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Search of human proteins with 21359867
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21359867 cytochrome c-1 [Homo sapiens]
(325 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21359867 cytochrome c-1 [Homo sapiens] 662 0.0
gi|5902108 SRY-box 21 [Homo sapiens] 33 0.35
gi|110624765 POU domain, class 3, transcription factor 1 [Homo s... 31 1.3
gi|150010572 SH3 domain containing ring finger 3 [Homo sapiens] 31 1.7
gi|19923198 runt-related transcription factor 1 isoform AML1c [H... 30 2.9
gi|49574546 runt-related transcription factor 1 isoform AML1b [H... 30 2.9
gi|169216010 PREDICTED: preferentially expressed antigen in mela... 30 2.9
gi|169215813 PREDICTED: preferentially expressed antigen in mela... 30 2.9
gi|239746677 PREDICTED: preferentially expressed antigen in mela... 30 2.9
gi|169183867 PREDICTED: hypothetical protein [Homo sapiens] 30 3.8
gi|148762978 similar to CG15216-PA [Homo sapiens] 30 3.8
gi|61742829 disrupted in schizophrenia 1 isoform S [Homo sapiens] 29 6.5
gi|61742827 disrupted in schizophrenia 1 isoform Es [Homo sapiens] 29 6.5
gi|61742825 disrupted in schizophrenia 1 isoform Lv [Homo sapiens] 29 6.5
gi|61742823 disrupted in schizophrenia 1 isoform L [Homo sapiens] 29 6.5
gi|169210212 PREDICTED: hypothetical protein [Homo sapiens] 29 6.5
gi|169210418 PREDICTED: hypothetical protein [Homo sapiens] 29 6.5
gi|169209848 PREDICTED: hypothetical protein [Homo sapiens] 29 6.5
gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens] 29 6.5
gi|119709822 castor homolog 1, zinc finger isoform b [Homo sapiens] 29 6.5
gi|112807221 N-acetylgalactosaminyltransferase 12 [Homo sapiens] 28 8.5
>gi|21359867 cytochrome c-1 [Homo sapiens]
Length = 325
Score = 662 bits (1707), Expect = 0.0
Identities = 325/325 (100%), Positives = 325/325 (100%)
Query: 1 MAAAAASLRGVVLGPRGAGLPGARARGLLCSARPGQLPLRTPQAVALSSKSGLSRGRKVM 60
MAAAAASLRGVVLGPRGAGLPGARARGLLCSARPGQLPLRTPQAVALSSKSGLSRGRKVM
Sbjct: 1 MAAAAASLRGVVLGPRGAGLPGARARGLLCSARPGQLPLRTPQAVALSSKSGLSRGRKVM 60
Query: 61 LSALGMLAAGGAGLAVALHSAVSASDLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQV 120
LSALGMLAAGGAGLAVALHSAVSASDLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQV
Sbjct: 61 LSALGMLAAGGAGLAVALHSAVSASDLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQV 120
Query: 121 CASCHSMDFVAYRHLVGVCYTEDEAKELAAEVEVQDGPNEDGEMFMRPGKLFDYFPKPYP 180
CASCHSMDFVAYRHLVGVCYTEDEAKELAAEVEVQDGPNEDGEMFMRPGKLFDYFPKPYP
Sbjct: 121 CASCHSMDFVAYRHLVGVCYTEDEAKELAAEVEVQDGPNEDGEMFMRPGKLFDYFPKPYP 180
Query: 181 NSEAARAANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQ 240
NSEAARAANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQ
Sbjct: 181 NSEAARAANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQ 240
Query: 241 AIAMAPPIYTDVLEFDDGTPATMSQIAKDVCTFLRWASEPEHDHRKRMGLKMLMMMALLV 300
AIAMAPPIYTDVLEFDDGTPATMSQIAKDVCTFLRWASEPEHDHRKRMGLKMLMMMALLV
Sbjct: 241 AIAMAPPIYTDVLEFDDGTPATMSQIAKDVCTFLRWASEPEHDHRKRMGLKMLMMMALLV 300
Query: 301 PLVYTIKRHKWSVLKSRKLAYRPPK 325
PLVYTIKRHKWSVLKSRKLAYRPPK
Sbjct: 301 PLVYTIKRHKWSVLKSRKLAYRPPK 325
>gi|5902108 SRY-box 21 [Homo sapiens]
Length = 276
Score = 33.1 bits (74), Expect = 0.35
Identities = 27/90 (30%), Positives = 34/90 (37%)
Query: 2 AAAAASLRGVVLGPRGAGLPGARARGLLCSARPGQLPLRTPQAVALSSKSGLSRGRKVML 61
AAAAA+ V P+ A A A + L L + A SS SGL +
Sbjct: 138 AAAAAAAAARVFFPQSAAAAAAAAAAAAAGSPYSLLDLGSKMAEISSSSSGLPYASSLGY 197
Query: 62 SALGMLAAGGAGLAVALHSAVSASDLELHP 91
G A GA A A +A + HP
Sbjct: 198 PTAGAGAFHGAAAAAAAAAAAAGGHTHSHP 227
>gi|110624765 POU domain, class 3, transcription factor 1 [Homo
sapiens]
Length = 451
Score = 31.2 bits (69), Expect = 1.3
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 27 GLLCSARPGQLPLRTPQAVALSSKSGLSRGRKVMLSALGMLAAGGAGLAVALHSAV---- 82
G S PG PQ + L +++ G L+ GMLAAGG G LH A+
Sbjct: 138 GPAMSPSPGASGGHQPQPLGLYAQAAYPGGGGGGLA--GMLAAGGGGAGPGLHHALHEDG 195
Query: 83 SASDLELHPPSYPWSH 98
+ LE PP + +H
Sbjct: 196 HEAQLEPSPPPHLGAH 211
>gi|150010572 SH3 domain containing ring finger 3 [Homo sapiens]
Length = 882
Score = 30.8 bits (68), Expect = 1.7
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 21 PGARARGLLCSARPGQLPLRTPQAVALSSKSGLSRGRKVMLSALGMLAAGGAGLAVALHS 80
PG+ + L +A LP+ TPQA A + G + SA + + ++ A HS
Sbjct: 554 PGSGSLSSLATATRPALPITTPQAHAQHPTASPPTGSCLRHSAQPTASQARSTISTAAHS 613
Query: 81 AVSASDLELHPPSYPWSHRGLLSSLDHTSIR 111
A A D S P + S L TS+R
Sbjct: 614 AAQAQDRPTATVS-PLRTQNSPSRLPATSLR 643
>gi|19923198 runt-related transcription factor 1 isoform AML1c [Homo
sapiens]
Length = 480
Score = 30.0 bits (66), Expect = 2.9
Identities = 24/74 (32%), Positives = 28/74 (37%), Gaps = 9/74 (12%)
Query: 174 YFPKPYPNSEAARAANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPP------TGVSL 227
Y P PYP S A+ A P A G Y FS++ G PP T S
Sbjct: 380 YLPPPYPGSSQAQGGPFQASSPSYHLYYGASAG--SYQFSMVGGERSPPRILPPCTNAST 437
Query: 228 REGLYFNPYFPGQA 241
L NP P Q+
Sbjct: 438 GSAL-LNPSLPNQS 450
>gi|49574546 runt-related transcription factor 1 isoform AML1b [Homo
sapiens]
Length = 453
Score = 30.0 bits (66), Expect = 2.9
Identities = 24/74 (32%), Positives = 28/74 (37%), Gaps = 9/74 (12%)
Query: 174 YFPKPYPNSEAARAANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPP------TGVSL 227
Y P PYP S A+ A P A G Y FS++ G PP T S
Sbjct: 353 YLPPPYPGSSQAQGGPFQASSPSYHLYYGASAG--SYQFSMVGGERSPPRILPPCTNAST 410
Query: 228 REGLYFNPYFPGQA 241
L NP P Q+
Sbjct: 411 GSAL-LNPSLPNQS 423
>gi|169216010 PREDICTED: preferentially expressed antigen in
melanoma-like [Homo sapiens]
Length = 520
Score = 30.0 bits (66), Expect = 2.9
Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 95 PWSHRGLLSSLDHTSIRRGFQVYKQVCASCHSMDFVAYRHLVGVC---YTEDEAKELAAE 151
P S LLS L+HT G KQV +D Y H GVC ED+ +L AE
Sbjct: 439 PISSACLLSLLEHTM---GLMELKQVLYPI-PVDCCIYLH--GVCRGPVNEDKLCQLQAE 492
Query: 152 VEVQDGPNEDGEMFMRPGKLFDY 174
++ Q + +M P +F Y
Sbjct: 493 IQKQLQAMQQADMQWSPSTVFAY 515
>gi|169215813 PREDICTED: preferentially expressed antigen in
melanoma-like [Homo sapiens]
Length = 520
Score = 30.0 bits (66), Expect = 2.9
Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 95 PWSHRGLLSSLDHTSIRRGFQVYKQVCASCHSMDFVAYRHLVGVC---YTEDEAKELAAE 151
P S LLS L+HT G KQV +D Y H GVC ED+ +L AE
Sbjct: 439 PISSACLLSLLEHTM---GLMELKQVLYPI-PVDCCIYLH--GVCRGPVNEDKLCQLQAE 492
Query: 152 VEVQDGPNEDGEMFMRPGKLFDY 174
++ Q + +M P +F Y
Sbjct: 493 IQKQLQAMQQADMQWSPSTVFAY 515
>gi|239746677 PREDICTED: preferentially expressed antigen in
melanoma-like [Homo sapiens]
Length = 520
Score = 30.0 bits (66), Expect = 2.9
Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 95 PWSHRGLLSSLDHTSIRRGFQVYKQVCASCHSMDFVAYRHLVGVC---YTEDEAKELAAE 151
P S LLS L+HT G KQV +D Y H GVC ED+ +L AE
Sbjct: 439 PISSACLLSLLEHTM---GLMELKQVLYPI-PVDCCIYLH--GVCRGPVNEDKLCQLQAE 492
Query: 152 VEVQDGPNEDGEMFMRPGKLFDY 174
++ Q + +M P +F Y
Sbjct: 493 IQKQLQAMQQADMQWSPSTVFAY 515
>gi|169183867 PREDICTED: hypothetical protein [Homo sapiens]
Length = 203
Score = 29.6 bits (65), Expect = 3.8
Identities = 20/51 (39%), Positives = 25/51 (49%)
Query: 14 GPRGAGLPGARARGLLCSARPGQLPLRTPQAVALSSKSGLSRGRKVMLSAL 64
G RGAG ARA A G+ R P+A A + S ++ MLSAL
Sbjct: 79 GRRGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSAL 129
>gi|148762978 similar to CG15216-PA [Homo sapiens]
Length = 976
Score = 29.6 bits (65), Expect = 3.8
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 16/96 (16%)
Query: 162 GEMFMRPGKLFD-YFPKPYPNSEAARAANNGALPPDLSYIVRARHGGEDYVFSL-----L 215
G PG FD Y+P+PYP+ E +G P + + GE F +
Sbjct: 292 GSFAASPGPTFDAYYPRPYPSEEL-----SGPSPRRMG----GYYAGEVRTFPIQEPPSR 342
Query: 216 TGYCEPPTGVSLREGLYFNPYFPGQAIAMAPPIYTD 251
+ Y E P L G + P P +A + A P YT+
Sbjct: 343 SYYGEAPRAYGLPYGPRYVPEEP-RAHSTARPFYTE 377
>gi|61742829 disrupted in schizophrenia 1 isoform S [Homo sapiens]
Length = 678
Score = 28.9 bits (63), Expect = 6.5
Identities = 27/104 (25%), Positives = 38/104 (36%), Gaps = 12/104 (11%)
Query: 91 PPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCASCHSMDFVAYRHLVGVCYTEDEAKELAA 150
PP+ P SH SS + G + C R C + E AA
Sbjct: 196 PPTPPGSHSAFTSSFSFIRLSLGSAGERGEAEGCPPS-----REAESHCQSPQEMGAKAA 250
Query: 151 EVEVQDGPNEDGEMFMRPGKLFDYFPKPYPNSEAARAANNGALP 194
+ DGP+ED RP L +++ A+AA N + P
Sbjct: 251 SL---DGPHEDPRCLSRPFSLL----ATRVSADLAQAARNSSRP 287
>gi|61742827 disrupted in schizophrenia 1 isoform Es [Homo sapiens]
Length = 369
Score = 28.9 bits (63), Expect = 6.5
Identities = 27/104 (25%), Positives = 38/104 (36%), Gaps = 12/104 (11%)
Query: 91 PPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCASCHSMDFVAYRHLVGVCYTEDEAKELAA 150
PP+ P SH SS + G + C R C + E AA
Sbjct: 196 PPTPPGSHSAFTSSFSFIRLSLGSAGERGEAEGCPPS-----REAESHCQSPQEMGAKAA 250
Query: 151 EVEVQDGPNEDGEMFMRPGKLFDYFPKPYPNSEAARAANNGALP 194
+ DGP+ED RP L +++ A+AA N + P
Sbjct: 251 SL---DGPHEDPRCLSRPFSLL----ATRVSADLAQAARNSSRP 287
>gi|61742825 disrupted in schizophrenia 1 isoform Lv [Homo sapiens]
Length = 832
Score = 28.9 bits (63), Expect = 6.5
Identities = 27/104 (25%), Positives = 38/104 (36%), Gaps = 12/104 (11%)
Query: 91 PPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCASCHSMDFVAYRHLVGVCYTEDEAKELAA 150
PP+ P SH SS + G + C R C + E AA
Sbjct: 196 PPTPPGSHSAFTSSFSFIRLSLGSAGERGEAEGCPPS-----REAESHCQSPQEMGAKAA 250
Query: 151 EVEVQDGPNEDGEMFMRPGKLFDYFPKPYPNSEAARAANNGALP 194
+ DGP+ED RP L +++ A+AA N + P
Sbjct: 251 SL---DGPHEDPRCLSRPFSLL----ATRVSADLAQAARNSSRP 287
>gi|61742823 disrupted in schizophrenia 1 isoform L [Homo sapiens]
Length = 854
Score = 28.9 bits (63), Expect = 6.5
Identities = 27/104 (25%), Positives = 38/104 (36%), Gaps = 12/104 (11%)
Query: 91 PPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCASCHSMDFVAYRHLVGVCYTEDEAKELAA 150
PP+ P SH SS + G + C R C + E AA
Sbjct: 196 PPTPPGSHSAFTSSFSFIRLSLGSAGERGEAEGCPPS-----REAESHCQSPQEMGAKAA 250
Query: 151 EVEVQDGPNEDGEMFMRPGKLFDYFPKPYPNSEAARAANNGALP 194
+ DGP+ED RP L +++ A+AA N + P
Sbjct: 251 SL---DGPHEDPRCLSRPFSLL----ATRVSADLAQAARNSSRP 287
>gi|169210212 PREDICTED: hypothetical protein [Homo sapiens]
Length = 204
Score = 28.9 bits (63), Expect = 6.5
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 10 GVVLGPRGAGLPGARARGLLCSARPGQLPLR 40
GV P G+ +PG R CS RPG LR
Sbjct: 73 GVARAPHGSRIPGRCRRSPRCSRRPGGSRLR 103
>gi|169210418 PREDICTED: hypothetical protein [Homo sapiens]
Length = 204
Score = 28.9 bits (63), Expect = 6.5
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 10 GVVLGPRGAGLPGARARGLLCSARPGQLPLR 40
GV P G+ +PG R CS RPG LR
Sbjct: 73 GVARAPHGSRIPGRCRRSPRCSRRPGGSRLR 103
>gi|169209848 PREDICTED: hypothetical protein [Homo sapiens]
Length = 204
Score = 28.9 bits (63), Expect = 6.5
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 10 GVVLGPRGAGLPGARARGLLCSARPGQLPLR 40
GV P G+ +PG R CS RPG LR
Sbjct: 73 GVARAPHGSRIPGRCRRSPRCSRRPGGSRLR 103
>gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens]
Length = 1759
Score = 28.9 bits (63), Expect = 6.5
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 2 AAAAASLRGVVLGPRGAGLPGARARGLLCSARPGQLPLRTPQAVALSSKSGL 53
A+ AA+ GP P ++ GLL PG +PL A+ALS+ SGL
Sbjct: 749 ASLAAATAATEAGPSATKPPNSKISGLLPQGLPGSIPL----ALALSN-SGL 795
>gi|119709822 castor homolog 1, zinc finger isoform b [Homo sapiens]
Length = 1166
Score = 28.9 bits (63), Expect = 6.5
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 2 AAAAASLRGVVLGPRGAGLPGARARGLLCSARPGQLPLRTPQAVALSSKSGL 53
A+ AA+ GP P ++ GLL PG +PL A+ALS+ SGL
Sbjct: 749 ASLAAATAATEAGPSATKPPNSKISGLLPQGLPGSIPL----ALALSN-SGL 795
>gi|112807221 N-acetylgalactosaminyltransferase 12 [Homo sapiens]
Length = 581
Score = 28.5 bits (62), Expect = 8.5
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 53 LSRGRKVMLSALGMLAAGGAGLAVALHSAVSASDLELHPPSYP 95
L RGR+ +L L +LA G G + A E PP P
Sbjct: 14 LRRGREALLVLLALLALAGLGSVLRAQRGAGAGAAEPGPPRTP 56
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,350,279
Number of Sequences: 37866
Number of extensions: 683953
Number of successful extensions: 1721
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1709
Number of HSP's gapped (non-prelim): 24
length of query: 325
length of database: 18,247,518
effective HSP length: 102
effective length of query: 223
effective length of database: 14,385,186
effective search space: 3207896478
effective search space used: 3207896478
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.