Search of human proteins with 21361933

Search of human proteins with 21361933

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|21361933 integrin alpha FG-GAP repeat containing 1 [Homo
sapiens]
         (612 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|21361933 integrin alpha FG-GAP repeat containing 1 [Homo sapi...  1249   0.0  
gi|4557351 butyrylcholinesterase precursor [Homo sapiens]              33   0.77 
gi|23397560 zinc finger protein 549 [Homo sapiens]                     31   2.9  
gi|13569922 NUAK family, SNF1-like kinase, 2 [Homo sapiens]            31   3.8  
gi|109638751 ubiquitin specific protease 6 [Homo sapiens]              30   5.0  
gi|54792129 discoidin, CUB and LCCL domain containing 2 [Homo sa...    30   8.5  

>gi|21361933 integrin alpha FG-GAP repeat containing 1 [Homo
           sapiens]
          Length = 612

 Score = 1249 bits (3232), Expect = 0.0
 Identities = 612/612 (100%), Positives = 612/612 (100%)

Query: 1   MAAAGRLPSSWALFSPLLAGLALLGVGPVPARALHNVTAELFGAEAWGTLAAFGDLNSDK 60
           MAAAGRLPSSWALFSPLLAGLALLGVGPVPARALHNVTAELFGAEAWGTLAAFGDLNSDK
Sbjct: 1   MAAAGRLPSSWALFSPLLAGLALLGVGPVPARALHNVTAELFGAEAWGTLAAFGDLNSDK 60

Query: 61  QTDLFVLRERNDLIVFLADQNAPYFKPKVKVSFKNHSALITSVVPGDYDGDSQMDVLLTY 120
           QTDLFVLRERNDLIVFLADQNAPYFKPKVKVSFKNHSALITSVVPGDYDGDSQMDVLLTY
Sbjct: 61  QTDLFVLRERNDLIVFLADQNAPYFKPKVKVSFKNHSALITSVVPGDYDGDSQMDVLLTY 120

Query: 121 LPKNYAKSELGAVIFWGQNQTLDPNNMTILNRTFQDEPLIMDFNGDLIPDIFGITNESNQ 180
           LPKNYAKSELGAVIFWGQNQTLDPNNMTILNRTFQDEPLIMDFNGDLIPDIFGITNESNQ
Sbjct: 121 LPKNYAKSELGAVIFWGQNQTLDPNNMTILNRTFQDEPLIMDFNGDLIPDIFGITNESNQ 180

Query: 181 PQILLGGNLSWHPALTTTSKMRIPHSHAFIDLTEDFTADLFLTTLNATTSTFQFEIWENL 240
           PQILLGGNLSWHPALTTTSKMRIPHSHAFIDLTEDFTADLFLTTLNATTSTFQFEIWENL
Sbjct: 181 PQILLGGNLSWHPALTTTSKMRIPHSHAFIDLTEDFTADLFLTTLNATTSTFQFEIWENL 240

Query: 241 DGNFSVSTILEKPQNMMVVGQSAFADFDGDGHMDHLLPGCEDKNCQKSTIYLVRSGMKQW 300
           DGNFSVSTILEKPQNMMVVGQSAFADFDGDGHMDHLLPGCEDKNCQKSTIYLVRSGMKQW
Sbjct: 241 DGNFSVSTILEKPQNMMVVGQSAFADFDGDGHMDHLLPGCEDKNCQKSTIYLVRSGMKQW 300

Query: 301 VPVLQDFSNKGTLWGFVPFVDEQQPTEIPIPITLHIGDYNMDGYPDALVILKNTSGSNQQ 360
           VPVLQDFSNKGTLWGFVPFVDEQQPTEIPIPITLHIGDYNMDGYPDALVILKNTSGSNQQ
Sbjct: 301 VPVLQDFSNKGTLWGFVPFVDEQQPTEIPIPITLHIGDYNMDGYPDALVILKNTSGSNQQ 360

Query: 361 AFLLENVPCNNASCEEARRMFKVYWELTDLNQIKDAMVATFFDIYEDGILDIVVLSKGYT 420
           AFLLENVPCNNASCEEARRMFKVYWELTDLNQIKDAMVATFFDIYEDGILDIVVLSKGYT
Sbjct: 361 AFLLENVPCNNASCEEARRMFKVYWELTDLNQIKDAMVATFFDIYEDGILDIVVLSKGYT 420

Query: 421 KNDFAIHTLKNNFEADAYFVKVIVLSGLCSNDCPRKITPFGVNQPGPYIMYTTVDANGYL 480
           KNDFAIHTLKNNFEADAYFVKVIVLSGLCSNDCPRKITPFGVNQPGPYIMYTTVDANGYL
Sbjct: 421 KNDFAIHTLKNNFEADAYFVKVIVLSGLCSNDCPRKITPFGVNQPGPYIMYTTVDANGYL 480

Query: 481 KNGSAGQLSQSAHLALQLPYNVLGLGRSANFLDHLYVGIPRPSGEKSIRKQEWTAIIPNS 540
           KNGSAGQLSQSAHLALQLPYNVLGLGRSANFLDHLYVGIPRPSGEKSIRKQEWTAIIPNS
Sbjct: 481 KNGSAGQLSQSAHLALQLPYNVLGLGRSANFLDHLYVGIPRPSGEKSIRKQEWTAIIPNS 540

Query: 541 QLIVIPYPHNVPRSWSAKLYLTPSNIVLLTAIALIGVCVFILAIIGILHWQEKKADDREK 600
           QLIVIPYPHNVPRSWSAKLYLTPSNIVLLTAIALIGVCVFILAIIGILHWQEKKADDREK
Sbjct: 541 QLIVIPYPHNVPRSWSAKLYLTPSNIVLLTAIALIGVCVFILAIIGILHWQEKKADDREK 600

Query: 601 RQEAHRFHFDAM 612
           RQEAHRFHFDAM
Sbjct: 601 RQEAHRFHFDAM 612


>gi|4557351 butyrylcholinesterase precursor [Homo sapiens]
          Length = 602

 Score = 33.1 bits (74), Expect = 0.77
 Identities = 24/108 (22%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 240 LDGNFSVSTILEKPQNMMVVGQSAFADF-------DGDGHMDHLLPGCEDKNCQKSTIYL 292
           +DG+F    + + P  ++ +GQ             +G   + +  PG    N    T   
Sbjct: 322 VDGDF----LTDMPDILLELGQFKKTQILVGVNKDEGTAFLVYGAPGFSKDNNSIITRKE 377

Query: 293 VRSGMKQWVPVLQDFSNKGTLWGFVPFVDEQQPTEIPIPITLHIGDYN 340
            + G+K + P + +F  +  L+ +  +VD+Q+P      +   +GDYN
Sbjct: 378 FQEGLKIFFPGVSEFGKESILFHYTDWVDDQRPENYREALGDVVGDYN 425


>gi|23397560 zinc finger protein 549 [Homo sapiens]
          Length = 627

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 18/47 (38%), Positives = 27/47 (57%)

Query: 494 LALQLPYNVLGLGRSANFLDHLYVGIPRPSGEKSIRKQEWTAIIPNS 540
           L  Q PY  +  G+  +F  +L     + SGEK IRK+E +A++ NS
Sbjct: 113 LPWQKPYTSVASGKWFSFGSNLQQHQNQDSGEKHIRKEESSALLLNS 159


>gi|13569922 NUAK family, SNF1-like kinase, 2 [Homo sapiens]
          Length = 628

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 13/144 (9%)

Query: 45  EAWGTLAAFGDLNSDKQTDLFVLRERNDLIVFLADQNAPYFKPKVKVSFKNHSALITSVV 104
           E+ G L A   +  DK  D   L      I  ++  N P+     +V F+N S ++  + 
Sbjct: 72  ESSGRLVAIKSIRKDKIKDEQDLMHIRREIEIMSSLNHPHIIAIHEV-FENSSKIVIVME 130

Query: 105 ---PGD-YDGDSQMDVLLTYLPKNYAKSELGAVIFWGQNQTLDPNNMTILNRTFQDEPLI 160
               GD YD  S+   L     +++ +  + AV +  QN+        +++R  + E ++
Sbjct: 131 YASRGDLYDYISERQQLSEREARHFFRQIVSAVHYCHQNR--------VVHRDLKLENIL 182

Query: 161 MDFNGDLIPDIFGITNESNQPQIL 184
           +D NG++    FG++N  +Q + L
Sbjct: 183 LDANGNIKIADFGLSNLYHQGKFL 206


>gi|109638751 ubiquitin specific protease 6 [Homo sapiens]
          Length = 1406

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 20/87 (22%), Positives = 35/87 (40%)

Query: 432 NFEADAYFVKVIVLSGLCSNDCPRKITPFGVNQPGPYIMYTTVDANGYLKNGSAGQLSQS 491
           NF  D   V++ V   LC+ + P   +P   + P      ++   NG     + G L + 
Sbjct: 774 NFPQDNQKVQLSVSGFLCAFEIPVPSSPISASSPTQIDFSSSPSTNGMFTLTTNGDLPKP 833

Query: 492 AHLALQLPYNVLGLGRSANFLDHLYVG 518
             +   +P  V+  G   NF + +  G
Sbjct: 834 IFIPNGMPNTVVPCGTEKNFTNGMVNG 860


>gi|54792129 discoidin, CUB and LCCL domain containing 2 [Homo
           sapiens]
          Length = 775

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 14/89 (15%)

Query: 506 GRSANFLDHLYVGIPRPSGEKSIRKQEWTAIIPNSQLIVIPYPHNVPRSWSAKLYLTPSN 565
           GR+  F   L    PR S E   + ++ TA        V P   NV +  +    L P  
Sbjct: 484 GRAPKFTQPLQ---PRSSNEFPAQTEQTTASPDIRNTTVTP---NVTKDVALAAVLVPVL 537

Query: 566 IVLLTAIALIGVCVFILAIIGILHWQEKK 594
           +++LT + LI VC +        HW+ +K
Sbjct: 538 VMVLTTLILILVCAW--------HWRNRK 558


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,673,829
Number of Sequences: 37866
Number of extensions: 1077252
Number of successful extensions: 1956
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1950
Number of HSP's gapped (non-prelim): 6
length of query: 612
length of database: 18,247,518
effective HSP length: 108
effective length of query: 504
effective length of database: 14,157,990
effective search space: 7135626960
effective search space used: 7135626960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.