFT 174
+RGAF KPQG VARVHIGQVIMSI TKLQNKEHVIEAL +A FKFPGRQ IH S+KW FT
Sbjct: 28 IRGAFEKPQGAVARVHIGQVIMSICTKLQNKEHVIEALCKANFKFPGRQNIHFSEKWDFT 87
Query: 175 KFNADEFEDMVAEKRLIPDGCGVKYIP 201
KF+ DEFEDM+AEK+LIP G P
Sbjct: 88 KFSVDEFEDMMAEKQLIPITVGSSIPP 114
>gi|239754860 PREDICTED: similar to ribosomal protein 10 [Homo
sapiens]
Length = 281
Score = 121 bits (304), Expect = 4e-28
Identities = 61/71 (85%), Positives = 64/71 (90%), Gaps = 1/71 (1%)
Query: 110 RLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISK 169
RL+TG++GAFGKPQGTVARVHIGQV SI TKLQNKEHVIEA RAKFKFPG QKIHISK
Sbjct: 212 RLETGIQGAFGKPQGTVARVHIGQV-KSICTKLQNKEHVIEAPCRAKFKFPGHQKIHISK 270
Query: 170 KWGFTKFNADE 180
KWGFTKFN DE
Sbjct: 271 KWGFTKFNVDE 281
>gi|239749401 PREDICTED: hypothetical protein XP_002347030 [Homo
sapiens]
Length = 158
Score = 121 bits (304), Expect = 4e-28
Identities = 61/71 (85%), Positives = 64/71 (90%), Gaps = 1/71 (1%)
Query: 110 RLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISK 169
RL+TG++GAFGKPQGTVARVHIGQV SI TKLQNKEHVIEA RAKFKFPG QKIHISK
Sbjct: 89 RLETGIQGAFGKPQGTVARVHIGQV-KSICTKLQNKEHVIEAPCRAKFKFPGHQKIHISK 147
Query: 170 KWGFTKFNADE 180
KWGFTKFN DE
Sbjct: 148 KWGFTKFNVDE 158
>gi|239743536 PREDICTED: hypothetical protein XP_002342871 [Homo
sapiens]
Length = 158
Score = 121 bits (304), Expect = 4e-28
Identities = 61/71 (85%), Positives = 64/71 (90%), Gaps = 1/71 (1%)
Query: 110 RLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISK 169
RL+TG++GAFGKPQGTVARVHIGQV SI TKLQNKEHVIEA RAKFKFPG QKIHISK
Sbjct: 89 RLETGIQGAFGKPQGTVARVHIGQV-KSICTKLQNKEHVIEAPCRAKFKFPGHQKIHISK 147
Query: 170 KWGFTKFNADE 180
KWGFTKFN DE
Sbjct: 148 KWGFTKFNVDE 158
>gi|239756779 PREDICTED: similar to hCG1643102 [Homo sapiens]
Length = 186
Score = 95.5 bits (236), Expect = 3e-20
Identities = 52/70 (74%), Positives = 55/70 (78%), Gaps = 3/70 (4%)
Query: 110 RLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISK 169
RLQT + GKPQGTVARVHIGQVIMS+RTKLQNK+ VIE L RAKFK G QKI ISK
Sbjct: 120 RLQTD---SLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISK 176
Query: 170 KWGFTKFNAD 179
KW FTKF D
Sbjct: 177 KWCFTKFKVD 186
>gi|239751260 PREDICTED: hypothetical protein XP_002347772 [Homo
sapiens]
Length = 180
Score = 95.5 bits (236), Expect = 3e-20
Identities = 52/70 (74%), Positives = 55/70 (78%), Gaps = 3/70 (4%)
Query: 110 RLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISK 169
RLQT + GKPQGTVARVHIGQVIMS+RTKLQNK+ VIE L RAKFK G QKI ISK
Sbjct: 114 RLQTD---SLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISK 170
Query: 170 KWGFTKFNAD 179
KW FTKF D
Sbjct: 171 KWCFTKFKVD 180
>gi|239745753 PREDICTED: hypothetical protein XP_002343545 [Homo
sapiens]
Length = 186
Score = 95.5 bits (236), Expect = 3e-20
Identities = 52/70 (74%), Positives = 55/70 (78%), Gaps = 3/70 (4%)
Query: 110 RLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISK 169
RLQT + GKPQGTVARVHIGQVIMS+RTKLQNK+ VIE L RAKFK G QKI ISK
Sbjct: 120 RLQTD---SLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISK 176
Query: 170 KWGFTKFNAD 179
KW FTKF D
Sbjct: 177 KWCFTKFKVD 186
>gi|30089948 protein phosphatase 1E [Homo sapiens]
Length = 755
Score = 27.7 bits (60), Expect = 7.6
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 141 KLQNKEHVIEALRRAKFKFPGRQ-------KIHISKKWGFTKFNADEFEDMVAEKRLIPD 193
++Q+ V L +FK PG + + H SKKW +FN + + A++
Sbjct: 641 RMQSLSPVCSGLENEQFKSPGNRVSRLSHLRHHYSKKWHRFRFNPKFYSFLSAQEPSHKI 700
Query: 194 GCGVKYIPNRGPLDKWRA 211
G + + G ++ R+
Sbjct: 701 GTSLSSLTGSGKRNRIRS 718
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.140 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,419,012
Number of Sequences: 37866
Number of extensions: 339684
Number of successful extensions: 774
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 757
Number of HSP's gapped (non-prelim): 15
length of query: 214
length of database: 18,247,518
effective HSP length: 98
effective length of query: 116
effective length of database: 14,536,650
effective search space: 1686251400
effective search space used: 1686251400
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.