Search of human proteins with 217272839

Search of human proteins with 217272839

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|217272839 choline dehydrogenase [Homo sapiens]
         (594 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|217272839 choline dehydrogenase [Homo sapiens]                    1225   0.0  
gi|32967305 coenzyme Q6 homolog isoform a [Homo sapiens]               33   0.74 
gi|223941923 OTU domain containing 1 [Homo sapiens]                    33   0.97 
gi|24797151 dimethylglycine dehydrogenase precursor [Homo sapiens]     30   4.8  
gi|239757861 PREDICTED: similar to armadillo repeat containing, ...    30   6.3  
gi|50301238 glutathione reductase [Homo sapiens]                       30   8.2  

>gi|217272839 choline dehydrogenase [Homo sapiens]
          Length = 594

 Score = 1225 bits (3170), Expect = 0.0
 Identities = 594/594 (100%), Positives = 594/594 (100%)

Query: 1   MWCLLRGLGRPGALARGALGQQQSLGARALASAGSESRDEYSYVVVGAGSAGCVLAGRLT 60
           MWCLLRGLGRPGALARGALGQQQSLGARALASAGSESRDEYSYVVVGAGSAGCVLAGRLT
Sbjct: 1   MWCLLRGLGRPGALARGALGQQQSLGARALASAGSESRDEYSYVVVGAGSAGCVLAGRLT 60

Query: 61  EDPAERVLLLEAGPKDVLAGSKRLSWKIHMPAALVANLCDDRYNWCYHTEVQRGLDGRVL 120
           EDPAERVLLLEAGPKDVLAGSKRLSWKIHMPAALVANLCDDRYNWCYHTEVQRGLDGRVL
Sbjct: 61  EDPAERVLLLEAGPKDVLAGSKRLSWKIHMPAALVANLCDDRYNWCYHTEVQRGLDGRVL 120

Query: 121 YWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQGHELGASRY 180
           YWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQGHELGASRY
Sbjct: 121 YWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQGHELGASRY 180

Query: 181 RGADGPLRVSRGKTNHPLHCAFLEATQQAGYPLTEDMNGFQQEGFGWMDMTIHEGKRWSA 240
           RGADGPLRVSRGKTNHPLHCAFLEATQQAGYPLTEDMNGFQQEGFGWMDMTIHEGKRWSA
Sbjct: 181 RGADGPLRVSRGKTNHPLHCAFLEATQQAGYPLTEDMNGFQQEGFGWMDMTIHEGKRWSA 240

Query: 241 ACAYLHPALSRTNLKAEAETLVSRVLFEGTRAVGVEYVKNGQSHRAYASKEVILSGGAIN 300
           ACAYLHPALSRTNLKAEAETLVSRVLFEGTRAVGVEYVKNGQSHRAYASKEVILSGGAIN
Sbjct: 241 ACAYLHPALSRTNLKAEAETLVSRVLFEGTRAVGVEYVKNGQSHRAYASKEVILSGGAIN 300

Query: 301 SPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQQACTRPITLHSAQKPLR 360
           SPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQQACTRPITLHSAQKPLR
Sbjct: 301 SPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQQACTRPITLHSAQKPLR 360

Query: 361 KVCIGLEWLWKFTGEGATAHLETGGFIRSQPGVPHPDIQFHFLPSQVIDHGRVPTQQEAY 420
           KVCIGLEWLWKFTGEGATAHLETGGFIRSQPGVPHPDIQFHFLPSQVIDHGRVPTQQEAY
Sbjct: 361 KVCIGLEWLWKFTGEGATAHLETGGFIRSQPGVPHPDIQFHFLPSQVIDHGRVPTQQEAY 420

Query: 421 QVHVGPMRGTSVGWLKLRSANPQDHPVIQPNYLSTETDIEDFRLCVKLTREIFAQEALAP 480
           QVHVGPMRGTSVGWLKLRSANPQDHPVIQPNYLSTETDIEDFRLCVKLTREIFAQEALAP
Sbjct: 421 QVHVGPMRGTSVGWLKLRSANPQDHPVIQPNYLSTETDIEDFRLCVKLTREIFAQEALAP 480

Query: 481 FRGKELQPGSHIQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENL 540
           FRGKELQPGSHIQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENL
Sbjct: 481 FRGKELQPGSHIQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENL 540

Query: 541 RVVDASIMPSMVSGNLNAPTIMIAEKAADIIKGQPALWDKDVPVYKPRTLATQR 594
           RVVDASIMPSMVSGNLNAPTIMIAEKAADIIKGQPALWDKDVPVYKPRTLATQR
Sbjct: 541 RVVDASIMPSMVSGNLNAPTIMIAEKAADIIKGQPALWDKDVPVYKPRTLATQR 594


>gi|32967305 coenzyme Q6 homolog isoform a [Homo sapiens]
          Length = 468

 Score = 33.1 bits (74), Expect = 0.74
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 33 AGSESRDEYSYVVVGAGSAGCVLAGRLTED---PAERVLLLEAGPKDVL 78
          +G+ +   Y  VV G G  G  +A  L  D     +++LLLEAGPK VL
Sbjct: 28 SGASTDTVYDVVVSGGGLVGAAMACALGYDIHFHDKKILLLEAGPKKVL 76


>gi|223941923 OTU domain containing 1 [Homo sapiens]
          Length = 481

 Score = 32.7 bits (73), Expect = 0.97
 Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 57  GRLTEDPAERVLLLEAGPKDVLAGSKRLSWKI--HMPAALVANLCDDRY-NWCYHTEVQR 113
           GRL E P    ++   GP+D L  S  LSW    H  A    +  +  Y NWC  T+VQR
Sbjct: 398 GRL-ESPTVSTMIHYLGPEDSLRPSIWLSWLSNGHYDAVFDHSYPNPEYDNWCKQTQVQR 456

Query: 114 GLD 116
             D
Sbjct: 457 KRD 459


>gi|24797151 dimethylglycine dehydrogenase precursor [Homo
          sapiens]
          Length = 866

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 7/83 (8%)

Query: 4  LLRGLGRPGALARGALGQQQSLGARA-----LASAGSESRDEYSYVVVGAGSAGCVLAGR 58
          LLRGL       +G+ G+ +S+  R        SA ++ +D    V++G G  G  LA  
Sbjct: 8  LLRGLLLRSCPLQGSPGRPRSVCGREGEEKPPLSAETQWKDRAETVIIGGGCVGVSLAYH 67

Query: 59 LTEDPAERVLLLEAGPKDVLAGS 81
          L +   + V+LLE    ++ AGS
Sbjct: 68 LAKAGMKDVVLLE--KSELTAGS 88


>gi|239757861 PREDICTED: similar to armadillo repeat containing,
           X-linked 4 [Homo sapiens]
          Length = 2382

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 7/76 (9%)

Query: 457 TDIEDFRLCVKLTREIFAQEALAPFRGKELQPGSHIQSDKEIDAFVRAKADSAYHPSCTC 516
           T +ED   C  ++R     +  A       QP   I +  + +A   AK D+  + +  C
Sbjct: 388 TGVEDMGNCKTMSRAESGADTRA-----SAQP--QIFAKTQTEAIPGAKIDAGGNTNAMC 440

Query: 517 KMGQPSDPTAVVDPQT 532
           K+G  +D  A + PQT
Sbjct: 441 KVGAGADVRACIQPQT 456


>gi|50301238 glutathione reductase [Homo sapiens]
          Length = 522

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 36/152 (23%), Positives = 58/152 (38%), Gaps = 24/152 (15%)

Query: 4   LLRGLGRPGALARGALGQQQSLGARALASAGSESRDEYSYVVVGAGSAGCVLAGRLTEDP 63
           L R L R  A  +    Q     A A+AS        Y Y+V+G GS G   A R  E  
Sbjct: 36  LTRALSRAMACRQEPQPQGPPPAAGAVAS--------YDYLVIGGGSGGLASARRAAELG 87

Query: 64  AERVLL-----------LEAGPKDVLAGSKRLSWKIHMPAALVANLCDDRYNWCYHTEVQ 112
           A   ++           +   PK V+  +   S  +H  A      C+ ++NW    E +
Sbjct: 88  ARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKEKR 147

Query: 113 RGLDGRVLYWPRGRVWGGSSSLNAMVYVRGHA 144
                R+       ++  + + + +  +RGHA
Sbjct: 148 DAYVSRL-----NAIYQNNLTKSHIEIIRGHA 174


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.135    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,196,528
Number of Sequences: 37866
Number of extensions: 1149445
Number of successful extensions: 2292
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2288
Number of HSP's gapped (non-prelim): 9
length of query: 594
length of database: 18,247,518
effective HSP length: 108
effective length of query: 486
effective length of database: 14,157,990
effective search space: 6880783140
effective search space used: 6880783140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.