Search of human proteins with 11415028

Search of human proteins with 11415028

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|11415028 T-cell leukemia/lymphoma 1A [Homo sapiens]
         (114 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|148922879 T-cell leukemia/lymphoma 1A [Homo sapiens]               242   5e-65
gi|11415028 T-cell leukemia/lymphoma 1A [Homo sapiens]                242   5e-65
gi|66346715 mature T-cell proliferation 1 [Homo sapiens]               89   7e-19
gi|40548375 T-cell leukemia/lymphoma 1B [Homo sapiens]                 59   8e-10
gi|4759220 T-cell leukemia/lymphoma 1B [Homo sapiens]                  59   8e-10
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]          28   1.6  
gi|82659109 retinoblastoma-associated factor 600 [Homo sapiens]        27   4.6  
gi|239747350 PREDICTED: hypothetical protein XP_002346429 [Homo ...    26   5.9  
gi|5803066 leukocyte immunoglobulin-like receptor, subfamily A (...    26   7.8  
gi|145275204 corneal wound healing-related protein [Homo sapiens]      26   7.8  
gi|8923019 alkB, alkylation repair homolog 4 [Homo sapiens]            26   7.8  

>gi|148922879 T-cell leukemia/lymphoma 1A [Homo sapiens]
          Length = 114

 Score =  242 bits (617), Expect = 5e-65
 Identities = 114/114 (100%), Positives = 114/114 (100%)

Query: 1   MAECPTLGEAVTDHPDRLWAWEKFVYLDEKQHAWLPLTIEIKDRLQLRVLLRREDVVLGR 60
           MAECPTLGEAVTDHPDRLWAWEKFVYLDEKQHAWLPLTIEIKDRLQLRVLLRREDVVLGR
Sbjct: 1   MAECPTLGEAVTDHPDRLWAWEKFVYLDEKQHAWLPLTIEIKDRLQLRVLLRREDVVLGR 60

Query: 61  PMTPTQIGPSLLPIMWQLYPDGRYRSSDSSFWRLVYHIKIDGVEDMLLELLPDD 114
           PMTPTQIGPSLLPIMWQLYPDGRYRSSDSSFWRLVYHIKIDGVEDMLLELLPDD
Sbjct: 61  PMTPTQIGPSLLPIMWQLYPDGRYRSSDSSFWRLVYHIKIDGVEDMLLELLPDD 114


>gi|11415028 T-cell leukemia/lymphoma 1A [Homo sapiens]
          Length = 114

 Score =  242 bits (617), Expect = 5e-65
 Identities = 114/114 (100%), Positives = 114/114 (100%)

Query: 1   MAECPTLGEAVTDHPDRLWAWEKFVYLDEKQHAWLPLTIEIKDRLQLRVLLRREDVVLGR 60
           MAECPTLGEAVTDHPDRLWAWEKFVYLDEKQHAWLPLTIEIKDRLQLRVLLRREDVVLGR
Sbjct: 1   MAECPTLGEAVTDHPDRLWAWEKFVYLDEKQHAWLPLTIEIKDRLQLRVLLRREDVVLGR 60

Query: 61  PMTPTQIGPSLLPIMWQLYPDGRYRSSDSSFWRLVYHIKIDGVEDMLLELLPDD 114
           PMTPTQIGPSLLPIMWQLYPDGRYRSSDSSFWRLVYHIKIDGVEDMLLELLPDD
Sbjct: 61  PMTPTQIGPSLLPIMWQLYPDGRYRSSDSSFWRLVYHIKIDGVEDMLLELLPDD 114


>gi|66346715 mature T-cell proliferation 1 [Homo sapiens]
          Length = 107

 Score = 89.0 bits (219), Expect = 7e-19
 Identities = 43/107 (40%), Positives = 66/107 (61%), Gaps = 2/107 (1%)

Query: 8   GEAVTDHPDRLWAWEKFVYLDEKQHAWLPLTIEIKDRLQLRVLLRREDVVLGRPMTPTQI 67
           GE V   PD LW  ++ +Y DE Q  W+ +  E    L+ RV  ++  V LG    P+ +
Sbjct: 3   GEDVGAPPDHLWVHQEGIYRDEYQRTWVAVVEEETSFLRARV--QQIQVPLGDAARPSHL 60

Query: 68  GPSLLPIMWQLYPDGRYRSSDSSFWRLVYHIKIDGVEDMLLELLPDD 114
             S LP+MWQLYP+ RY  ++S  W++ +H+ + GV+++LL+LLPDD
Sbjct: 61  LTSQLPLMWQLYPEERYMDNNSRLWQIQHHLMVRGVQELLLKLLPDD 107


>gi|40548375 T-cell leukemia/lymphoma 1B [Homo sapiens]
          Length = 128

 Score = 58.9 bits (141), Expect = 8e-10
 Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 14/113 (12%)

Query: 15  PDRLWAWEKFVYLDEKQHAWLPLTIEIKDRLQ--------------LRVLLRREDVVLGR 60
           P RLW     +Y DE+   W+ + +      +              + V L +  V    
Sbjct: 13  PGRLWIQRPGIYEDEEGRTWVTVVVRFNPSRREWARASQGSRYEPSITVHLWQMAVHTRE 72

Query: 61  PMTPTQIGPSLLPIMWQLYPDGRYRSSDSSFWRLVYHIKIDGVEDMLLELLPD 113
            ++  Q+  S LP +WQLYP  +YR++DSSFW +  H +ID +E ++L   P+
Sbjct: 73  LLSSGQMPFSQLPAVWQLYPGRKYRAADSSFWEIADHGQIDSMEQLVLTYQPE 125


>gi|4759220 T-cell leukemia/lymphoma 1B [Homo sapiens]
          Length = 128

 Score = 58.9 bits (141), Expect = 8e-10
 Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 14/113 (12%)

Query: 15  PDRLWAWEKFVYLDEKQHAWLPLTIEIKDRLQ--------------LRVLLRREDVVLGR 60
           P RLW     +Y DE+   W+ + +      +              + V L +  V    
Sbjct: 13  PGRLWIQRPGIYEDEEGRTWVTVVVRFNPSRREWARASQGSRYEPSITVHLWQMAVHTRE 72

Query: 61  PMTPTQIGPSLLPIMWQLYPDGRYRSSDSSFWRLVYHIKIDGVEDMLLELLPD 113
            ++  Q+  S LP +WQLYP  +YR++DSSFW +  H +ID +E ++L   P+
Sbjct: 73  LLSSGQMPFSQLPAVWQLYPGRKYRAADSSFWEIADHGQIDSMEQLVLTYQPE 125


>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
          Length = 2944

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 10/66 (15%)

Query: 50  LLRREDVVLGRPMTPTQIGPSLLPIMWQLYPDGR-YRSSDSSFWRLVYHIKIDGVEDMLL 108
           L+ R D  + + + P  +GP+ + + W L P+ R YR      WR     +  G+E    
Sbjct: 409 LMARTDASVEQTLRPVILGPTSILLSWNLVPEARGYRLE----WR-----RETGLEPPQK 459

Query: 109 ELLPDD 114
            +LP D
Sbjct: 460 VVLPSD 465


>gi|82659109 retinoblastoma-associated factor 600 [Homo sapiens]
          Length = 5183

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 17/61 (27%), Positives = 29/61 (47%)

Query: 35   LPLTIEIKDRLQLRVLLRREDVVLGRPMTPTQIGPSLLPIMWQLYPDGRYRSSDSSFWRL 94
            LPL   +K  L   V L  + +V    M P Q+  +LLP++ +   +     S +S  R+
Sbjct: 1278 LPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLLESSTESVAEISSNSLERI 1337

Query: 95   V 95
            +
Sbjct: 1338 L 1338


>gi|239747350 PREDICTED: hypothetical protein XP_002346429 [Homo
           sapiens]
          Length = 438

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 24  FVYLDEKQHAWLPLTIE 40
           F++  EK+H WLP T+E
Sbjct: 164 FLFDAEKEHLWLPTTLE 180


>gi|5803066 leukocyte immunoglobulin-like receptor, subfamily A
           (with TM domain), member 1 [Homo sapiens]
          Length = 489

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 11/60 (18%)

Query: 15  PDRLWAWEKFVYLDEKQHAW-LPLTIEIKDRLQLRVLLRREDVVLGRPMTPTQIGPSLLP 73
           P R W++  + Y     H W LP      D L+L VL      V  +P    Q GP + P
Sbjct: 189 PSRRWSYRCYAYDSNSPHVWSLP-----SDLLELLVL-----GVSKKPSLSVQPGPIVAP 238


>gi|145275204 corneal wound healing-related protein [Homo sapiens]
          Length = 725

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 17/77 (22%), Positives = 33/77 (42%)

Query: 26  YLDEKQHAWLPLTIEIKDRLQLRVLLRREDVVLGRPMTPTQIGPSLLPIMWQLYPDGRYR 85
           YL E  +AWL  T+   D  Q+      E+   GR    T+    + P+  ++     Y+
Sbjct: 524 YLSEFLYAWLMSTLSRADGSQMAEERIMEEQQKGRSSKKTKKKKKVRPLSREITMSQAYQ 583

Query: 86  SSDSSFWRLVYHIKIDG 102
           +  +  ++ +    +DG
Sbjct: 584 NMCAGMFKTMVAFDMDG 600


>gi|8923019 alkB, alkylation repair homolog 4 [Homo sapiens]
          Length = 302

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 4   CPTLGEAVTDHPDRLWAW-EKFVYLD 28
           CP  G A+  H D  W W E+ V L+
Sbjct: 159 CPERGSAIDPHLDDAWLWGERLVSLN 184


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.142    0.464 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,871,923
Number of Sequences: 37866
Number of extensions: 198435
Number of successful extensions: 320
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 306
Number of HSP's gapped (non-prelim): 13
length of query: 114
length of database: 18,247,518
effective HSP length: 84
effective length of query: 30
effective length of database: 15,066,774
effective search space: 452003220
effective search space used: 452003220
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.