Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 208610019
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|208610019 hypothetical protein LOC114926 [Homo sapiens]
(107 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|208610019 hypothetical protein LOC114926 [Homo sapiens] 217 2e-57
gi|208610017 hypothetical protein LOC114926 [Homo sapiens] 217 2e-57
gi|208610015 hypothetical protein LOC114926 [Homo sapiens] 217 2e-57
gi|208610013 hypothetical protein LOC114926 [Homo sapiens] 217 2e-57
gi|110349756 zygin 2 isoform 2 [Homo sapiens] 35 0.013
gi|110349754 zygin 2 isoform 1 [Homo sapiens] 35 0.013
gi|13236587 transmembrane protein 43 [Homo sapiens] 32 0.11
gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens] 32 0.14
gi|163644313 calcium and integrin binding 1 [Homo sapiens] 28 1.2
gi|32698855 hypothetical protein LOC144809 [Homo sapiens] 27 3.5
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens] 27 3.5
gi|7019319 activator of basal transcription 1 [Homo sapiens] 26 7.9
>gi|208610019 hypothetical protein LOC114926 [Homo sapiens]
Length = 107
Score = 217 bits (552), Expect = 2e-57
Identities = 107/107 (100%), Positives = 107/107 (100%)
Query: 1 MAGGYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTE 60
MAGGYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTE
Sbjct: 1 MAGGYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTE 60
Query: 61 ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE
Sbjct: 61 ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
>gi|208610017 hypothetical protein LOC114926 [Homo sapiens]
Length = 107
Score = 217 bits (552), Expect = 2e-57
Identities = 107/107 (100%), Positives = 107/107 (100%)
Query: 1 MAGGYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTE 60
MAGGYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTE
Sbjct: 1 MAGGYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTE 60
Query: 61 ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE
Sbjct: 61 ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
>gi|208610015 hypothetical protein LOC114926 [Homo sapiens]
Length = 107
Score = 217 bits (552), Expect = 2e-57
Identities = 107/107 (100%), Positives = 107/107 (100%)
Query: 1 MAGGYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTE 60
MAGGYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTE
Sbjct: 1 MAGGYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTE 60
Query: 61 ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE
Sbjct: 61 ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
>gi|208610013 hypothetical protein LOC114926 [Homo sapiens]
Length = 107
Score = 217 bits (552), Expect = 2e-57
Identities = 107/107 (100%), Positives = 107/107 (100%)
Query: 1 MAGGYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTE 60
MAGGYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTE
Sbjct: 1 MAGGYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTE 60
Query: 61 ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE
Sbjct: 61 ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
>gi|110349756 zygin 2 isoform 2 [Homo sapiens]
Length = 380
Score = 35.0 bits (79), Expect = 0.013
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 20 EAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTEETLSEPNFYDTISKIRLRQ 79
E WN T+ Y V+ V + K + R + + ++ +E+ +S+ +DT LR+
Sbjct: 89 EIWNALTDNYGNVMPVDW------KSSHTRTLHLLTLNLSEKGVSDSLLFDTSDDEELRE 142
Query: 80 QLEMYSISRKYDYQQPQNQADSVQLSLE 107
QL+M+SI +P AD V +E
Sbjct: 143 QLDMHSIIVSCVNDEPLFTADQVIEEIE 170
>gi|110349754 zygin 2 isoform 1 [Homo sapiens]
Length = 353
Score = 35.0 bits (79), Expect = 0.013
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 20 EAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTEETLSEPNFYDTISKIRLRQ 79
E WN T+ Y V+ V + K + R + + ++ +E+ +S+ +DT LR+
Sbjct: 89 EIWNALTDNYGNVMPVDW------KSSHTRTLHLLTLNLSEKGVSDSLLFDTSDDEELRE 142
Query: 80 QLEMYSISRKYDYQQPQNQADSVQLSLE 107
QL+M+SI +P AD V +E
Sbjct: 143 QLDMHSIIVSCVNDEPLFTADQVIEEIE 170
>gi|13236587 transmembrane protein 43 [Homo sapiens]
Length = 400
Score = 32.0 bits (71), Expect = 0.11
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 43 AKRNKRRIMRIFSVPPTEETLSEPNFYDTISKIRLRQQLEMY 84
A N+ R++ I T + LS+PN+ + ++LR+ +EMY
Sbjct: 81 APENEGRLVHIIGALRTSKLLSDPNYGVHLPAVKLRRHVEMY 122
>gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens]
Length = 1378
Score = 31.6 bits (70), Expect = 0.14
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 28 VYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTEETLSEPNFYDTISKIRLRQQLE 82
V + +L G F+ AKR ++ R+ S P + N ++ +RL+QQLE
Sbjct: 246 VVIAQVLQDLGDFLAAKRALKKAYRLGSQKPVQRAAICQNLQHVLAVVRLQQQLE 300
>gi|163644313 calcium and integrin binding 1 [Homo sapiens]
Length = 191
Score = 28.5 bits (62), Expect = 1.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 47 KRRIMRIFSVPPTEETLSEPNFYDTIS 73
K RI R+FS P +++LS +F D +S
Sbjct: 70 KERICRVFSTSPAKDSLSFEDFLDLLS 96
>gi|32698855 hypothetical protein LOC144809 [Homo sapiens]
Length = 139
Score = 26.9 bits (58), Expect = 3.5
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 45 RNKRRIMRIFSVPPTEETLSEPNFYDT--ISKIRLRQQLEMYSISRKYDYQQPQNQA 99
+N +R ++++VP P+ YDT + + QQ YSI R Y+ +PQ +A
Sbjct: 3 QNWKRQQKLWNVPQLPFIRVPPSIYDTSLLKALNQGQQRYFYSIMRIYN-SRPQWEA 58
>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
Length = 2240
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 54 FSVPPTEETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQ 96
F V P E+ L EP+ S+ R R++ + SR+ D+ +P+
Sbjct: 2091 FDVGPKEKPLEEPDAQGRASEDRRRERERGRNWSRERDWDRPR 2133
>gi|7019319 activator of basal transcription 1 [Homo sapiens]
Length = 272
Score = 25.8 bits (55), Expect = 7.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 43 AKRNKRRIMRIFSVPPTEETLSEPN 67
A+ NK + RIF PP E++ P+
Sbjct: 243 ARSNKGLLARIFGAPPPSESMEGPS 267
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,704,707
Number of Sequences: 37866
Number of extensions: 121402
Number of successful extensions: 284
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 273
Number of HSP's gapped (non-prelim): 12
length of query: 107
length of database: 18,247,518
effective HSP length: 77
effective length of query: 30
effective length of database: 15,331,836
effective search space: 459955080
effective search space used: 459955080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.