Guide to the Human Genome
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Search of human proteins with 208610013

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|208610013 hypothetical protein LOC114926 [Homo sapiens]
         (107 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|208610019 hypothetical protein LOC114926 [Homo sapiens]            217   2e-57
gi|208610017 hypothetical protein LOC114926 [Homo sapiens]            217   2e-57
gi|208610015 hypothetical protein LOC114926 [Homo sapiens]            217   2e-57
gi|208610013 hypothetical protein LOC114926 [Homo sapiens]            217   2e-57
gi|110349756 zygin 2 isoform 2 [Homo sapiens]                          35   0.013
gi|110349754 zygin 2 isoform 1 [Homo sapiens]                          35   0.013
gi|13236587 transmembrane protein 43 [Homo sapiens]                    32   0.11 
gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens]        32   0.14 
gi|163644313 calcium and integrin binding 1 [Homo sapiens]             28   1.2  
gi|32698855 hypothetical protein LOC144809 [Homo sapiens]              27   3.5  
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]       27   3.5  
gi|7019319 activator of basal transcription 1 [Homo sapiens]           26   7.9  

>gi|208610019 hypothetical protein LOC114926 [Homo sapiens]
          Length = 107

 Score =  217 bits (552), Expect = 2e-57
 Identities = 107/107 (100%), Positives = 107/107 (100%)

Query: 1   MAGGYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTE 60
           MAGGYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTE
Sbjct: 1   MAGGYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTE 60

Query: 61  ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
           ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE
Sbjct: 61  ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107


>gi|208610017 hypothetical protein LOC114926 [Homo sapiens]
          Length = 107

 Score =  217 bits (552), Expect = 2e-57
 Identities = 107/107 (100%), Positives = 107/107 (100%)

Query: 1   MAGGYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTE 60
           MAGGYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTE
Sbjct: 1   MAGGYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTE 60

Query: 61  ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
           ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE
Sbjct: 61  ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107


>gi|208610015 hypothetical protein LOC114926 [Homo sapiens]
          Length = 107

 Score =  217 bits (552), Expect = 2e-57
 Identities = 107/107 (100%), Positives = 107/107 (100%)

Query: 1   MAGGYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTE 60
           MAGGYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTE
Sbjct: 1   MAGGYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTE 60

Query: 61  ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
           ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE
Sbjct: 61  ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107


>gi|208610013 hypothetical protein LOC114926 [Homo sapiens]
          Length = 107

 Score =  217 bits (552), Expect = 2e-57
 Identities = 107/107 (100%), Positives = 107/107 (100%)

Query: 1   MAGGYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTE 60
           MAGGYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTE
Sbjct: 1   MAGGYGVMGDDGSIDYTVHEAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTE 60

Query: 61  ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107
           ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE
Sbjct: 61  ETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQNQADSVQLSLE 107


>gi|110349756 zygin 2 isoform 2 [Homo sapiens]
          Length = 380

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 6/88 (6%)

Query: 20  EAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTEETLSEPNFYDTISKIRLRQ 79
           E WN  T+ Y  V+ V +      K +  R + + ++  +E+ +S+   +DT     LR+
Sbjct: 89  EIWNALTDNYGNVMPVDW------KSSHTRTLHLLTLNLSEKGVSDSLLFDTSDDEELRE 142

Query: 80  QLEMYSISRKYDYQQPQNQADSVQLSLE 107
           QL+M+SI       +P   AD V   +E
Sbjct: 143 QLDMHSIIVSCVNDEPLFTADQVIEEIE 170


>gi|110349754 zygin 2 isoform 1 [Homo sapiens]
          Length = 353

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 6/88 (6%)

Query: 20  EAWNEATNVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTEETLSEPNFYDTISKIRLRQ 79
           E WN  T+ Y  V+ V +      K +  R + + ++  +E+ +S+   +DT     LR+
Sbjct: 89  EIWNALTDNYGNVMPVDW------KSSHTRTLHLLTLNLSEKGVSDSLLFDTSDDEELRE 142

Query: 80  QLEMYSISRKYDYQQPQNQADSVQLSLE 107
           QL+M+SI       +P   AD V   +E
Sbjct: 143 QLDMHSIIVSCVNDEPLFTADQVIEEIE 170


>gi|13236587 transmembrane protein 43 [Homo sapiens]
          Length = 400

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 14/42 (33%), Positives = 25/42 (59%)

Query: 43  AKRNKRRIMRIFSVPPTEETLSEPNFYDTISKIRLRQQLEMY 84
           A  N+ R++ I     T + LS+PN+   +  ++LR+ +EMY
Sbjct: 81  APENEGRLVHIIGALRTSKLLSDPNYGVHLPAVKLRRHVEMY 122


>gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens]
          Length = 1378

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 17/55 (30%), Positives = 28/55 (50%)

Query: 28  VYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTEETLSEPNFYDTISKIRLRQQLE 82
           V +  +L   G F+ AKR  ++  R+ S  P +      N    ++ +RL+QQLE
Sbjct: 246 VVIAQVLQDLGDFLAAKRALKKAYRLGSQKPVQRAAICQNLQHVLAVVRLQQQLE 300


>gi|163644313 calcium and integrin binding 1 [Homo sapiens]
          Length = 191

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 47 KRRIMRIFSVPPTEETLSEPNFYDTIS 73
          K RI R+FS  P +++LS  +F D +S
Sbjct: 70 KERICRVFSTSPAKDSLSFEDFLDLLS 96


>gi|32698855 hypothetical protein LOC144809 [Homo sapiens]
          Length = 139

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 45 RNKRRIMRIFSVPPTEETLSEPNFYDT--ISKIRLRQQLEMYSISRKYDYQQPQNQA 99
          +N +R  ++++VP        P+ YDT  +  +   QQ   YSI R Y+  +PQ +A
Sbjct: 3  QNWKRQQKLWNVPQLPFIRVPPSIYDTSLLKALNQGQQRYFYSIMRIYN-SRPQWEA 58


>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
          Length = 2240

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)

Query: 54   FSVPPTEETLSEPNFYDTISKIRLRQQLEMYSISRKYDYQQPQ 96
            F V P E+ L EP+     S+ R R++    + SR+ D+ +P+
Sbjct: 2091 FDVGPKEKPLEEPDAQGRASEDRRRERERGRNWSRERDWDRPR 2133


>gi|7019319 activator of basal transcription 1 [Homo sapiens]
          Length = 272

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 43  AKRNKRRIMRIFSVPPTEETLSEPN 67
           A+ NK  + RIF  PP  E++  P+
Sbjct: 243 ARSNKGLLARIFGAPPPSESMEGPS 267


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,704,707
Number of Sequences: 37866
Number of extensions: 121402
Number of successful extensions: 284
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 273
Number of HSP's gapped (non-prelim): 12
length of query: 107
length of database: 18,247,518
effective HSP length: 77
effective length of query: 30
effective length of database: 15,331,836
effective search space: 459955080
effective search space used: 459955080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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