Search of human proteins with 22212934

Search of human proteins with 22212934

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|22212934 sigma non-opioid intracellular receptor 1 isoform 2
[Homo sapiens]
         (192 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|22212934 sigma non-opioid intracellular receptor 1 isoform 2 ...   395   e-111
gi|5032117 sigma non-opioid intracellular receptor 1 isoform 1 [...   379   e-106
gi|8922911 radical S-adenosyl methionine domain containing 1 [Ho...    33   0.19 
gi|24431977 XK, Kell blood group complex subunit-related family,...    32   0.25 
gi|166795299 solute carrier family 2 (facilitated glucose transp...    30   1.6  
gi|31543140 Usher syndrome 1C binding protein 1 [Homo sapiens]         29   2.8  
gi|24496763 mucolipin 3 [Homo sapiens]                                 27   8.2  
gi|206725452 leukocyte receptor cluster (LRC) member 9 [Homo sap...    27   8.2  

>gi|22212934 sigma non-opioid intracellular receptor 1 isoform 2
           [Homo sapiens]
          Length = 192

 Score =  395 bits (1016), Expect = e-111
 Identities = 192/192 (100%), Positives = 192/192 (100%)

Query: 1   MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR 60
           MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR
Sbjct: 1   MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR 60

Query: 61  LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGET 120
           LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGET
Sbjct: 61  LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGET 120

Query: 121 VVHGPGEATAVEWGPNTWMVEYGRGVIPSTLAFALADTVFSTQDFLTLFYTLRSYARGLR 180
           VVHGPGEATAVEWGPNTWMVEYGRGVIPSTLAFALADTVFSTQDFLTLFYTLRSYARGLR
Sbjct: 121 VVHGPGEATAVEWGPNTWMVEYGRGVIPSTLAFALADTVFSTQDFLTLFYTLRSYARGLR 180

Query: 181 LELTTYLFGQDP 192
           LELTTYLFGQDP
Sbjct: 181 LELTTYLFGQDP 192


>gi|5032117 sigma non-opioid intracellular receptor 1 isoform 1
           [Homo sapiens]
          Length = 223

 Score =  379 bits (974), Expect = e-106
 Identities = 192/223 (86%), Positives = 192/223 (86%), Gaps = 31/223 (13%)

Query: 1   MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR 60
           MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR
Sbjct: 1   MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR 60

Query: 61  LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHS--- 117
           LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHS   
Sbjct: 61  LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY 120

Query: 118 ----------------------------GETVVHGPGEATAVEWGPNTWMVEYGRGVIPS 149
                                       GETVVHGPGEATAVEWGPNTWMVEYGRGVIPS
Sbjct: 121 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS 180

Query: 150 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP 192
           TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP
Sbjct: 181 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP 223


>gi|8922911 radical S-adenosyl methionine domain containing 1 [Homo
           sapiens]
          Length = 442

 Score = 32.7 bits (73), Expect = 0.19
 Identities = 38/126 (30%), Positives = 51/126 (40%), Gaps = 20/126 (15%)

Query: 28  LWLGTQSFVFQREEIAQLARQYAGLDHELAFSRLIVELRRLHPGHVLPDEELQWVFVNAG 87
           L +G QS      E+  L R ++  D      R + E RRL PG V  D  L       G
Sbjct: 153 LSIGLQSL--DDTELRLLGRTHSACDA----LRTLAEARRLFPGRVSVDLMLGLPAQQVG 206

Query: 88  GWMGAM------CLLHASLSEYVLLFGTALGSRGHSGETVVHGPGEATAVEWGPNTWMVE 141
            W+G +      C  H SL +  L  GTAL ++   G   +  P    A E      M +
Sbjct: 207 PWLGQLQELLHHCDDHLSLYQLSLERGTALFAQVQRG--ALPAPDPELAAE------MYQ 258

Query: 142 YGRGVI 147
            GR V+
Sbjct: 259 RGRAVL 264


>gi|24431977 XK, Kell blood group complex subunit-related family,
          member 8 [Homo sapiens]
          Length = 395

 Score = 32.3 bits (72), Expect = 0.25
 Identities = 17/34 (50%), Positives = 25/34 (73%), Gaps = 4/34 (11%)

Query: 1  MQWAVGRRWAWAALLLA---VAAVLTQVV-WLWL 30
          +Q+A+G R+ WAAL+LA   +A+V  Q+  WLWL
Sbjct: 35 VQYALGGRYLWAALVLALLGLASVALQLFSWLWL 68


>gi|166795299 solute carrier family 2 (facilitated glucose
           transporter), member 1 [Homo sapiens]
          Length = 492

 Score = 29.6 bits (65), Expect = 1.6
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 108 GTALGSRGHSGETVVHGPGEATAVEWGPNTWMVEYGRGVIPSTLA--FALADTVFSTQDF 165
           G  LGS      T V    +    E+   TW+  YG  ++P+TL   ++L+  +FS    
Sbjct: 18  GAVLGSLQFGYNTGVINAPQKVIEEFYNQTWVHRYGESILPTTLTTLWSLSVAIFSVGGM 77

Query: 166 LTLF 169
           +  F
Sbjct: 78  IGSF 81


>gi|31543140 Usher syndrome 1C binding protein 1 [Homo sapiens]
          Length = 703

 Score = 28.9 bits (63), Expect = 2.8
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 5   VGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLAR----QYAGLDHEL--AF 58
           VGR W    L   +AA LT+ + L    QS   + E++AQ  R    Q A L+ +L  A 
Sbjct: 581 VGRAWDPEKLAQELAASLTRTLDLQEQLQSLRRELEQVAQKGRARRSQSAELNRDLCKAH 640

Query: 59  SRLIVELRRLH 69
           S L++  R  H
Sbjct: 641 SALVLAFRGAH 651


>gi|24496763 mucolipin 3 [Homo sapiens]
          Length = 553

 Score = 27.3 bits (59), Expect = 8.2
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 3  WAVGRR-WAWAALLLAVAAVLTQVVWLWLGTQSFVFQREE 41
          WA GR+ W  A  +L +A V  Q+V   L  Q  V  +EE
Sbjct: 54 WARGRKPWKLAIQILKIAMVTIQLVLFGLSNQMVVAFKEE 93


>gi|206725452 leukocyte receptor cluster (LRC) member 9 [Homo
           sapiens]
          Length = 501

 Score = 27.3 bits (59), Expect = 8.2
 Identities = 12/30 (40%), Positives = 13/30 (43%)

Query: 109 TALGSRGHSGETVVHGPGEATAVEWGPNTW 138
           T LG +      V  G  E T  EWGP  W
Sbjct: 273 TLLGGKEAQALGVPGGSAETTEAEWGPAAW 302


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.138    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,335,196
Number of Sequences: 37866
Number of extensions: 303706
Number of successful extensions: 870
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 864
Number of HSP's gapped (non-prelim): 9
length of query: 192
length of database: 18,247,518
effective HSP length: 97
effective length of query: 95
effective length of database: 14,574,516
effective search space: 1384579020
effective search space used: 1384579020
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.