Search of human proteins with 21361720

Search of human proteins with 21361720

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|21361720 transmembrane protein 19 [Homo sapiens]
         (336 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|21361720 transmembrane protein 19 [Homo sapiens]                   675   0.0  
gi|169212904 PREDICTED: acyl-malonyl condensing enzyme 1-like 1 ...    33   0.28 
gi|22748975 acyl-malonyl condensing enzyme 1 [Homo sapiens]            32   0.61 
gi|89044650 PREDICTED: acyl-malonyl condensing enzyme 1-like 1 [...    30   2.3  
gi|16876447 acyl-malonyl condensing enzyme [Homo sapiens]              29   6.8  
gi|4507381 thromboxane A2 receptor [Homo sapiens]                      28   8.9  
gi|116235478 establishment of cohesion 1 homolog 1 [Homo sapiens]      28   8.9  
gi|122937211 KIAA0368 protein [Homo sapiens]                           28   8.9  

>gi|21361720 transmembrane protein 19 [Homo sapiens]
          Length = 336

 Score =  675 bits (1741), Expect = 0.0
 Identities = 336/336 (100%), Positives = 336/336 (100%)

Query: 1   MTDLNDNICKRYIKMITNIVILSLIICISLAFWIISMTASTYYGNLRPISPWRWLFSVVV 60
           MTDLNDNICKRYIKMITNIVILSLIICISLAFWIISMTASTYYGNLRPISPWRWLFSVVV
Sbjct: 1   MTDLNDNICKRYIKMITNIVILSLIICISLAFWIISMTASTYYGNLRPISPWRWLFSVVV 60

Query: 61  PVLIVSNGLKKKSLDHSGALGGLVVGFILTIANFSFFTSLLMFFLSSSKLTKWKGEVKKR 120
           PVLIVSNGLKKKSLDHSGALGGLVVGFILTIANFSFFTSLLMFFLSSSKLTKWKGEVKKR
Sbjct: 61  PVLIVSNGLKKKSLDHSGALGGLVVGFILTIANFSFFTSLLMFFLSSSKLTKWKGEVKKR 120

Query: 121 LDSEYKEGGQRNWVQVFCNGAVPTELALLYMIENGPGEIPVDFSKQYSASWMCLSLLAAL 180
           LDSEYKEGGQRNWVQVFCNGAVPTELALLYMIENGPGEIPVDFSKQYSASWMCLSLLAAL
Sbjct: 121 LDSEYKEGGQRNWVQVFCNGAVPTELALLYMIENGPGEIPVDFSKQYSASWMCLSLLAAL 180

Query: 181 ACSAGDTWASEVGPVLSKSSPRLITTWEKVPVGTNGGVTVVGLVSSLLGGTFVGIAYFLT 240
           ACSAGDTWASEVGPVLSKSSPRLITTWEKVPVGTNGGVTVVGLVSSLLGGTFVGIAYFLT
Sbjct: 181 ACSAGDTWASEVGPVLSKSSPRLITTWEKVPVGTNGGVTVVGLVSSLLGGTFVGIAYFLT 240

Query: 241 QLIFVNDLDISAPQWPIIAFGGLAGLLGSIVDSYLGATMQYTGLDESTGMVVNSPTNKAR 300
           QLIFVNDLDISAPQWPIIAFGGLAGLLGSIVDSYLGATMQYTGLDESTGMVVNSPTNKAR
Sbjct: 241 QLIFVNDLDISAPQWPIIAFGGLAGLLGSIVDSYLGATMQYTGLDESTGMVVNSPTNKAR 300

Query: 301 HIAGKPILDNNAVNLFSSVLIALLLPTAAWGFWPRG 336
           HIAGKPILDNNAVNLFSSVLIALLLPTAAWGFWPRG
Sbjct: 301 HIAGKPILDNNAVNLFSSVLIALLLPTAAWGFWPRG 336


>gi|169212904 PREDICTED: acyl-malonyl condensing enzyme 1-like 1
           [Homo sapiens]
          Length = 338

 Score = 33.5 bits (75), Expect = 0.28
 Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 19/110 (17%)

Query: 169 ASWMCLSLLAALACS---AGDTWASEVGPVLSKS---SPRLITTWEKVPVGTNGGVTVVG 222
           +S +C ++L     S   +G  W   +G +L       P L T  E    GT G  T++G
Sbjct: 137 SSTVCSAVLTLCLKSQVLSGYDWCGLLGSILGLIIIVGPELWTLQE----GTTGVYTILG 192

Query: 223 LVSSLLGGTFVGIAYFL-TQLIFVNDLDISAPQWPIIAF-GGLAGLLGSI 270
            V + LGG  + +   +   L F + L       P +AF  GL GLLGS+
Sbjct: 193 YVQAFLGGLALSLGLLVYRSLHFPSCL-------PTVAFLSGLVGLLGSV 235


>gi|22748975 acyl-malonyl condensing enzyme 1 [Homo sapiens]
          Length = 338

 Score = 32.3 bits (72), Expect = 0.61
 Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 14/91 (15%)

Query: 184 AGDTWASEVGPVLSKS---SPRLITTWEKVPVGTNGGVTVVGLVSSLLGGTFVGIAYFLT 240
           +G  W   +G +L       P L T  E    GT G  T +G V + LGG  + +     
Sbjct: 155 SGYDWCGLLGCILGLIIIVGPGLWTLQE----GTTGVYTALGYVEAFLGGLALSL----- 205

Query: 241 QLIFVNDLDISAPQWPIIAF-GGLAGLLGSI 270
           +L+    L    P  P +AF  GL GLLGS+
Sbjct: 206 RLLVYRSLHF-PPCLPTVAFLSGLVGLLGSV 235


>gi|89044650 PREDICTED: acyl-malonyl condensing enzyme 1-like 1
           [Homo sapiens]
          Length = 338

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 19/110 (17%)

Query: 169 ASWMCLSLLAALACS---AGDTWASEVGPVLSKS---SPRLITTWEKVPVGTNGGVTVVG 222
           +S +C ++L     S   +G  W   +G +L       P L T  E    GT G  T +G
Sbjct: 137 SSTVCSAILTLCLESQVLSGYDWCGLLGSILGLIIIVGPGLWTLQE----GTTGVYTGLG 192

Query: 223 LVSSLLGGTFVGIAYFL-TQLIFVNDLDISAPQWPIIAF-GGLAGLLGSI 270
            V + LGG  + +   +   L F + L       P +AF  GL GLLGS+
Sbjct: 193 YVQAFLGGLALSLGLLVYRSLHFPSCL-------PTVAFLSGLVGLLGSV 235


>gi|16876447 acyl-malonyl condensing enzyme [Homo sapiens]
          Length = 338

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 16/91 (17%)

Query: 185 GDTWASEVGPVLSKS---SPRLITTWEKVPVGTNGGVTVVGLVSSLLGGTFVGIAYFL-T 240
           G  W   +G +L       P L T  E    GT G  T +G V + LGG  + +   +  
Sbjct: 156 GYEWCGLLGSILGLIIILGPGLWTLQE----GTTGVYTTLGYVQAFLGGLALSLGLLVYR 211

Query: 241 QLIFVNDLDISAPQWPIIAF-GGLAGLLGSI 270
            L F + L       P +AF  GL GLLG +
Sbjct: 212 SLHFPSCL-------PTVAFLSGLVGLLGCV 235


>gi|4507381 thromboxane A2 receptor [Homo sapiens]
          Length = 343

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 206 TWEKVPVGTNGGVTVVGLVSSLLGGTFVGIAYFL 239
           +W  + +G   G    GL+ S+LGG  VG+++ L
Sbjct: 181 SWCFLTLGAESGDVAFGLLFSMLGGLSVGLSFLL 214


>gi|116235478 establishment of cohesion 1 homolog 1 [Homo sapiens]
          Length = 840

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 11/69 (15%)

Query: 63  LIVSNGLKKKSLDHSGALGGLVVGFILTIANFSFFTSLLMF---FLSSSKLTKWKGEVKK 119
           LI+  G K+      GA+   V G + T +N    T  L+F   F+S+ K   WK   K+
Sbjct: 605 LIIDAGQKR-----FGAVSCNVCGMLYTASNPEDETQHLLFHNQFISAVKYVGWK---KE 656

Query: 120 RLDSEYKEG 128
           R+ +EY +G
Sbjct: 657 RILAEYPDG 665


>gi|122937211 KIAA0368 protein [Homo sapiens]
          Length = 2017

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 230  GTFVGIAYFLTQLIFVNDLDISAPQWPI-----IAFGGLAGLLGSIVDSYLG 276
            G+F GI  +L +LI +    + +  W +     IA   +A    S+V  YLG
Sbjct: 1688 GSFGGIRLYLQELITITQKALQSQSWKMKAQGAIAMASIAKQTSSLVPPYLG 1739


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,163,207
Number of Sequences: 37866
Number of extensions: 515750
Number of successful extensions: 1193
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1191
Number of HSP's gapped (non-prelim): 8
length of query: 336
length of database: 18,247,518
effective HSP length: 103
effective length of query: 233
effective length of database: 14,347,320
effective search space: 3342925560
effective search space used: 3342925560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.