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Search of human proteins with 197927278
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|197927278 Der1-like domain family, member 1 isoform b [Homo
sapiens]
(231 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|197927278 Der1-like domain family, member 1 isoform b [Homo s... 492 e-139
gi|13236516 Der1-like domain family, member 1 isoform a [Homo sa... 480 e-136
gi|31455614 Der1-like domain family, member 2 [Homo sapiens] 120 8e-28
gi|209364542 derlin 3 isoform 1 [Homo sapiens] 116 1e-26
gi|50845411 derlin 3 isoform 2 [Homo sapiens] 116 1e-26
gi|50845409 derlin 3 isoform 3 [Homo sapiens] 116 1e-26
gi|239753508 PREDICTED: hypothetical protein [Homo sapiens] 28 8.7
gi|239748157 PREDICTED: hypothetical protein [Homo sapiens] 28 8.7
gi|239742055 PREDICTED: hypothetical protein XP_002342401 [Homo ... 28 8.7
>gi|197927278 Der1-like domain family, member 1 isoform b [Homo
sapiens]
Length = 231
Score = 492 bits (1266), Expect = e-139
Identities = 231/231 (100%), Positives = 231/231 (100%)
Query: 1 MSDIGDWFRSIPAITRYWFAATVAVPLVGKLGLISPAYLFLWPEAFLYRFQIWRPITATF 60
MSDIGDWFRSIPAITRYWFAATVAVPLVGKLGLISPAYLFLWPEAFLYRFQIWRPITATF
Sbjct: 1 MSDIGDWFRSIPAITRYWFAATVAVPLVGKLGLISPAYLFLWPEAFLYRFQIWRPITATF 60
Query: 61 YFPVGPGTGFLYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQL 120
YFPVGPGTGFLYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQL
Sbjct: 61 YFPVGPGTGFLYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQL 120
Query: 121 LMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSYPMDLGGRNFL 180
LMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSYPMDLGGRNFL
Sbjct: 121 LMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSYPMDLGGRNFL 180
Query: 181 STPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRHNWGQGFRLGDQ 231
STPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRHNWGQGFRLGDQ
Sbjct: 181 STPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRHNWGQGFRLGDQ 231
>gi|13236516 Der1-like domain family, member 1 isoform a [Homo
sapiens]
Length = 251
Score = 480 bits (1235), Expect = e-136
Identities = 231/251 (92%), Positives = 231/251 (92%), Gaps = 20/251 (7%)
Query: 1 MSDIGDWFRSIPAITRYWFAATVAVPLVGKLGLISPAYLFLWPEAFLYRFQIWRPITATF 60
MSDIGDWFRSIPAITRYWFAATVAVPLVGKLGLISPAYLFLWPEAFLYRFQIWRPITATF
Sbjct: 1 MSDIGDWFRSIPAITRYWFAATVAVPLVGKLGLISPAYLFLWPEAFLYRFQIWRPITATF 60
Query: 61 YFPVGPGTGFLYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQL 120
YFPVGPGTGFLYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQL
Sbjct: 61 YFPVGPGTGFLYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQL 120
Query: 121 LMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGS----------- 169
LMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGS
Sbjct: 121 LMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVG 180
Query: 170 ---------YPMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRH 220
YPMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRH
Sbjct: 181 HLYFFLMFRYPMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRH 240
Query: 221 NWGQGFRLGDQ 231
NWGQGFRLGDQ
Sbjct: 241 NWGQGFRLGDQ 251
>gi|31455614 Der1-like domain family, member 2 [Homo sapiens]
Length = 239
Score = 120 bits (302), Expect = 8e-28
Identities = 77/233 (33%), Positives = 120/233 (51%), Gaps = 15/233 (6%)
Query: 8 FRSIPAITRYWFAATVAVPLVGKLGLISPAYLFLWPEAFLYRFQIWRPITATFYFPVGPG 67
+ IP ++R + A V +L LI+P L+ PE FQIWR IT +F GP
Sbjct: 10 YLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFF--GP- 66
Query: 68 TGFLYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQLLMIPLIM 127
GF +L N+ FLY+Y LE G+F GR AD++FM LF + + GL + + L +
Sbjct: 67 VGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMTLFGLFVSLVFLGQAFTI 126
Query: 128 SVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSYPMDLGGRNFLSTPQFLY 187
++YVW++ N + ++F+ F+A +LPWV++GF+ ++G S +DL G FL
Sbjct: 127 MLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLE 186
Query: 188 RWLPSRRGGVSGFGVPPASMRRAADQNGGGGRHN-----------WGQGFRLG 229
P++ GG+ P+ ++ D +N WG+G RLG
Sbjct: 187 DVFPNQPGGIRILKT-PSILKAIFDTPDEDPNYNPLPEERPGGFAWGEGQRLG 238
>gi|209364542 derlin 3 isoform 1 [Homo sapiens]
Length = 239
Score = 116 bits (291), Expect = 1e-26
Identities = 65/189 (34%), Positives = 106/189 (56%), Gaps = 3/189 (1%)
Query: 8 FRSIPAITRYWFAATVAVPLVGKLGLISPAYLFLWPEAFLYRFQIWRPITATFYFPVGPG 67
F +PA+TR + AA V +L L+SP L+ P +FQ+WR +T +F GP
Sbjct: 10 FLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTNFLFF--GP- 66
Query: 68 TGFLYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQLLMIPLIM 127
GF + N+ F+++Y LE G+F GR AD++FM LF + + + GL + L L+
Sbjct: 67 LGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLFFLGQALMA 126
Query: 128 SVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSYPMDLGGRNFLSTPQFLY 187
++YVW++ + + V+F+ F+A +LPW ++GF+ ++G S +DL G FL
Sbjct: 127 MLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGHIYYFLE 186
Query: 188 RWLPSRRGG 196
P++ GG
Sbjct: 187 DVFPNQPGG 195
>gi|50845411 derlin 3 isoform 2 [Homo sapiens]
Length = 235
Score = 116 bits (291), Expect = 1e-26
Identities = 65/189 (34%), Positives = 106/189 (56%), Gaps = 3/189 (1%)
Query: 8 FRSIPAITRYWFAATVAVPLVGKLGLISPAYLFLWPEAFLYRFQIWRPITATFYFPVGPG 67
F +PA+TR + AA V +L L+SP L+ P +FQ+WR +T +F GP
Sbjct: 10 FLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTNFLFF--GP- 66
Query: 68 TGFLYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQLLMIPLIM 127
GF + N+ F+++Y LE G+F GR AD++FM LF + + + GL + L L+
Sbjct: 67 LGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLFFLGQALMA 126
Query: 128 SVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSYPMDLGGRNFLSTPQFLY 187
++YVW++ + + V+F+ F+A +LPW ++GF+ ++G S +DL G FL
Sbjct: 127 MLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGHIYYFLE 186
Query: 188 RWLPSRRGG 196
P++ GG
Sbjct: 187 DVFPNQPGG 195
>gi|50845409 derlin 3 isoform 3 [Homo sapiens]
Length = 205
Score = 116 bits (291), Expect = 1e-26
Identities = 65/189 (34%), Positives = 106/189 (56%), Gaps = 3/189 (1%)
Query: 8 FRSIPAITRYWFAATVAVPLVGKLGLISPAYLFLWPEAFLYRFQIWRPITATFYFPVGPG 67
F +PA+TR + AA V +L L+SP L+ P +FQ+WR +T +F GP
Sbjct: 10 FLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTNFLFF--GP- 66
Query: 68 TGFLYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQLLMIPLIM 127
GF + N+ F+++Y LE G+F GR AD++FM LF + + + GL + L L+
Sbjct: 67 LGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLFFLGQALMA 126
Query: 128 SVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSYPMDLGGRNFLSTPQFLY 187
++YVW++ + + V+F+ F+A +LPW ++GF+ ++G S +DL G FL
Sbjct: 127 MLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGHIYYFLE 186
Query: 188 RWLPSRRGG 196
P++ GG
Sbjct: 187 DVFPNQPGG 195
>gi|239753508 PREDICTED: hypothetical protein [Homo sapiens]
Length = 123
Score = 27.7 bits (60), Expect = 8.7
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 11/42 (26%)
Query: 189 WLPSRRGGVSGFGVPPASMRRAAD---QNGGGGRHNWGQGFR 227
W P RGG +G RR A NGGGGR W R
Sbjct: 11 WRPGPRGGRAG--------RREAGGPGHNGGGGRARWAAAAR 44
>gi|239748157 PREDICTED: hypothetical protein [Homo sapiens]
Length = 128
Score = 27.7 bits (60), Expect = 8.7
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 11/42 (26%)
Query: 189 WLPSRRGGVSGFGVPPASMRRAAD---QNGGGGRHNWGQGFR 227
W P RGG +G RR A NGGGGR W R
Sbjct: 11 WRPGPRGGRAG--------RREAGGPGHNGGGGRARWAAAAR 44
>gi|239742055 PREDICTED: hypothetical protein XP_002342401 [Homo
sapiens]
Length = 128
Score = 27.7 bits (60), Expect = 8.7
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 11/42 (26%)
Query: 189 WLPSRRGGVSGFGVPPASMRRAAD---QNGGGGRHNWGQGFR 227
W P RGG +G RR A NGGGGR W R
Sbjct: 11 WRPGPRGGRAG--------RREAGGPGHNGGGGRARWAAAAR 44
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.330 0.148 0.510
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,291,559
Number of Sequences: 37866
Number of extensions: 436665
Number of successful extensions: 1013
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 999
Number of HSP's gapped (non-prelim): 12
length of query: 231
length of database: 18,247,518
effective HSP length: 99
effective length of query: 132
effective length of database: 14,498,784
effective search space: 1913839488
effective search space used: 1913839488
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.