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Search of human proteins with 21361171
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21361171 brain and reproductive organ-expressed (TNFRSF1A
modulator) isoform 1 [Homo sapiens]
(415 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21361171 brain and reproductive organ-expressed (TNFRSF1A mod... 867 0.0
gi|40353757 brain and reproductive organ-expressed (TNFRSF1A mod... 754 0.0
gi|40353755 brain and reproductive organ-expressed (TNFRSF1A mod... 754 0.0
gi|40353759 brain and reproductive organ-expressed (TNFRSF1A mod... 754 0.0
gi|40353761 brain and reproductive organ-expressed (TNFRSF1A mod... 754 0.0
gi|169213977 PREDICTED: hypothetical protein [Homo sapiens] 30 3.1
gi|169214385 PREDICTED: hypothetical protein [Homo sapiens] 30 3.1
gi|169213314 PREDICTED: hypothetical protein [Homo sapiens] 30 3.1
gi|7656955 dopamine receptor D1 interacting protein [Homo sapiens] 30 3.1
gi|94681049 hypothetical protein LOC80217 [Homo sapiens] 30 3.1
gi|126012497 dynein, axonemal, heavy polypeptide 8 [Homo sapiens] 30 4.0
gi|27894339 keratin 23 [Homo sapiens] 30 5.3
gi|148886692 FAT tumor suppressor homolog 3 [Homo sapiens] 30 5.3
gi|4826964 UV excision repair protein RAD23 homolog A [Homo sapi... 29 9.0
>gi|21361171 brain and reproductive organ-expressed (TNFRSF1A
modulator) isoform 1 [Homo sapiens]
Length = 415
Score = 867 bits (2240), Expect = 0.0
Identities = 415/415 (100%), Positives = 415/415 (100%)
Query: 1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 60
MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
Sbjct: 1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 60
Query: 61 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL 120
PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL
Sbjct: 61 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL 120
Query: 121 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 180
VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
Sbjct: 121 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 180
Query: 181 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 240
FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
Sbjct: 181 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 240
Query: 241 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 300
PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
Sbjct: 241 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 300
Query: 301 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK 360
LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK
Sbjct: 301 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK 360
Query: 361 RAKGCQGSRDACSPWEQVLAFAVAKTGCKLLQPQRNWPSSRGPPWRASEGERTAQ 415
RAKGCQGSRDACSPWEQVLAFAVAKTGCKLLQPQRNWPSSRGPPWRASEGERTAQ
Sbjct: 361 RAKGCQGSRDACSPWEQVLAFAVAKTGCKLLQPQRNWPSSRGPPWRASEGERTAQ 415
>gi|40353757 brain and reproductive organ-expressed (TNFRSF1A
modulator) isoform 2 [Homo sapiens]
Length = 383
Score = 754 bits (1948), Expect = 0.0
Identities = 363/363 (100%), Positives = 363/363 (100%)
Query: 1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 60
MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
Sbjct: 1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 60
Query: 61 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL 120
PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL
Sbjct: 61 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL 120
Query: 121 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 180
VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
Sbjct: 121 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 180
Query: 181 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 240
FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
Sbjct: 181 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 240
Query: 241 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 300
PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
Sbjct: 241 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 300
Query: 301 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK 360
LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK
Sbjct: 301 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK 360
Query: 361 RAK 363
RAK
Sbjct: 361 RAK 363
>gi|40353755 brain and reproductive organ-expressed (TNFRSF1A
modulator) isoform 3 [Homo sapiens]
Length = 376
Score = 754 bits (1948), Expect = 0.0
Identities = 363/363 (100%), Positives = 363/363 (100%)
Query: 1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 60
MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
Sbjct: 1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 60
Query: 61 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL 120
PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL
Sbjct: 61 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL 120
Query: 121 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 180
VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
Sbjct: 121 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 180
Query: 181 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 240
FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
Sbjct: 181 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 240
Query: 241 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 300
PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
Sbjct: 241 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 300
Query: 301 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK 360
LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK
Sbjct: 301 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK 360
Query: 361 RAK 363
RAK
Sbjct: 361 RAK 363
>gi|40353759 brain and reproductive organ-expressed (TNFRSF1A
modulator) isoform 3 [Homo sapiens]
Length = 376
Score = 754 bits (1948), Expect = 0.0
Identities = 363/363 (100%), Positives = 363/363 (100%)
Query: 1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 60
MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
Sbjct: 1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 60
Query: 61 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL 120
PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL
Sbjct: 61 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL 120
Query: 121 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 180
VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
Sbjct: 121 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 180
Query: 181 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 240
FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
Sbjct: 181 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 240
Query: 241 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 300
PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
Sbjct: 241 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 300
Query: 301 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK 360
LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK
Sbjct: 301 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK 360
Query: 361 RAK 363
RAK
Sbjct: 361 RAK 363
>gi|40353761 brain and reproductive organ-expressed (TNFRSF1A
modulator) isoform 2 [Homo sapiens]
Length = 383
Score = 754 bits (1948), Expect = 0.0
Identities = 363/363 (100%), Positives = 363/363 (100%)
Query: 1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 60
MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI
Sbjct: 1 MSPEVALNRISPMLSPFISSVVRNGKVGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHI 60
Query: 61 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL 120
PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL
Sbjct: 61 PYAGETLKWDIIFNAQYPELPPDFIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKEL 120
Query: 121 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 180
VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD
Sbjct: 121 VQQYHQFQCSRLRESSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVD 180
Query: 181 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 240
FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF
Sbjct: 181 FSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAF 240
Query: 241 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 300
PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL
Sbjct: 241 PGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLL 300
Query: 301 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK 360
LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK
Sbjct: 301 LMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAK 360
Query: 361 RAK 363
RAK
Sbjct: 361 RAK 363
>gi|169213977 PREDICTED: hypothetical protein [Homo sapiens]
Length = 277
Score = 30.4 bits (67), Expect = 3.1
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 357 EMAKRAKGCQGSRDACSPWEQVLAFAVAKTGCKLLQPQRNWPSSRGPPWRASEGERT 413
E ++R + C G DA SPW Q L + + G L P GP R EG T
Sbjct: 115 ERSRRCRCCLG--DAASPWAQSLPYTQVQGGRGFL------PEEVGPHQRGQEGAGT 163
>gi|169214385 PREDICTED: hypothetical protein [Homo sapiens]
Length = 277
Score = 30.4 bits (67), Expect = 3.1
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 357 EMAKRAKGCQGSRDACSPWEQVLAFAVAKTGCKLLQPQRNWPSSRGPPWRASEGERT 413
E ++R + C G DA SPW Q L + + G L P GP R EG T
Sbjct: 115 ERSRRCRCCLG--DAASPWAQSLPYTQVQGGRGFL------PEEVGPHQRGQEGAGT 163
>gi|169213314 PREDICTED: hypothetical protein [Homo sapiens]
Length = 277
Score = 30.4 bits (67), Expect = 3.1
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 357 EMAKRAKGCQGSRDACSPWEQVLAFAVAKTGCKLLQPQRNWPSSRGPPWRASEGERT 413
E ++R + C G DA SPW Q L + + G L P GP R EG T
Sbjct: 115 ERSRRCRCCLG--DAASPWAQSLPYTQVQGGRGFL------PEEVGPHQRGQEGAGT 163
>gi|7656955 dopamine receptor D1 interacting protein [Homo sapiens]
Length = 217
Score = 30.4 bits (67), Expect = 3.1
Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 27/96 (28%)
Query: 314 LPLFFPRD----QPTLTFQSVYHFTNSGQLYSQAQKNYPYSPRWDGNEMAKRAKGCQGSR 369
+PL P D QP L Q V QL S Q+N+P +G R
Sbjct: 27 VPLISPLDISQLQPPLPDQVVIKTQTEYQLSSPDQQNFP---------------DLEGQR 71
Query: 370 DACS--------PWEQVLAFAVAKTGCKLLQPQRNW 397
CS P +++AFA+A GC L+ + W
Sbjct: 72 LNCSHPEEGRRLPTARMIAFAMALLGCVLIMYKAIW 107
>gi|94681049 hypothetical protein LOC80217 [Homo sapiens]
Length = 1665
Score = 30.4 bits (67), Expect = 3.1
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 179 VDFSNIPTYLLKDVNEDPGEDVALLSVSFE 208
V +SN+P YLL ++ D G D +LLS E
Sbjct: 969 VKYSNLPNYLLGSLSTDFGVDTSLLSSQLE 998
>gi|126012497 dynein, axonemal, heavy polypeptide 8 [Homo sapiens]
Length = 4490
Score = 30.0 bits (66), Expect = 4.0
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 84 FIFGEDAEFLPDPSALQNLASWNPSNPECLLLVVKELVQQYHQFQCSRLRESSRLMFEYQ 143
F+ + L ALQ L + N CL L + +++ Q+ + L + +L Y
Sbjct: 443 FMNSSFGKILSSQQALQLLQRFQKLNIPCLGLEINHTIERILQYYVAELDATKKL---YH 499
Query: 144 TLLEEPQYGENMEIYAGK 161
+ ++P NM AGK
Sbjct: 500 SQKDDPPLARNMPPIAGK 517
>gi|27894339 keratin 23 [Homo sapiens]
Length = 422
Score = 29.6 bits (65), Expect = 5.3
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 97 SALQNLASWNPSNPECLLLVVKELVQQYHQFQCSRLRESSRLMFEYQTLL 146
SAL+N+ S S C L ++E++ Y + E R EYQ LL
Sbjct: 309 SALENMLSETQSRYSCKLQDMQEIISHYEEELTQLRHELERQNNEYQVLL 358
>gi|148886692 FAT tumor suppressor homolog 3 [Homo sapiens]
Length = 4557
Score = 29.6 bits (65), Expect = 5.3
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Query: 148 EPQYGENMEIYAGKKNNWTGEF-----SARFLLKLPVDFSNIPTYLLKDVNEDPGEDVAL 202
+P G ++ N++ G F S L +D+ Y L +D G V+L
Sbjct: 962 DPDLGLGGQVRYSLVNDYNGRFEIDKASGAIRLSKELDYEKQQFYNLTVRAKDKGRPVSL 1021
Query: 203 LSVSFEDTEATQVYPKLYLSPRIEHALGGS 232
SVSF + E V L+ + A+ GS
Sbjct: 1022 SSVSFVEVEVVDVNENLHTPYFPDFAVVGS 1051
>gi|4826964 UV excision repair protein RAD23 homolog A [Homo
sapiens]
Length = 363
Score = 28.9 bits (63), Expect = 9.0
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 75 AQYPELPPDFIFGEDA-EFLPDPSALQNLASWNPSNPECLLLVVKELVQQYHQFQCSRLR 133
+Q E P GE+ EFL D QN+ NP L ++++L Q+ Q L+
Sbjct: 216 SQVSEQPATEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQL----LQ 271
Query: 134 ESSRLMFEYQTLLEEP 149
+ SR ++ +L EP
Sbjct: 272 QISRHQEQFIQMLNEP 287
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,697,884
Number of Sequences: 37866
Number of extensions: 841533
Number of successful extensions: 1630
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1621
Number of HSP's gapped (non-prelim): 15
length of query: 415
length of database: 18,247,518
effective HSP length: 105
effective length of query: 310
effective length of database: 14,271,588
effective search space: 4424192280
effective search space used: 4424192280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.