Search of human proteins with 21361837

Search of human proteins with 21361837

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|21361837 chromosome 1 open reading frame 128 [Homo sapiens]
         (211 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|21361837 chromosome 1 open reading frame 128 [Homo sapiens]        441   e-124
gi|4759274 thioredoxin-like 1 [Homo sapiens]                           60   1e-09
gi|14165276 esophageal cancer related gene 4 protein [Homo sapiens]    32   0.51 
gi|215982794 myosin VA isoform 2 [Homo sapiens]                        28   5.7  
gi|215982791 myosin VA isoform 1 [Homo sapiens]                        28   5.7  
gi|20806097 nucleolar complex associated 3 homolog [Homo sapiens]      28   7.4  
gi|47519562 reticulon 4 isoform E [Homo sapiens]                       27   9.7  
gi|24431935 reticulon 4 isoform A [Homo sapiens]                       27   9.7  
gi|4506681 ribosomal protein S11 [Homo sapiens]                        27   9.7  
gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Ho...    27   9.7  
gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Ho...    27   9.7  
gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Ho...    27   9.7  

>gi|21361837 chromosome 1 open reading frame 128 [Homo sapiens]
          Length = 211

 Score =  441 bits (1133), Expect = e-124
 Identities = 211/211 (100%), Positives = 211/211 (100%)

Query: 1   MSHGHSHGGGGCRCAAEREEPPEQRGLAYGLYLRIDLERLQCLNESREGSGRGVFKPWEE 60
           MSHGHSHGGGGCRCAAEREEPPEQRGLAYGLYLRIDLERLQCLNESREGSGRGVFKPWEE
Sbjct: 1   MSHGHSHGGGGCRCAAEREEPPEQRGLAYGLYLRIDLERLQCLNESREGSGRGVFKPWEE 60

Query: 61  RTDRSKFVESDADEELLFNIPFTGNVKLKGIIIMGEDDDSHPSEMRLYKNIPQMSFDDTE 120
           RTDRSKFVESDADEELLFNIPFTGNVKLKGIIIMGEDDDSHPSEMRLYKNIPQMSFDDTE
Sbjct: 61  RTDRSKFVESDADEELLFNIPFTGNVKLKGIIIMGEDDDSHPSEMRLYKNIPQMSFDDTE 120

Query: 121 REPDQTFSLNRDLTGELEYATKISRFSNVYHLSIHISKNFGADTTKVFYIGLRGEWTELR 180
           REPDQTFSLNRDLTGELEYATKISRFSNVYHLSIHISKNFGADTTKVFYIGLRGEWTELR
Sbjct: 121 REPDQTFSLNRDLTGELEYATKISRFSNVYHLSIHISKNFGADTTKVFYIGLRGEWTELR 180

Query: 181 RHEVTICNYEASANPADHRVHQVTPQTHFIS 211
           RHEVTICNYEASANPADHRVHQVTPQTHFIS
Sbjct: 181 RHEVTICNYEASANPADHRVHQVTPQTHFIS 211


>gi|4759274 thioredoxin-like 1 [Homo sapiens]
          Length = 289

 Score = 60.5 bits (145), Expect = 1e-09
 Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 10/138 (7%)

Query: 41  QCLNESREGSGRGVFKPWEERTDRSKFVESDADEELLFNIPFTGNVKLKGIIIMGEDDDS 100
           +CLNES E       +        + F+ESD DE+LL  + F   VKL  +   G D+  
Sbjct: 136 ECLNESDEHGFDNCLRK------DTTFLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQ 189

Query: 101 HPSEMRLYKNIPQ-MSFDDTER-EPDQTFSLNR-DLTGELEYATKISRFSNVYHLSIHIS 157
            P  ++++ N+P+ M F++ ER EP Q   L   D+  +     +  +F NV  ++I + 
Sbjct: 190 GPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQ 249

Query: 158 KNFG-ADTTKVFYIGLRG 174
            N G  +TT++ Y    G
Sbjct: 250 SNQGEEETTRISYFTFIG 267


>gi|14165276 esophageal cancer related gene 4 protein [Homo sapiens]
          Length = 148

 Score = 31.6 bits (70), Expect = 0.51
 Identities = 16/48 (33%), Positives = 22/48 (45%)

Query: 98  DDSHPSEMRLYKNIPQMSFDDTEREPDQTFSLNRDLTGELEYATKISR 145
           D + P   + Y+    M FD+ + E D T+ LNRD  G   Y     R
Sbjct: 74  DRTRPEVQQWYQQFLYMGFDEAKFEDDITYWLNRDRNGHEYYGDYYQR 121


>gi|215982794 myosin VA isoform 2 [Homo sapiens]
          Length = 1828

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 14/128 (10%)

Query: 33   LRIDLERLQCL-NESREGSGR---------GVFKPWEERTDRSKFVESDADEELLFNIPF 82
            LR DLERLQ    E++  +GR          + K  E+     K +E  AD         
Sbjct: 964  LRSDLERLQLSEEEAKVATGRVLSLQEEIAKLRKDLEQTRSEKKCIEEHADRYKQETEQL 1023

Query: 83   TGNVKLKGIIIMGEDDDSHPSEMRLYKNIPQMSFDDTEREPDQTFSLNRDLTGE-LEYAT 141
              N+K +  ++  E +       R+ +   +M+    ++  ++T  L  DL  E L Y  
Sbjct: 1024 VSNLKEENTLLKQEKE---ALNHRIVQQAKEMTETMEKKLVEETKQLELDLNDERLRYQN 1080

Query: 142  KISRFSNV 149
             ++ FS +
Sbjct: 1081 LLNEFSRL 1088


>gi|215982791 myosin VA isoform 1 [Homo sapiens]
          Length = 1855

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 14/128 (10%)

Query: 33   LRIDLERLQCL-NESREGSGR---------GVFKPWEERTDRSKFVESDADEELLFNIPF 82
            LR DLERLQ    E++  +GR          + K  E+     K +E  AD         
Sbjct: 964  LRSDLERLQLSEEEAKVATGRVLSLQEEIAKLRKDLEQTRSEKKCIEEHADRYKQETEQL 1023

Query: 83   TGNVKLKGIIIMGEDDDSHPSEMRLYKNIPQMSFDDTEREPDQTFSLNRDLTGE-LEYAT 141
              N+K +  ++  E +       R+ +   +M+    ++  ++T  L  DL  E L Y  
Sbjct: 1024 VSNLKEENTLLKQEKE---ALNHRIVQQAKEMTETMEKKLVEETKQLELDLNDERLRYQN 1080

Query: 142  KISRFSNV 149
             ++ FS +
Sbjct: 1081 LLNEFSRL 1088


>gi|20806097 nucleolar complex associated 3 homolog [Homo sapiens]
          Length = 800

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 51  GRGVFKPWEERTDRSKFVESDADEELLFNIPF-TGNVKLKGIIIMGE 96
           G G  KP   R   ++  E+ +  E+ FN P  + N K+KG  + G+
Sbjct: 719 GSGALKPELSRRSATELFEAYSMAEMTFNPPVESSNPKIKGKFLQGD 765


>gi|47519562 reticulon 4 isoform E [Homo sapiens]
          Length = 986

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 102 PSEMRLYKNIPQMSFDDTEREPDQTFSLNRDLT--GELEYATKISRFS 147
           P+E  L +N+ + S + +E+   +T  ++RDLT   ELEY+   S FS
Sbjct: 54  PTEGTLQENVSEASKEVSEKA--KTLLIDRDLTEFSELEYSEMGSSFS 99


>gi|24431935 reticulon 4 isoform A [Homo sapiens]
          Length = 1192

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 102 PSEMRLYKNIPQMSFDDTEREPDQTFSLNRDLT--GELEYATKISRFS 147
           P+E  L +N+ + S + +E+   +T  ++RDLT   ELEY+   S FS
Sbjct: 260 PTEGTLQENVSEASKEVSEKA--KTLLIDRDLTEFSELEYSEMGSSFS 305


>gi|4506681 ribosomal protein S11 [Homo sapiens]
          Length = 158

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 25/81 (30%)

Query: 81  PFTGNVKLKGIIIMGEDDDSHPSEMRLYKNIPQMSFDDTEREPDQTFSLNRDLTGELEYA 140
           PFTGNV ++G I+ G                       T+ +  +T  + RD    L Y 
Sbjct: 61  PFTGNVSIRGRILSGV---------------------VTKMKMQRTIVIRRDY---LHYI 96

Query: 141 TKISRFSNVY-HLSIHISKNF 160
            K +RF   + ++S+H+S  F
Sbjct: 97  RKYNRFEKRHKNMSVHLSPCF 117


>gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Homo
           sapiens]
          Length = 1645

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 15/43 (34%), Positives = 19/43 (44%)

Query: 96  EDDDSHPSEMRLYKNIPQMSFDDTEREPDQTFSLNRDLTGELE 138
           + DD  PSE  L K + Q +  D  + PD   S   D    LE
Sbjct: 815 KQDDLAPSETCLKKELSQCNCIDLSKSPDPDKSTGTDCRSNLE 857


>gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Homo
           sapiens]
          Length = 1644

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 15/43 (34%), Positives = 19/43 (44%)

Query: 96  EDDDSHPSEMRLYKNIPQMSFDDTEREPDQTFSLNRDLTGELE 138
           + DD  PSE  L K + Q +  D  + PD   S   D    LE
Sbjct: 815 KQDDLAPSETCLKKELSQCNCIDLSKSPDPDKSTGTDCRSNLE 857


>gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Homo
           sapiens]
          Length = 1640

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 15/43 (34%), Positives = 19/43 (44%)

Query: 96  EDDDSHPSEMRLYKNIPQMSFDDTEREPDQTFSLNRDLTGELE 138
           + DD  PSE  L K + Q +  D  + PD   S   D    LE
Sbjct: 815 KQDDLAPSETCLKKELSQCNCIDLSKSPDPDKSTGTDCRSNLE 857


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,912,450
Number of Sequences: 37866
Number of extensions: 391347
Number of successful extensions: 834
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 828
Number of HSP's gapped (non-prelim): 12
length of query: 211
length of database: 18,247,518
effective HSP length: 98
effective length of query: 113
effective length of database: 14,536,650
effective search space: 1642641450
effective search space used: 1642641450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.