Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 208879465
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|208879465 voltage-dependent anion channel 3 isoform a [Homo
sapiens]
(284 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|208879465 voltage-dependent anion channel 3 isoform a [Homo s... 583 e-167
gi|25188179 voltage-dependent anion channel 3 isoform b [Homo sa... 577 e-165
gi|42476281 voltage-dependent anion channel 2 [Homo sapiens] 442 e-124
gi|113412878 PREDICTED: similar to voltage-dependent anion chann... 437 e-123
gi|169164151 PREDICTED: similar to voltage-dependent anion chann... 434 e-122
gi|169163967 PREDICTED: similar to voltage-dependent anion chann... 432 e-121
gi|4507879 voltage-dependent anion channel 1 [Homo sapiens] 404 e-113
gi|46049092 nebulin-related anchoring protein isoform C [Homo sa... 29 5.4
gi|46049105 nebulin-related anchoring protein isoform S [Homo sa... 29 5.4
gi|221316699 maltase-glucoamylase [Homo sapiens] 28 9.1
gi|169171979 PREDICTED: similar to sucrase-isomaltase [Homo sapi... 28 9.1
gi|110611231 chloride channel accessory 1 precursor [Homo sapiens] 28 9.1
>gi|208879465 voltage-dependent anion channel 3 isoform a [Homo
sapiens]
Length = 284
Score = 583 bits (1504), Expect = e-167
Identities = 284/284 (100%), Positives = 284/284 (100%)
Query: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLKTKSCSGVMEFSTSGHAYTDTGKASGNLE 60
MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLKTKSCSGVMEFSTSGHAYTDTGKASGNLE
Sbjct: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLKTKSCSGVMEFSTSGHAYTDTGKASGNLE 60
Query: 61 TKYKVCNYGLTFTQKWNTDNTLGTEISWENKLAEGLKLTLDTIFVPNTGKKSGKLKASYK 120
TKYKVCNYGLTFTQKWNTDNTLGTEISWENKLAEGLKLTLDTIFVPNTGKKSGKLKASYK
Sbjct: 61 TKYKVCNYGLTFTQKWNTDNTLGTEISWENKLAEGLKLTLDTIFVPNTGKKSGKLKASYK 120
Query: 121 RDCFSVGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQ 180
RDCFSVGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQ
Sbjct: 121 RDCFSVGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQ 180
Query: 181 LHTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYMLDCRTSLSAKVNN 240
LHTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYMLDCRTSLSAKVNN
Sbjct: 181 LHTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYMLDCRTSLSAKVNN 240
Query: 241 ASLIGLGYTQTLRPGVKLTLSALIDGKNFSAGGHKVGLGFELEA 284
ASLIGLGYTQTLRPGVKLTLSALIDGKNFSAGGHKVGLGFELEA
Sbjct: 241 ASLIGLGYTQTLRPGVKLTLSALIDGKNFSAGGHKVGLGFELEA 284
>gi|25188179 voltage-dependent anion channel 3 isoform b [Homo
sapiens]
Length = 283
Score = 577 bits (1487), Expect = e-165
Identities = 283/284 (99%), Positives = 283/284 (99%), Gaps = 1/284 (0%)
Query: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLKTKSCSGVMEFSTSGHAYTDTGKASGNLE 60
MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLKTKSCSGV EFSTSGHAYTDTGKASGNLE
Sbjct: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLKTKSCSGV-EFSTSGHAYTDTGKASGNLE 59
Query: 61 TKYKVCNYGLTFTQKWNTDNTLGTEISWENKLAEGLKLTLDTIFVPNTGKKSGKLKASYK 120
TKYKVCNYGLTFTQKWNTDNTLGTEISWENKLAEGLKLTLDTIFVPNTGKKSGKLKASYK
Sbjct: 60 TKYKVCNYGLTFTQKWNTDNTLGTEISWENKLAEGLKLTLDTIFVPNTGKKSGKLKASYK 119
Query: 121 RDCFSVGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQ 180
RDCFSVGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQ
Sbjct: 120 RDCFSVGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQ 179
Query: 181 LHTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYMLDCRTSLSAKVNN 240
LHTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYMLDCRTSLSAKVNN
Sbjct: 180 LHTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYMLDCRTSLSAKVNN 239
Query: 241 ASLIGLGYTQTLRPGVKLTLSALIDGKNFSAGGHKVGLGFELEA 284
ASLIGLGYTQTLRPGVKLTLSALIDGKNFSAGGHKVGLGFELEA
Sbjct: 240 ASLIGLGYTQTLRPGVKLTLSALIDGKNFSAGGHKVGLGFELEA 283
>gi|42476281 voltage-dependent anion channel 2 [Homo sapiens]
Length = 294
Score = 442 bits (1136), Expect = e-124
Identities = 208/284 (73%), Positives = 250/284 (88%), Gaps = 1/284 (0%)
Query: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLKTKSCSGVMEFSTSGHAYTDTGKASGNLE 60
MC P+Y DLGKAA+D+FNKG+GFG+VK+D+KTKSCSGV EFSTSG + TDTGK +G LE
Sbjct: 12 MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGV-EFSTSGSSNTDTGKVTGTLE 70
Query: 61 TKYKVCNYGLTFTQKWNTDNTLGTEISWENKLAEGLKLTLDTIFVPNTGKKSGKLKASYK 120
TKYK C YGLTFT+KWNTDNTLGTEI+ E+++ +GLKLT DT F PNTGKKSGK+K+SYK
Sbjct: 71 TKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSSYK 130
Query: 121 RDCFSVGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQ 180
R+C ++G +VD DF+GP I+G AV +EGWLAGYQM+FD+AKSKL++NNFA+GY+ DFQ
Sbjct: 131 RECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQ 190
Query: 181 LHTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYMLDCRTSLSAKVNN 240
LHT+VNDGTEFGGSIYQKV E ++TS+NLAWT+G+N TRFGIAAKY LD S+SAKVNN
Sbjct: 191 LHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNN 250
Query: 241 ASLIGLGYTQTLRPGVKLTLSALIDGKNFSAGGHKVGLGFELEA 284
+SLIG+GYTQTLRPGVKLTLSAL+DGK+ +AGGHKVGL ELEA
Sbjct: 251 SSLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKVGLALELEA 294
>gi|113412878 PREDICTED: similar to voltage-dependent anion channel
2 [Homo sapiens]
Length = 293
Score = 437 bits (1123), Expect = e-123
Identities = 208/284 (73%), Positives = 249/284 (87%), Gaps = 2/284 (0%)
Query: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLKTKSCSGVMEFSTSGHAYTDTGKASGNLE 60
MC P+Y DLGKAA+D+FNKG+GFG+VK+D+KTKSCSGV EFSTSG + TDTGK +G LE
Sbjct: 12 MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGV-EFSTSGSSNTDTGKVTGTLE 70
Query: 61 TKYKVCNYGLTFTQKWNTDNTLGTEISWENKLAEGLKLTLDTIFVPNTGKKSGKLKASYK 120
TKYK C YGLTFT+KWNTDNTLGTEI+ E+++ +GLKLT DT F PNTGKKSGK+K SYK
Sbjct: 71 TKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIK-SYK 129
Query: 121 RDCFSVGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQ 180
R+C ++G +VD DF+GP I+G AV +EGWLAGYQM+FD+AKSKL++NNFA+GY+ DFQ
Sbjct: 130 RECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQ 189
Query: 181 LHTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYMLDCRTSLSAKVNN 240
LHT+VNDGTEFGGSIYQKV E ++TS+NLAWT+G+N TRFGIAAKY LD S+SAKVNN
Sbjct: 190 LHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNN 249
Query: 241 ASLIGLGYTQTLRPGVKLTLSALIDGKNFSAGGHKVGLGFELEA 284
+SLIG+GYTQTLRPGVKLTLSAL+DGK+ +AGGHKVGL ELEA
Sbjct: 250 SSLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKVGLALELEA 293
>gi|169164151 PREDICTED: similar to voltage-dependent anion channel
2 [Homo sapiens]
Length = 293
Score = 434 bits (1117), Expect = e-122
Identities = 207/284 (72%), Positives = 248/284 (87%), Gaps = 2/284 (0%)
Query: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLKTKSCSGVMEFSTSGHAYTDTGKASGNLE 60
MC P+Y DLGKAA+D+FNKG+GFG+VK+D+KTKSCSGV EFSTSG + TDTGK +G LE
Sbjct: 12 MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGV-EFSTSGSSNTDTGKVTGTLE 70
Query: 61 TKYKVCNYGLTFTQKWNTDNTLGTEISWENKLAEGLKLTLDTIFVPNTGKKSGKLKASYK 120
TKYK C YGLT T+KWNTDNTLGTEI+ E+++ +GLKLT DT F PNTGKKSGK+K SYK
Sbjct: 71 TKYKWCEYGLTITEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIK-SYK 129
Query: 121 RDCFSVGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQ 180
R+C ++G +VD DF+GP I+G AV +EGWLAGYQM+FD+AKSKL++NNFA+GY+ DFQ
Sbjct: 130 RECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQ 189
Query: 181 LHTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYMLDCRTSLSAKVNN 240
LHT+VNDGTEFGGSIYQKV E ++TS+NLAWT+G+N TRFGIAAKY LD S+SAKVNN
Sbjct: 190 LHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNN 249
Query: 241 ASLIGLGYTQTLRPGVKLTLSALIDGKNFSAGGHKVGLGFELEA 284
+SLIG+GYTQTLRPGVKLTLSAL+DGK+ +AGGHKVGL ELEA
Sbjct: 250 SSLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKVGLALELEA 293
>gi|169163967 PREDICTED: similar to voltage-dependent anion channel
2 [Homo sapiens]
Length = 293
Score = 432 bits (1111), Expect = e-121
Identities = 206/284 (72%), Positives = 247/284 (86%), Gaps = 2/284 (0%)
Query: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLKTKSCSGVMEFSTSGHAYTDTGKASGNLE 60
MC P+Y DLGKAA+D+FNKG+GFG+VK+D+KTKSCSGV EFSTSG + TDTGK +G LE
Sbjct: 12 MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGV-EFSTSGSSNTDTGKVTGTLE 70
Query: 61 TKYKVCNYGLTFTQKWNTDNTLGTEISWENKLAEGLKLTLDTIFVPNTGKKSGKLKASYK 120
TKYK C YGLT T+KWNTDNTLGTEI+ E+++ +GLKLT DT F PNTGKKSGK+K SYK
Sbjct: 71 TKYKWCEYGLTITEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIK-SYK 129
Query: 121 RDCFSVGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQ 180
R+C ++G +VD DF+GP I+G AV +EGWLAGYQM+FD+AKSKL++NNFA+GY+ DFQ
Sbjct: 130 RECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQ 189
Query: 181 LHTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYMLDCRTSLSAKVNN 240
LHT+VNDGTEFGGSIYQKV E ++TS+NLAWT+G+N TRFGIAAKY D S+SAKVNN
Sbjct: 190 LHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQSDPTASISAKVNN 249
Query: 241 ASLIGLGYTQTLRPGVKLTLSALIDGKNFSAGGHKVGLGFELEA 284
+SLIG+GYTQTLRPGVKLTLSAL+DGK+ +AGGHKVGL ELEA
Sbjct: 250 SSLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKVGLALELEA 293
>gi|4507879 voltage-dependent anion channel 1 [Homo sapiens]
Length = 283
Score = 404 bits (1039), Expect = e-113
Identities = 191/284 (67%), Positives = 242/284 (85%), Gaps = 1/284 (0%)
Query: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLKTKSCSGVMEFSTSGHAYTDTGKASGNLE 60
M PTY DLGK+A+DVF KGYGFG++K+DLKTKS +G +EF++SG A T+T K +G+LE
Sbjct: 1 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENG-LEFTSSGSANTETTKVTGSLE 59
Query: 61 TKYKVCNYGLTFTQKWNTDNTLGTEISWENKLAEGLKLTLDTIFVPNTGKKSGKLKASYK 120
TKY+ YGLTFT+KWNTDNTLGTEI+ E++LA GLKLT D+ F PNTGKK+ K+K YK
Sbjct: 60 TKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYK 119
Query: 121 RDCFSVGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQ 180
R+ ++G ++D D +GP+I G VL +EGWLAGYQM+F+TAKS+++Q+NFA+GYK +FQ
Sbjct: 120 REHINLGCDMDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQ 179
Query: 181 LHTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYMLDCRTSLSAKVNN 240
LHT+VNDGTEFGGSIYQKVN+K+ET++NLAWTAG++NTRFGIAAKY +D SAKVNN
Sbjct: 180 LHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNN 239
Query: 241 ASLIGLGYTQTLRPGVKLTLSALIDGKNFSAGGHKVGLGFELEA 284
+SLIGLGYTQTL+PG+KLTLSAL+DGKN +AGGHK+GLG E +A
Sbjct: 240 SSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 283
>gi|46049092 nebulin-related anchoring protein isoform C [Homo
sapiens]
Length = 1695
Score = 28.9 bits (63), Expect = 5.4
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 87 SWENKLAEGLKLTLDTI-FVPNTGKKSGKLKASYKRD 122
SWEN+ A+G +L LD++ F+ K+ + YK D
Sbjct: 754 SWENQKAKGFELRLDSLTFLAAKAKRDLASEVKYKED 790
>gi|46049105 nebulin-related anchoring protein isoform S [Homo
sapiens]
Length = 1730
Score = 28.9 bits (63), Expect = 5.4
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 87 SWENKLAEGLKLTLDTI-FVPNTGKKSGKLKASYKRD 122
SWEN+ A+G +L LD++ F+ K+ + YK D
Sbjct: 789 SWENQKAKGFELRLDSLTFLAAKAKRDLASEVKYKED 825
>gi|221316699 maltase-glucoamylase [Homo sapiens]
Length = 1857
Score = 28.1 bits (61), Expect = 9.1
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 30 DLKTKSCSGVMEFSTSGHAYTDTGKASGNLETKYKVCNYGL---TFTQKWNTDNTLGTE- 85
D KS G+MEFS G +YT + +Y++C + F NT+GT
Sbjct: 1532 DQLKKSIIGMMEFSLFGISYTGADICGFFQDAEYEMCVRWMQLGAFYPFSRNHNTIGTRR 1591
Query: 86 ---ISWE 89
+SW+
Sbjct: 1592 QDPVSWD 1598
>gi|169171979 PREDICTED: similar to sucrase-isomaltase [Homo sapiens]
Length = 1492
Score = 28.1 bits (61), Expect = 9.1
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 30 DLKTKSCSGVMEFSTSGHAYTDTGKASGNLETKYKVCNYGL---TFTQKWNTDNTLGTE- 85
D KS G+MEFS G +YT + +Y++C + F NT+GT
Sbjct: 1167 DQLKKSIIGMMEFSLFGISYTGADICGFFQDAEYEMCVRWMQLGAFYPFSRNHNTIGTRR 1226
Query: 86 ---ISWE 89
+SW+
Sbjct: 1227 QDPVSWD 1233
>gi|110611231 chloride channel accessory 1 precursor [Homo sapiens]
Length = 914
Score = 28.1 bits (61), Expect = 9.1
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 9/47 (19%)
Query: 207 INLAWTAGSNNTRFGIAAKYMLDCRTSL---------SAKVNNASLI 244
INL WTA ++ G A KY++ TS+ S +VN +LI
Sbjct: 769 INLTWTAPGDDYDHGTAHKYIIRISTSILDLRDKFNESLQVNTTALI 815
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,072,286
Number of Sequences: 37866
Number of extensions: 383361
Number of successful extensions: 653
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 630
Number of HSP's gapped (non-prelim): 14
length of query: 284
length of database: 18,247,518
effective HSP length: 101
effective length of query: 183
effective length of database: 14,423,052
effective search space: 2639418516
effective search space used: 2639418516
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.