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Search of human proteins with 20149688
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|20149688 TRM2 tRNA methyltransferase 2 homolog B [Homo
sapiens]
(504 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|20149688 TRM2 tRNA methyltransferase 2 homolog B [Homo sapiens] 1029 0.0
gi|34222389 HpaII tiny fragments locus 9C [Homo sapiens] 311 1e-84
gi|51173878 HpaII tiny fragments locus 9C [Homo sapiens] 311 1e-84
gi|223556010 protein arginine methyltransferase 3 isoform 3 [Hom... 35 0.21
gi|223556008 protein arginine methyltransferase 3 isoform 2 [Hom... 35 0.21
gi|44771198 protein arginine methyltransferase 3 isoform 1 [Homo... 35 0.21
gi|212549782 caspase 8 associated protein 2 [Homo sapiens] 31 3.0
gi|6912288 caspase 8 associated protein 2 [Homo sapiens] 31 3.0
gi|212549532 caspase 8 associated protein 2 [Homo sapiens] 31 3.0
gi|7705409 HemK methyltransferase family member 1 [Homo sapiens] 31 3.0
gi|46255049 HMT1 hnRNP methyltransferase-like 1 [Homo sapiens] 30 5.1
gi|46255047 HMT1 hnRNP methyltransferase-like 1 [Homo sapiens] 30 5.1
gi|31340735 zinc finger protein 445 [Homo sapiens] 30 5.1
gi|239757639 PREDICTED: similar to collagen, type I, alpha 2 [Ho... 30 6.7
gi|239746652 PREDICTED: hypothetical protein [Homo sapiens] 30 6.7
gi|238908508 leucine-rich repeat and death domain-containing pro... 29 8.8
>gi|20149688 TRM2 tRNA methyltransferase 2 homolog B [Homo sapiens]
Length = 504
Score = 1029 bits (2661), Expect = 0.0
Identities = 504/504 (100%), Positives = 504/504 (100%)
Query: 1 MAGLKRRVPLHSLRYFISMVGLFSKPGLLPWYARNPPGWSQLFLGTVCKGDFTRVIATKC 60
MAGLKRRVPLHSLRYFISMVGLFSKPGLLPWYARNPPGWSQLFLGTVCKGDFTRVIATKC
Sbjct: 1 MAGLKRRVPLHSLRYFISMVGLFSKPGLLPWYARNPPGWSQLFLGTVCKGDFTRVIATKC 60
Query: 61 QKGQKSQKKPSHLGPLDGSWQERLADVVTPLWRLSYEEQLKVKFAAQKKILQRLESYIQM 120
QKGQKSQKKPSHLGPLDGSWQERLADVVTPLWRLSYEEQLKVKFAAQKKILQRLESYIQM
Sbjct: 61 QKGQKSQKKPSHLGPLDGSWQERLADVVTPLWRLSYEEQLKVKFAAQKKILQRLESYIQM 120
Query: 121 LNGVSVTTAVPKSERLSCLLHPIIPSPVINGYRNKSTFSVNRGPDGNPKTVGFYLGTWRD 180
LNGVSVTTAVPKSERLSCLLHPIIPSPVINGYRNKSTFSVNRGPDGNPKTVGFYLGTWRD
Sbjct: 121 LNGVSVTTAVPKSERLSCLLHPIIPSPVINGYRNKSTFSVNRGPDGNPKTVGFYLGTWRD 180
Query: 181 GNVVCVQSNHLKNIPEKHSQVAQYYEVFLRQSPLEPCLVFHEGGYWRELTVRTNSQGHTM 240
GNVVCVQSNHLKNIPEKHSQVAQYYEVFLRQSPLEPCLVFHEGGYWRELTVRTNSQGHTM
Sbjct: 181 GNVVCVQSNHLKNIPEKHSQVAQYYEVFLRQSPLEPCLVFHEGGYWRELTVRTNSQGHTM 240
Query: 241 AIITFHPQKLSQEELHVQKEIVKEFFIRGPGAACGLTSLYFQESTMTRCSHQQSPYQLLF 300
AIITFHPQKLSQEELHVQKEIVKEFFIRGPGAACGLTSLYFQESTMTRCSHQQSPYQLLF
Sbjct: 241 AIITFHPQKLSQEELHVQKEIVKEFFIRGPGAACGLTSLYFQESTMTRCSHQQSPYQLLF 300
Query: 301 GEPYIFEELLSLKIRISPDAFFQINTAGAEMLYRTVGELTGVNSDTILLDICCGTGVIGL 360
GEPYIFEELLSLKIRISPDAFFQINTAGAEMLYRTVGELTGVNSDTILLDICCGTGVIGL
Sbjct: 301 GEPYIFEELLSLKIRISPDAFFQINTAGAEMLYRTVGELTGVNSDTILLDICCGTGVIGL 360
Query: 361 SLAQHTSRVLGIELLEQAVEDARWTAAFNGITNSEFHTGQAEKILPGLLKSKEDGQSIVA 420
SLAQHTSRVLGIELLEQAVEDARWTAAFNGITNSEFHTGQAEKILPGLLKSKEDGQSIVA
Sbjct: 361 SLAQHTSRVLGIELLEQAVEDARWTAAFNGITNSEFHTGQAEKILPGLLKSKEDGQSIVA 420
Query: 421 VVNPARAGLHYKVIQAIRNFRAIHTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGEPFV 480
VVNPARAGLHYKVIQAIRNFRAIHTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGEPFV
Sbjct: 421 VVNPARAGLHYKVIQAIRNFRAIHTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGEPFV 480
Query: 481 LQQAVPVDLFPHTPHCELVLLFTR 504
LQQAVPVDLFPHTPHCELVLLFTR
Sbjct: 481 LQQAVPVDLFPHTPHCELVLLFTR 504
>gi|34222389 HpaII tiny fragments locus 9C [Homo sapiens]
Length = 625
Score = 311 bits (796), Expect = 1e-84
Identities = 178/426 (41%), Positives = 252/426 (59%), Gaps = 8/426 (1%)
Query: 83 RLADVVTPLWRLSYEEQLKVKFAAQKKILQRLESYIQMLNGVSVTTAVP---KSERLSCL 139
R+ADVVTPLW + Y EQL+ K +++LQ+L I N + + K + C
Sbjct: 167 RVADVVTPLWTVPYAEQLERKQLECEQVLQKLAKEIGSTNRALLPWLLEQRHKHNKACCP 226
Query: 140 LHPIIPSPVINGYRNKSTFSVNRGPDGNPKTVGFYLGTWRDGNVVCVQSNHLKNIPEKHS 199
L + PSP YRNK F V G DG TVG LG ++ G +IPE
Sbjct: 227 LEGVRPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAAPFDTVHIPEATK 286
Query: 200 QVAQYYEVFLRQSPLEPCLVFHEGGYWRELTVRTNSQGHTMAIITFHPQKLSQEELHVQK 259
QV + ++ F+R +P G+W++LTVRT+ + MAI FHPQKLS EEL K
Sbjct: 287 QVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSRRHQAMAIAYFHPQKLSPEELAELK 346
Query: 260 EIVKEFFIRGPGAACGLTSLYFQESTMTRCSHQQS-PYQLLFGEPYIFEELLSLKIRISP 318
+ + F GPG A G+T LYF E + Q+ P + + G+ I E+LL L RISP
Sbjct: 347 TSLAQHFTAGPGRASGVTCLYFVEEGQRKTPSQEGLPLEHVAGDRCIHEDLLGLTFRISP 406
Query: 319 DAFFQINTAGAEMLYRTVGELTGVNSDTILLDICCGTGVIGLSLAQHTSRVLGIELLEQA 378
AFFQ+NT AE+LY + + +++ +++LD+CCGTG IGL+LA+ RV+G+EL +A
Sbjct: 407 HAFFQVNTPAAEVLYTVIQDWAQLDAGSMVLDVCCGTGTIGLALARKVKRVIGVELCPEA 466
Query: 379 VEDARWTAAFNGITNSEFHTGQAEKILPGLLKSKEDGQSIVAVVNPARAGLHYKVIQAIR 438
VEDAR A N ++N EFH G+AE ++P L+ S+ Q +VA+++P RAGLH KVI AIR
Sbjct: 467 VEDARVNAQDNELSNVEFHCGRAEDLVPTLV-SRLASQHLVAILDPPRAGLHSKVILAIR 525
Query: 439 NFRAIHTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGEPFVLQQAVPVDLFPHTPHCEL 498
+ + L++VSC + N ++LC P+ ++ G PF +AV VDLFP TPHCE+
Sbjct: 526 RAKNLRRLLYVSCNPRA-AMGNFVDLC--RAPSNRVKGIPFRPVKAVAVDLFPQTPHCEM 582
Query: 499 VLLFTR 504
++LF R
Sbjct: 583 LILFER 588
>gi|51173878 HpaII tiny fragments locus 9C [Homo sapiens]
Length = 625
Score = 311 bits (796), Expect = 1e-84
Identities = 178/426 (41%), Positives = 252/426 (59%), Gaps = 8/426 (1%)
Query: 83 RLADVVTPLWRLSYEEQLKVKFAAQKKILQRLESYIQMLNGVSVTTAVP---KSERLSCL 139
R+ADVVTPLW + Y EQL+ K +++LQ+L I N + + K + C
Sbjct: 167 RVADVVTPLWTVPYAEQLERKQLECEQVLQKLAKEIGSTNRALLPWLLEQRHKHNKACCP 226
Query: 140 LHPIIPSPVINGYRNKSTFSVNRGPDGNPKTVGFYLGTWRDGNVVCVQSNHLKNIPEKHS 199
L + PSP YRNK F V G DG TVG LG ++ G +IPE
Sbjct: 227 LEGVRPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAAPFDTVHIPEATK 286
Query: 200 QVAQYYEVFLRQSPLEPCLVFHEGGYWRELTVRTNSQGHTMAIITFHPQKLSQEELHVQK 259
QV + ++ F+R +P G+W++LTVRT+ + MAI FHPQKLS EEL K
Sbjct: 287 QVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSRRHQAMAIAYFHPQKLSPEELAELK 346
Query: 260 EIVKEFFIRGPGAACGLTSLYFQESTMTRCSHQQS-PYQLLFGEPYIFEELLSLKIRISP 318
+ + F GPG A G+T LYF E + Q+ P + + G+ I E+LL L RISP
Sbjct: 347 TSLAQHFTAGPGRASGVTCLYFVEEGQRKTPSQEGLPLEHVAGDRCIHEDLLGLTFRISP 406
Query: 319 DAFFQINTAGAEMLYRTVGELTGVNSDTILLDICCGTGVIGLSLAQHTSRVLGIELLEQA 378
AFFQ+NT AE+LY + + +++ +++LD+CCGTG IGL+LA+ RV+G+EL +A
Sbjct: 407 HAFFQVNTPAAEVLYTVIQDWAQLDAGSMVLDVCCGTGTIGLALARKVKRVIGVELCPEA 466
Query: 379 VEDARWTAAFNGITNSEFHTGQAEKILPGLLKSKEDGQSIVAVVNPARAGLHYKVIQAIR 438
VEDAR A N ++N EFH G+AE ++P L+ S+ Q +VA+++P RAGLH KVI AIR
Sbjct: 467 VEDARVNAQDNELSNVEFHCGRAEDLVPTLV-SRLASQHLVAILDPPRAGLHSKVILAIR 525
Query: 439 NFRAIHTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGEPFVLQQAVPVDLFPHTPHCEL 498
+ + L++VSC + N ++LC P+ ++ G PF +AV VDLFP TPHCE+
Sbjct: 526 RAKNLRRLLYVSCNPRA-AMGNFVDLC--RAPSNRVKGIPFRPVKAVAVDLFPQTPHCEM 582
Query: 499 VLLFTR 504
++LF R
Sbjct: 583 LILFER 588
>gi|223556010 protein arginine methyltransferase 3 isoform 3 [Homo
sapiens]
Length = 454
Score = 34.7 bits (78), Expect = 0.21
Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 21/146 (14%)
Query: 251 SQEELHVQKEIVKEFFIRGPGAACGLTSLYFQESTMTRCSHQQSPYQLLFGEPYIFEELL 310
++E+L K+ ++F + C ++ + + Y +G I EE+L
Sbjct: 102 AREDLQKMKQFAQDFVMHTDVRTCSSSTSVIADLQ----EDEDGVYFSSYGHYGIHEEML 157
Query: 311 SLKIRISPDAFFQINTAGAEMLYRTVGELTGVNSDTILLDICCGTGVIGLSLAQ-HTSRV 369
KIR + + +Y+ + D ++LD+ CGTG++ + A+ +V
Sbjct: 158 KDKIRTE---------SYRDFIYQN----PHIFKDKVVLDVGCGTGILSMFAAKAGAKKV 204
Query: 370 LGI---ELLEQAVEDARWTAAFNGIT 392
LG+ E+L QA++ R + IT
Sbjct: 205 LGVDQSEILYQAMDIIRLNKLEDTIT 230
>gi|223556008 protein arginine methyltransferase 3 isoform 2 [Homo
sapiens]
Length = 469
Score = 34.7 bits (78), Expect = 0.21
Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 21/146 (14%)
Query: 251 SQEELHVQKEIVKEFFIRGPGAACGLTSLYFQESTMTRCSHQQSPYQLLFGEPYIFEELL 310
++E+L K+ ++F + C ++ + + Y +G I EE+L
Sbjct: 117 AREDLQKMKQFAQDFVMHTDVRTCSSSTSVIADLQ----EDEDGVYFSSYGHYGIHEEML 172
Query: 311 SLKIRISPDAFFQINTAGAEMLYRTVGELTGVNSDTILLDICCGTGVIGLSLAQ-HTSRV 369
KIR + + +Y+ + D ++LD+ CGTG++ + A+ +V
Sbjct: 173 KDKIRTE---------SYRDFIYQN----PHIFKDKVVLDVGCGTGILSMFAAKAGAKKV 219
Query: 370 LGI---ELLEQAVEDARWTAAFNGIT 392
LG+ E+L QA++ R + IT
Sbjct: 220 LGVDQSEILYQAMDIIRLNKLEDTIT 245
>gi|44771198 protein arginine methyltransferase 3 isoform 1 [Homo
sapiens]
Length = 531
Score = 34.7 bits (78), Expect = 0.21
Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 21/146 (14%)
Query: 251 SQEELHVQKEIVKEFFIRGPGAACGLTSLYFQESTMTRCSHQQSPYQLLFGEPYIFEELL 310
++E+L K+ ++F + C ++ + + Y +G I EE+L
Sbjct: 179 AREDLQKMKQFAQDFVMHTDVRTCSSSTSVIADLQ----EDEDGVYFSSYGHYGIHEEML 234
Query: 311 SLKIRISPDAFFQINTAGAEMLYRTVGELTGVNSDTILLDICCGTGVIGLSLAQ-HTSRV 369
KIR + + +Y+ + D ++LD+ CGTG++ + A+ +V
Sbjct: 235 KDKIRTE---------SYRDFIYQN----PHIFKDKVVLDVGCGTGILSMFAAKAGAKKV 281
Query: 370 LGI---ELLEQAVEDARWTAAFNGIT 392
LG+ E+L QA++ R + IT
Sbjct: 282 LGVDQSEILYQAMDIIRLNKLEDTIT 307
>gi|212549782 caspase 8 associated protein 2 [Homo sapiens]
Length = 1982
Score = 30.8 bits (68), Expect = 3.0
Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 13/130 (10%)
Query: 131 PKSERLSCLLHPIIPSPVINGYRNKSTFSVNRGPDGNPKTVGFYLGTWRDGNVVCVQSNH 190
P E SC L P +P ++ ++ +R G +V D +V+ + NH
Sbjct: 794 PLVESKSCHLEPCLPKETLDSSLQQTELMDHRMATGETNSVYHD----DDNSVLSIDLNH 849
Query: 191 LKNIPEKHSQVAQYYEVFLRQSPLEPCLVFHEGGYWRELTVRTNSQGHTMAIITFHPQKL 250
L+ IPE S + SP+ P ++ V NS + H
Sbjct: 850 LRPIPEAISPL---------NSPVRPVAKVLRNESPPQVPVYNNSHKDVFLPNSAHSTSK 900
Query: 251 SQEELHVQKE 260
SQ +L+ + +
Sbjct: 901 SQSDLNKENQ 910
>gi|6912288 caspase 8 associated protein 2 [Homo sapiens]
Length = 1982
Score = 30.8 bits (68), Expect = 3.0
Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 13/130 (10%)
Query: 131 PKSERLSCLLHPIIPSPVINGYRNKSTFSVNRGPDGNPKTVGFYLGTWRDGNVVCVQSNH 190
P E SC L P +P ++ ++ +R G +V D +V+ + NH
Sbjct: 794 PLVESKSCHLEPCLPKETLDSSLQQTELMDHRMATGETNSVYHD----DDNSVLSIDLNH 849
Query: 191 LKNIPEKHSQVAQYYEVFLRQSPLEPCLVFHEGGYWRELTVRTNSQGHTMAIITFHPQKL 250
L+ IPE S + SP+ P ++ V NS + H
Sbjct: 850 LRPIPEAISPL---------NSPVRPVAKVLRNESPPQVPVYNNSHKDVFLPNSAHSTSK 900
Query: 251 SQEELHVQKE 260
SQ +L+ + +
Sbjct: 901 SQSDLNKENQ 910
>gi|212549532 caspase 8 associated protein 2 [Homo sapiens]
Length = 1982
Score = 30.8 bits (68), Expect = 3.0
Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 13/130 (10%)
Query: 131 PKSERLSCLLHPIIPSPVINGYRNKSTFSVNRGPDGNPKTVGFYLGTWRDGNVVCVQSNH 190
P E SC L P +P ++ ++ +R G +V D +V+ + NH
Sbjct: 794 PLVESKSCHLEPCLPKETLDSSLQQTELMDHRMATGETNSVYHD----DDNSVLSIDLNH 849
Query: 191 LKNIPEKHSQVAQYYEVFLRQSPLEPCLVFHEGGYWRELTVRTNSQGHTMAIITFHPQKL 250
L+ IPE S + SP+ P ++ V NS + H
Sbjct: 850 LRPIPEAISPL---------NSPVRPVAKVLRNESPPQVPVYNNSHKDVFLPNSAHSTSK 900
Query: 251 SQEELHVQKE 260
SQ +L+ + +
Sbjct: 901 SQSDLNKENQ 910
>gi|7705409 HemK methyltransferase family member 1 [Homo sapiens]
Length = 338
Score = 30.8 bits (68), Expect = 3.0
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 15/97 (15%)
Query: 292 QQSPYQLLFGEPYIFEELLSLKIRISPDAFFQINTAGAEMLYRTVGE-------LTGVNS 344
Q+ P Q + GE + L +R+ P F I E L V E G
Sbjct: 106 QRMPVQYILGE----WDFQGLSLRMVPPVF--IPRPETEELVEWVLEEVAQRSHAVGSPG 159
Query: 345 DTILLDICCGTGVIGLSLAQH--TSRVLGIELLEQAV 379
++L++ CG+G I LSL SRV+ ++ E A+
Sbjct: 160 SPLILEVGCGSGAISLSLLSQLPQSRVIAVDKREAAI 196
>gi|46255049 HMT1 hnRNP methyltransferase-like 1 [Homo sapiens]
Length = 433
Score = 30.0 bits (66), Expect = 5.1
Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 25/124 (20%)
Query: 344 SDTILLDICCGTGVIGL-----------------SLAQHTSRVL-------GIELLEQAV 379
+D ++LD+ CGTG+I L +AQHT +++ I + +Q V
Sbjct: 137 TDKVILDVGCGTGIISLFCAHYARPRAVYAVEASEMAQHTGQLVLQNGFADIITVYQQKV 196
Query: 380 EDARWTAAFNGITNSEFHTGQA-EKILPGLLKSKEDGQSIVAVVNPARAGLHYKVIQAIR 438
ED + + + T E ++ +L +++ V+ P A LH A +
Sbjct: 197 EDVVLPEKVDVLVSEWMGTCLLFEFMIESILYARDAWLKEDGVIWPTMAALHLVPCSADK 256
Query: 439 NFRA 442
++R+
Sbjct: 257 DYRS 260
>gi|46255047 HMT1 hnRNP methyltransferase-like 1 [Homo sapiens]
Length = 433
Score = 30.0 bits (66), Expect = 5.1
Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 25/124 (20%)
Query: 344 SDTILLDICCGTGVIGL-----------------SLAQHTSRVL-------GIELLEQAV 379
+D ++LD+ CGTG+I L +AQHT +++ I + +Q V
Sbjct: 137 TDKVILDVGCGTGIISLFCAHYARPRAVYAVEASEMAQHTGQLVLQNGFADIITVYQQKV 196
Query: 380 EDARWTAAFNGITNSEFHTGQA-EKILPGLLKSKEDGQSIVAVVNPARAGLHYKVIQAIR 438
ED + + + T E ++ +L +++ V+ P A LH A +
Sbjct: 197 EDVVLPEKVDVLVSEWMGTCLLFEFMIESILYARDAWLKEDGVIWPTMAALHLVPCSADK 256
Query: 439 NFRA 442
++R+
Sbjct: 257 DYRS 260
>gi|31340735 zinc finger protein 445 [Homo sapiens]
Length = 1031
Score = 30.0 bits (66), Expect = 5.1
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 4 LKRRVPLHSLRYFISMVGLFSKPGLLPWY-ARNPPG 38
L R V L + R S+VG F+KP L+ W AR P G
Sbjct: 258 LYRDVMLENYRNMASLVGPFTKPALISWLEAREPWG 293
>gi|239757639 PREDICTED: similar to collagen, type I, alpha 2 [Homo
sapiens]
Length = 2378
Score = 29.6 bits (65), Expect = 6.7
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 2/102 (1%)
Query: 376 EQAVEDARWTAAFNGITNSEFHTGQAEKILPGLLKSKEDGQSIVAVVNPARAGLHYKVIQ 435
E V+ A GI N + G A ++ + +++ Q I A + A+ H +Q
Sbjct: 1131 EVEVQGVAHEDAVQGIANEDAAHGIANEVAAHGIANEDAAQGI-ANEDAAQGIAHEDAVQ 1189
Query: 436 AIRNFRAIHTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGE 477
I N A+H V HG + + PD A+ + E
Sbjct: 1190 GIANEDAVHG-VAKEVAAHGVANEDAAHAIAKPDAARGIANE 1230
Score = 29.6 bits (65), Expect = 6.7
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 2/102 (1%)
Query: 376 EQAVEDARWTAAFNGITNSEFHTGQAEKILPGLLKSKEDGQSIVAVVNPARAGLHYKVIQ 435
E V+ A GI N + G A ++ + +++ Q I A + A+ H +Q
Sbjct: 1410 EVEVQGVAHEDAVQGIANEDAAHGIANEVAAHGIANEDAAQGI-ANEDAAQGIAHEDAVQ 1468
Query: 436 AIRNFRAIHTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGE 477
I N A+H V HG + + PD A+ + E
Sbjct: 1469 GIANEDAVHG-VAKEVAAHGVANEDAAHAIAKPDAARGIANE 1509
Score = 29.3 bits (64), Expect = 8.8
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 387 AFNGITNSEFHTGQAEKILP-GLLK-------SKEDGQSIVAVVNPARAGLHYKVIQAIR 438
A +GI N + G A ++ G+ K + ED +A + A+ H +Q I
Sbjct: 416 AAHGIANEDAAQGIANEVAAHGISKEDAVQGIANEDAAQGIAHEDAAQGIAHEDAVQGIA 475
Query: 439 NFRAIHTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGE 477
N A+H V HG + ++ PD A+ + E
Sbjct: 476 NEDAVHG-VAKEVAAHGVANKDAAHAIAKPDAARGIANE 513
>gi|239746652 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1513
Score = 29.6 bits (65), Expect = 6.7
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 2/102 (1%)
Query: 376 EQAVEDARWTAAFNGITNSEFHTGQAEKILPGLLKSKEDGQSIVAVVNPARAGLHYKVIQ 435
E V+ A GI N + G A ++ + +++ Q I A + A+ H +Q
Sbjct: 473 EVEVQGVAHEDAVQGIANEDAAHGIANEVAAHGIANEDAAQGI-ANEDAAQGIAHEDAVQ 531
Query: 436 AIRNFRAIHTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGE 477
I N A+H + HG + + PD A+ + E
Sbjct: 532 GIANEDAVHGIA-KEVAAHGVANEDAAHAIAKPDAARGIANE 572
Score = 29.6 bits (65), Expect = 6.7
Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 11/102 (10%)
Query: 376 EQAVEDARWTAAFNGITNSEFHTGQAEKILPGLLKSKEDGQSIVAVVNPARAGLHYKVIQ 435
E AV+ A +GITN G A ED +A + A+ H +Q
Sbjct: 789 EDAVQGIANEDAAHGITNEVAAHGIAN----------EDAAQGIANEDAAQGIAHEDAVQ 838
Query: 436 AIRNFRAIHTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGE 477
I N A+H+ V HG + + PD A+ + E
Sbjct: 839 GIANEDAVHS-VAKEVAAHGVANEDAAHAIAKPDAARGIANE 879
Score = 29.6 bits (65), Expect = 6.7
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 2/102 (1%)
Query: 376 EQAVEDARWTAAFNGITNSEFHTGQAEKILPGLLKSKEDGQSIVAVVNPARAGLHYKVIQ 435
E V+ A GI N + G A ++ + +++ Q I A + A+ H +Q
Sbjct: 1023 EVEVQGVAHEDAVQGIANEDAAHGIANEVAAHGIANEDAAQGI-ANEDAAQGIAHEDAVQ 1081
Query: 436 AIRNFRAIHTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGE 477
I N A+H V HG + + PD A+ + E
Sbjct: 1082 GIANEDAVHG-VAKEVAAHGVANEDAAHAIAKPDAARGIANE 1122
>gi|238908508 leucine-rich repeat and death domain-containing
protein [Homo sapiens]
Length = 860
Score = 29.3 bits (64), Expect = 8.8
Identities = 47/210 (22%), Positives = 82/210 (39%), Gaps = 23/210 (10%)
Query: 165 DGNPKTVGFYLGTWRDGNVVCVQSNHLKNIPEKHSQVAQYYEVFLRQSPL-EPCLVFHEG 223
D + + + +R+ ++ + N LKNIPEK S A + L + L E H+
Sbjct: 358 DNKLEVISHKIENFRELRILILDKNLLKNIPEKISCCAMLECLSLSDNKLTELPKYIHKL 417
Query: 224 GYWRELTVRTN----------------SQGHTMAIITFHPQKLSQEELHVQKEIVKEFFI 267
R+L V N S + IIT P ++ + ++ E+ +
Sbjct: 418 NNLRKLHVNRNNMVKITDCISHLNNICSLEFSGNIITDVPIEIKNCQKIIKIELSYNKIM 477
Query: 268 RGPGAACGLTSLYFQESTMTRCSHQQSPYQLLFGEPYIFEELLSLKIRISPDAFFQ-INT 326
P C L SLY+ S + P + F + + EL K+ I + F IN
Sbjct: 478 YFPLGLCALDSLYYLSVNGNYIS--EIPVDISFSKQLLHLELSENKLLIFSEHFCSLINL 535
Query: 327 AGAEMLYRTVGELTGVNSDTI---LLDICC 353
++ + ++ S+ I +L +CC
Sbjct: 536 KYLDLGKNQIKKIPASISNMISLHVLILCC 565
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,636,925
Number of Sequences: 37866
Number of extensions: 953080
Number of successful extensions: 1984
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1960
Number of HSP's gapped (non-prelim): 28
length of query: 504
length of database: 18,247,518
effective HSP length: 107
effective length of query: 397
effective length of database: 14,195,856
effective search space: 5635754832
effective search space used: 5635754832
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.