Search of human proteins with 214010229

Search of human proteins with 214010229

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|214010229 COX4 neighbor isoform 2 [Homo sapiens]
         (126 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|214010229 COX4 neighbor isoform 2 [Homo sapiens]                   262   4e-71
gi|5174615 COX4 neighbor isoform 1 [Homo sapiens]                     262   4e-71
gi|31542298 hypothetical protein LOC51016 [Homo sapiens]              106   4e-24
gi|226371655 zinc finger family member 674 isoform 2 [Homo sapiens]    28   2.4  
gi|89994742 zinc finger family member 674 isoform 1 [Homo sapiens]     28   2.4  
gi|25777608 NLR family member X1 isoform 1 [Homo sapiens]              27   5.4  
gi|25777610 NLR family member X1 isoform 2 [Homo sapiens]              27   5.4  
gi|24497513 homeobox A3 isoform a [Homo sapiens]                       26   9.2  
gi|13562112 homeobox A3 isoform a [Homo sapiens]                       26   9.2  

>gi|214010229 COX4 neighbor isoform 2 [Homo sapiens]
          Length = 126

 Score =  262 bits (670), Expect = 4e-71
 Identities = 126/126 (100%), Positives = 126/126 (100%)

Query: 1   MPGVKLTTQAYCKMVLHGAKYPHCAVNGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPL 60
           MPGVKLTTQAYCKMVLHGAKYPHCAVNGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPL
Sbjct: 1   MPGVKLTTQAYCKMVLHGAKYPHCAVNGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPL 60

Query: 61  FHGTLALAPMLEVALTLIDSWCKDHSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFS 120
           FHGTLALAPMLEVALTLIDSWCKDHSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFS
Sbjct: 61  FHGTLALAPMLEVALTLIDSWCKDHSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFS 120

Query: 121 DTALIM 126
           DTALIM
Sbjct: 121 DTALIM 126


>gi|5174615 COX4 neighbor isoform 1 [Homo sapiens]
          Length = 210

 Score =  262 bits (670), Expect = 4e-71
 Identities = 126/126 (100%), Positives = 126/126 (100%)

Query: 1   MPGVKLTTQAYCKMVLHGAKYPHCAVNGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPL 60
           MPGVKLTTQAYCKMVLHGAKYPHCAVNGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPL
Sbjct: 1   MPGVKLTTQAYCKMVLHGAKYPHCAVNGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPL 60

Query: 61  FHGTLALAPMLEVALTLIDSWCKDHSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFS 120
           FHGTLALAPMLEVALTLIDSWCKDHSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFS
Sbjct: 61  FHGTLALAPMLEVALTLIDSWCKDHSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFS 120

Query: 121 DTALIM 126
           DTALIM
Sbjct: 121 DTALIM 126


>gi|31542298 hypothetical protein LOC51016 [Homo sapiens]
          Length = 208

 Score =  106 bits (265), Expect = 4e-24
 Identities = 58/126 (46%), Positives = 70/126 (55%), Gaps = 11/126 (8%)

Query: 1   MPGVKLTTQAYCKMVLHGAKYPHCAVNGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPL 60
           M  V+++  AY KM LH A+YPH AVNGL +A   +                   DC+PL
Sbjct: 1   MGEVEISALAYVKMCLHAARYPHAAVNGLFLAPAPR-----------SGECLCLTDCVPL 49

Query: 61  FHGTLALAPMLEVALTLIDSWCKDHSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFS 120
           FH  LAL+ MLEVAL  +D W      V+AGYY AN  V D SP  +A K+A RIAE F 
Sbjct: 50  FHSHLALSVMLEVALNQVDVWGAQAGLVVAGYYHANAAVNDQSPGPLALKIAGRIAEFFP 109

Query: 121 DTALIM 126
           D  LIM
Sbjct: 110 DAVLIM 115


>gi|226371655 zinc finger family member 674 isoform 2 [Homo sapiens]
          Length = 575

 Score = 27.7 bits (60), Expect = 2.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 3   GVKLTTQAYCKMVLHGAKYPHCAVNGLLVAEKQKPRK 39
           G+K TT +     +H ++ P C+ +G    EK  P K
Sbjct: 332 GIKCTTSSLIYQRIHTSEKPQCSEHGKASDEKPSPTK 368


>gi|89994742 zinc finger family member 674 isoform 1 [Homo sapiens]
          Length = 581

 Score = 27.7 bits (60), Expect = 2.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 3   GVKLTTQAYCKMVLHGAKYPHCAVNGLLVAEKQKPRK 39
           G+K TT +     +H ++ P C+ +G    EK  P K
Sbjct: 338 GIKCTTSSLIYQRIHTSEKPQCSEHGKASDEKPSPTK 374


>gi|25777608 NLR family member X1 isoform 1 [Homo sapiens]
          Length = 975

 Score = 26.6 bits (57), Expect = 5.4
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 30  LVAEKQKPRKEHLPLGGPGAHHTLFV 55
           LVA++  P KE LPL      H LFV
Sbjct: 215 LVAQRYTPLKEVLPLMAAAGSHLLFV 240


>gi|25777610 NLR family member X1 isoform 2 [Homo sapiens]
          Length = 921

 Score = 26.6 bits (57), Expect = 5.4
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 30  LVAEKQKPRKEHLPLGGPGAHHTLFV 55
           LVA++  P KE LPL      H LFV
Sbjct: 215 LVAQRYTPLKEVLPLMAAAGSHLLFV 240


>gi|24497513 homeobox A3 isoform a [Homo sapiens]
          Length = 443

 Score = 25.8 bits (55), Expect = 9.2
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 11 YCKMVLHGAKYPHCAVNGLLVAEKQKPRKEHLPLGGPGAHH 51
          Y    ++G  YP+ A NG      Q+P      LG  G +H
Sbjct: 7  YDSSAIYGG-YPYQAANGFAYNANQQPYPASAALGADGEYH 46


>gi|13562112 homeobox A3 isoform a [Homo sapiens]
          Length = 443

 Score = 25.8 bits (55), Expect = 9.2
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 11 YCKMVLHGAKYPHCAVNGLLVAEKQKPRKEHLPLGGPGAHH 51
          Y    ++G  YP+ A NG      Q+P      LG  G +H
Sbjct: 7  YDSSAIYGG-YPYQAANGFAYNANQQPYPASAALGADGEYH 46


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.136    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,936,512
Number of Sequences: 37866
Number of extensions: 199292
Number of successful extensions: 349
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 341
Number of HSP's gapped (non-prelim): 9
length of query: 126
length of database: 18,247,518
effective HSP length: 90
effective length of query: 36
effective length of database: 14,839,578
effective search space: 534224808
effective search space used: 534224808
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.