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Search of human proteins with 113422487
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113422487 PREDICTED: similar to beta-defensin 130 [Homo
sapiens]
(78 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169202991 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 168 8e-43
gi|169203490 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 168 8e-43
gi|113422487 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 168 8e-43
gi|169172908 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 164 2e-41
gi|83699414 beta-defensin 130 [Homo sapiens] 164 2e-41
gi|239753810 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 155 9e-39
gi|239748374 PREDICTED: hypothetical protein XP_002346650 [Homo ... 155 9e-39
gi|239742299 PREDICTED: hypothetical protein XP_002342487 [Homo ... 155 9e-39
gi|239742274 PREDICTED: hypothetical protein XP_002342470 [Homo ... 74 3e-14
gi|239743480 PREDICTED: hypothetical protein XP_002342858 [Homo ... 72 1e-13
gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo ... 70 4e-13
gi|239754319 PREDICTED: defensin, beta 133 [Homo sapiens] 31 0.24
gi|239748864 PREDICTED: defensin, beta 133 [Homo sapiens] 31 0.24
gi|239742893 PREDICTED: beta-defensin 133 [Homo sapiens] 31 0.24
gi|109134351 zinc finger and BTB domain containing 44 [Homo sapi... 27 4.6
gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo ... 26 6.0
gi|110825974 ADAM metallopeptidase with thrombospondin type 1 mo... 26 7.9
>gi|169202991 PREDICTED: similar to beta-defensin 130 [Homo
sapiens]
Length = 78
Score = 168 bits (426), Expect = 8e-43
Identities = 78/78 (100%), Positives = 78/78 (100%)
Query: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCR 60
MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCR
Sbjct: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCR 60
Query: 61 RWWILEPYPTPVPKGKSP 78
RWWILEPYPTPVPKGKSP
Sbjct: 61 RWWILEPYPTPVPKGKSP 78
>gi|169203490 PREDICTED: similar to beta-defensin 130 [Homo
sapiens]
Length = 78
Score = 168 bits (426), Expect = 8e-43
Identities = 78/78 (100%), Positives = 78/78 (100%)
Query: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCR 60
MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCR
Sbjct: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCR 60
Query: 61 RWWILEPYPTPVPKGKSP 78
RWWILEPYPTPVPKGKSP
Sbjct: 61 RWWILEPYPTPVPKGKSP 78
>gi|113422487 PREDICTED: similar to beta-defensin 130 [Homo
sapiens]
Length = 78
Score = 168 bits (426), Expect = 8e-43
Identities = 78/78 (100%), Positives = 78/78 (100%)
Query: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCR 60
MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCR
Sbjct: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCR 60
Query: 61 RWWILEPYPTPVPKGKSP 78
RWWILEPYPTPVPKGKSP
Sbjct: 61 RWWILEPYPTPVPKGKSP 78
>gi|169172908 PREDICTED: similar to beta-defensin 130 [Homo
sapiens]
Length = 79
Score = 164 bits (414), Expect = 2e-41
Identities = 78/79 (98%), Positives = 78/79 (98%), Gaps = 1/79 (1%)
Query: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59
MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK C
Sbjct: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60
Query: 60 RRWWILEPYPTPVPKGKSP 78
RRWWILEPYPTPVPKGKSP
Sbjct: 61 RRWWILEPYPTPVPKGKSP 79
>gi|83699414 beta-defensin 130 [Homo sapiens]
Length = 79
Score = 164 bits (414), Expect = 2e-41
Identities = 78/79 (98%), Positives = 78/79 (98%), Gaps = 1/79 (1%)
Query: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59
MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK C
Sbjct: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60
Query: 60 RRWWILEPYPTPVPKGKSP 78
RRWWILEPYPTPVPKGKSP
Sbjct: 61 RRWWILEPYPTPVPKGKSP 79
>gi|239753810 PREDICTED: similar to beta-defensin 130 [Homo sapiens]
Length = 128
Score = 155 bits (391), Expect = 9e-39
Identities = 76/79 (96%), Positives = 76/79 (96%), Gaps = 2/79 (2%)
Query: 2 KLHSLISVLLLFVTLIPKGK-TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59
KLHSLISVLLLFVTLIPK K TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK C
Sbjct: 50 KLHSLISVLLLFVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 109
Query: 60 RRWWILEPYPTPVPKGKSP 78
RRWWILEPYPTPVPKGKSP
Sbjct: 110 RRWWILEPYPTPVPKGKSP 128
>gi|239748374 PREDICTED: hypothetical protein XP_002346650 [Homo
sapiens]
Length = 128
Score = 155 bits (391), Expect = 9e-39
Identities = 76/79 (96%), Positives = 76/79 (96%), Gaps = 2/79 (2%)
Query: 2 KLHSLISVLLLFVTLIPKGK-TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59
KLHSLISVLLLFVTLIPK K TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK C
Sbjct: 50 KLHSLISVLLLFVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 109
Query: 60 RRWWILEPYPTPVPKGKSP 78
RRWWILEPYPTPVPKGKSP
Sbjct: 110 RRWWILEPYPTPVPKGKSP 128
>gi|239742299 PREDICTED: hypothetical protein XP_002342487 [Homo
sapiens]
Length = 128
Score = 155 bits (391), Expect = 9e-39
Identities = 76/79 (96%), Positives = 76/79 (96%), Gaps = 2/79 (2%)
Query: 2 KLHSLISVLLLFVTLIPKGK-TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59
KLHSLISVLLLFVTLIPK K TGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK C
Sbjct: 50 KLHSLISVLLLFVTLIPKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 109
Query: 60 RRWWILEPYPTPVPKGKSP 78
RRWWILEPYPTPVPKGKSP
Sbjct: 110 RRWWILEPYPTPVPKGKSP 128
>gi|239742274 PREDICTED: hypothetical protein XP_002342470 [Homo
sapiens]
Length = 87
Score = 73.6 bits (179), Expect = 3e-14
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59
M+LH L+ +LL + L P K G+ P + C+ L GVCR +C ++D IG C K C
Sbjct: 1 MRLHLLLLILLFSILLSPGNKGGLGPAEGHCLNLSGVCRRDVCKVVEDQIGACRRKMKCC 60
Query: 60 RRWWILEPYPTPV 72
R WWIL P PTP+
Sbjct: 61 RAWWILMPIPTPL 73
>gi|239743480 PREDICTED: hypothetical protein XP_002342858 [Homo
sapiens]
Length = 87
Score = 72.0 bits (175), Expect = 1e-13
Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59
M+LH L+ +LLLF L+ + G+ P + C+ L GVCR +C+ ++D IG C K C
Sbjct: 1 MRLHLLLLILLLFSILLSPVRGGLGPAEGHCLNLFGVCRTDVCNIVEDQIGACRRRMKCC 60
Query: 60 RRWWILEPYPTPV 72
R WWIL P PTP+
Sbjct: 61 RAWWILMPIPTPL 73
>gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo
sapiens]
Length = 192
Score = 70.1 bits (170), Expect = 4e-13
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59
++LH L+ +LLLF L+ + + P + C++L GVCR +C ++D IG C K C
Sbjct: 64 VRLHVLLLILLLFSILLSPVRGALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRRMKCC 123
Query: 60 RRWWILEPYPTPV 72
R WWIL P PTP+
Sbjct: 124 RAWWILMPIPTPL 136
>gi|239754319 PREDICTED: defensin, beta 133 [Homo sapiens]
Length = 61
Score = 30.8 bits (68), Expect = 0.24
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNE 55
MK+H + VL F+ I + C ++G CR + C + IG C +
Sbjct: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHE-CHDFEKPIGFCTK 54
>gi|239748864 PREDICTED: defensin, beta 133 [Homo sapiens]
Length = 61
Score = 30.8 bits (68), Expect = 0.24
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNE 55
MK+H + VL F+ I + C ++G CR + C + IG C +
Sbjct: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHE-CHDFEKPIGFCTK 54
>gi|239742893 PREDICTED: beta-defensin 133 [Homo sapiens]
Length = 61
Score = 30.8 bits (68), Expect = 0.24
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNE 55
MK+H + VL F+ I + C ++G CR + C + IG C +
Sbjct: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHE-CHDFEKPIGFCTK 54
>gi|109134351 zinc finger and BTB domain containing 44 [Homo
sapiens]
Length = 453
Score = 26.6 bits (57), Expect = 4.6
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 43 CSTLDDTIGICNEGKKCRRWWILEPYPTPVPKG 75
CS ++ TI +C E ++ R+ +I+ +PV G
Sbjct: 167 CSVVERTIPVCRESRRKRKSYIVMSPESPVKCG 199
>gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo
sapiens]
Length = 316
Score = 26.2 bits (56), Expect = 6.0
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 59 CRRWWILEPYPTPVPKG 75
CR W+L P P P P G
Sbjct: 229 CRSRWVLAPPPPPAPPG 245
>gi|110825974 ADAM metallopeptidase with thrombospondin type 1 motif,
2 isoform 1 preproprotein [Homo sapiens]
Length = 1211
Score = 25.8 bits (55), Expect = 7.9
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 39 RDKLCSTLDDTIGICNE 55
R LC T DD+ GIC E
Sbjct: 998 RPVLCRTADDSFGICQE 1014
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.143 0.475
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,878,425
Number of Sequences: 37866
Number of extensions: 171417
Number of successful extensions: 332
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 307
Number of HSP's gapped (non-prelim): 17
length of query: 78
length of database: 18,247,518
effective HSP length: 50
effective length of query: 28
effective length of database: 16,354,218
effective search space: 457918104
effective search space used: 457918104
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.