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Search of human proteins with 113428448
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113428448 PREDICTED: hypothetical protein [Homo sapiens]
(90 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757124 PREDICTED: hypothetical protein [Homo sapiens] 187 1e-48
gi|113428448 PREDICTED: hypothetical protein [Homo sapiens] 187 1e-48
gi|169213522 PREDICTED: hypothetical protein [Homo sapiens] 187 1e-48
gi|14670354 general transcription factor II, i isoform 3 [Homo s... 33 0.037
gi|14670352 general transcription factor II, i isoform 2 [Homo s... 33 0.037
gi|14670350 general transcription factor II, i isoform 1 [Homo s... 33 0.037
gi|169881252 general transcription factor II, i isoform 4 [Homo ... 33 0.037
gi|48762700 GTF2I repeat domain containing 2 [Homo sapiens] 31 0.24
gi|51241788 GTF2I repeat domain containing 2B [Homo sapiens] 31 0.24
gi|14589937 protocadherin 8 isoform 2 precursor [Homo sapiens] 25 10.0
gi|6631102 protocadherin 8 isoform 1 precursor [Homo sapiens] 25 10.0
>gi|239757124 PREDICTED: hypothetical protein [Homo sapiens]
Length = 106
Score = 187 bits (476), Expect = 1e-48
Identities = 90/90 (100%), Positives = 90/90 (100%)
Query: 1 MMMQCLLYERFLRTSPLLPTCGEDNKEKRSRNQKASRGMRCRIPIKHSEGADLTVLVWVV 60
MMMQCLLYERFLRTSPLLPTCGEDNKEKRSRNQKASRGMRCRIPIKHSEGADLTVLVWVV
Sbjct: 1 MMMQCLLYERFLRTSPLLPTCGEDNKEKRSRNQKASRGMRCRIPIKHSEGADLTVLVWVV 60
Query: 61 ERDISVLSVSTPFRIPLNHFLYSIRTWKFE 90
ERDISVLSVSTPFRIPLNHFLYSIRTWKFE
Sbjct: 61 ERDISVLSVSTPFRIPLNHFLYSIRTWKFE 90
>gi|113428448 PREDICTED: hypothetical protein [Homo sapiens]
Length = 90
Score = 187 bits (476), Expect = 1e-48
Identities = 90/90 (100%), Positives = 90/90 (100%)
Query: 1 MMMQCLLYERFLRTSPLLPTCGEDNKEKRSRNQKASRGMRCRIPIKHSEGADLTVLVWVV 60
MMMQCLLYERFLRTSPLLPTCGEDNKEKRSRNQKASRGMRCRIPIKHSEGADLTVLVWVV
Sbjct: 1 MMMQCLLYERFLRTSPLLPTCGEDNKEKRSRNQKASRGMRCRIPIKHSEGADLTVLVWVV 60
Query: 61 ERDISVLSVSTPFRIPLNHFLYSIRTWKFE 90
ERDISVLSVSTPFRIPLNHFLYSIRTWKFE
Sbjct: 61 ERDISVLSVSTPFRIPLNHFLYSIRTWKFE 90
>gi|169213522 PREDICTED: hypothetical protein [Homo sapiens]
Length = 106
Score = 187 bits (476), Expect = 1e-48
Identities = 90/90 (100%), Positives = 90/90 (100%)
Query: 1 MMMQCLLYERFLRTSPLLPTCGEDNKEKRSRNQKASRGMRCRIPIKHSEGADLTVLVWVV 60
MMMQCLLYERFLRTSPLLPTCGEDNKEKRSRNQKASRGMRCRIPIKHSEGADLTVLVWVV
Sbjct: 1 MMMQCLLYERFLRTSPLLPTCGEDNKEKRSRNQKASRGMRCRIPIKHSEGADLTVLVWVV 60
Query: 61 ERDISVLSVSTPFRIPLNHFLYSIRTWKFE 90
ERDISVLSVSTPFRIPLNHFLYSIRTWKFE
Sbjct: 61 ERDISVLSVSTPFRIPLNHFLYSIRTWKFE 90
>gi|14670354 general transcription factor II, i isoform 3 [Homo
sapiens]
Length = 977
Score = 33.5 bits (75), Expect = 0.037
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 5 CLLYERFLRTSPLLPTCGEDNKEKRSRNQKASRGMRCRIPIKHSEGADLTVLVWVVERDI 64
C Y + L S ++P E K R ++ +G+ + KH E DL L W++E
Sbjct: 121 CFCYGKALGKSTVVPVPYE--KMLRDQSAVVVQGLPEGVAFKHPENYDLATLKWILENKA 178
Query: 65 SV-LSVSTPFRIPLNH 79
+ + PF P H
Sbjct: 179 GISFIIKRPFLEPKKH 194
>gi|14670352 general transcription factor II, i isoform 2 [Homo
sapiens]
Length = 978
Score = 33.5 bits (75), Expect = 0.037
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 5 CLLYERFLRTSPLLPTCGEDNKEKRSRNQKASRGMRCRIPIKHSEGADLTVLVWVVERDI 64
C Y + L S ++P E K R ++ +G+ + KH E DL L W++E
Sbjct: 121 CFCYGKALGKSTVVPVPYE--KMLRDQSAVVVQGLPEGVAFKHPENYDLATLKWILENKA 178
Query: 65 SV-LSVSTPFRIPLNH 79
+ + PF P H
Sbjct: 179 GISFIIKRPFLEPKKH 194
>gi|14670350 general transcription factor II, i isoform 1 [Homo
sapiens]
Length = 998
Score = 33.5 bits (75), Expect = 0.037
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 5 CLLYERFLRTSPLLPTCGEDNKEKRSRNQKASRGMRCRIPIKHSEGADLTVLVWVVERDI 64
C Y + L S ++P E K R ++ +G+ + KH E DL L W++E
Sbjct: 121 CFCYGKALGKSTVVPVPYE--KMLRDQSAVVVQGLPEGVAFKHPENYDLATLKWILENKA 178
Query: 65 SV-LSVSTPFRIPLNH 79
+ + PF P H
Sbjct: 179 GISFIIKRPFLEPKKH 194
>gi|169881252 general transcription factor II, i isoform 4 [Homo
sapiens]
Length = 957
Score = 33.5 bits (75), Expect = 0.037
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 5 CLLYERFLRTSPLLPTCGEDNKEKRSRNQKASRGMRCRIPIKHSEGADLTVLVWVVERDI 64
C Y + L S ++P E K R ++ +G+ + KH E DL L W++E
Sbjct: 121 CFCYGKALGKSTVVPVPYE--KMLRDQSAVVVQGLPEGVAFKHPENYDLATLKWILENKA 178
Query: 65 SV-LSVSTPFRIPLNH 79
+ + PF P H
Sbjct: 179 GISFIIKRPFLEPKKH 194
>gi|48762700 GTF2I repeat domain containing 2 [Homo sapiens]
Length = 949
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 5 CLLYERFLRTSPLLPTCGEDNKEKRSRNQKASRGMRCRIPIKHSEGADLTVLVWVVERDI 64
C Y + L T+ ++P E K R ++ +G+ + +H E DL L W++E
Sbjct: 116 CFCYGKALGTTVMVPVPYE--KMLRDQSAVVVQGLPEGVAFQHPENYDLATLKWILENKA 173
Query: 65 SV-LSVSTPFRIP 76
+ ++ PF P
Sbjct: 174 GISFIINRPFLGP 186
>gi|51241788 GTF2I repeat domain containing 2B [Homo sapiens]
Length = 949
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 5 CLLYERFLRTSPLLPTCGEDNKEKRSRNQKASRGMRCRIPIKHSEGADLTVLVWVVERDI 64
C Y + L T+ ++P E K R ++ +G+ + +H E DL L W++E
Sbjct: 116 CFCYGKALGTTVMVPVPYE--KMLRDQSAVVVQGLPEGVAFQHPENYDLATLKWILENKA 173
Query: 65 SV-LSVSTPFRIP 76
+ ++ PF P
Sbjct: 174 GISFIINRPFLGP 186
>gi|14589937 protocadherin 8 isoform 2 precursor [Homo sapiens]
Length = 973
Score = 25.4 bits (54), Expect = 10.0
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 27 EKRSRNQKASRGMRCRIPIKHSEGADLTVLVWV---VERDISVLSVST--------PFRI 75
E R N A R R +IP++ SEGA + + + V+ D+ + T PFR+
Sbjct: 124 EVRDVNDHAPRFPRAQIPVEVSEGAAVGTRIPLEVPVDEDVGANGLQTVRLAEPHSPFRV 183
Query: 76 PL 77
L
Sbjct: 184 EL 185
>gi|6631102 protocadherin 8 isoform 1 precursor [Homo sapiens]
Length = 1070
Score = 25.4 bits (54), Expect = 10.0
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 27 EKRSRNQKASRGMRCRIPIKHSEGADLTVLVWV---VERDISVLSVST--------PFRI 75
E R N A R R +IP++ SEGA + + + V+ D+ + T PFR+
Sbjct: 124 EVRDVNDHAPRFPRAQIPVEVSEGAAVGTRIPLEVPVDEDVGANGLQTVRLAEPHSPFRV 183
Query: 76 PL 77
L
Sbjct: 184 EL 185
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.137 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,441,995
Number of Sequences: 37866
Number of extensions: 120600
Number of successful extensions: 349
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 342
Number of HSP's gapped (non-prelim): 11
length of query: 90
length of database: 18,247,518
effective HSP length: 62
effective length of query: 28
effective length of database: 15,899,826
effective search space: 445195128
effective search space used: 445195128
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.