Search of human proteins with 197927274

Search of human proteins with 197927274

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|197927274 DHDPS-like protein isoform 2 [Homo sapiens]
         (164 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|197927274 DHDPS-like protein isoform 2 [Homo sapiens]              344   2e-95
gi|31543060 DHDPS-like protein isoform 1 [Homo sapiens]               202   1e-52
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo...    30   0.94 
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof...    30   0.94 
gi|122937498 hypothetical LOC646603 [Homo sapiens]                     30   1.2  
gi|217330644 WD repeat domain 12 protein [Homo sapiens]                28   3.6  
gi|189491763 cytochrome P450, family 1, subfamily B, polypeptide...    27   7.9  

>gi|197927274 DHDPS-like protein isoform 2 [Homo sapiens]
          Length = 164

 Score =  344 bits (883), Expect = 2e-95
 Identities = 164/164 (100%), Positives = 164/164 (100%)

Query: 1   MLGPQVWSSVRQGLSRSLSRNVGVWASGEGKKVDIAGIYPPVTTPFTATAEVDYGKLEEN 60
           MLGPQVWSSVRQGLSRSLSRNVGVWASGEGKKVDIAGIYPPVTTPFTATAEVDYGKLEEN
Sbjct: 1   MLGPQVWSSVRQGLSRSLSRNVGVWASGEGKKVDIAGIYPPVTTPFTATAEVDYGKLEEN 60

Query: 61  LHKLGTFPFRGAVGGVCALANVLGAQVCQLERLCCTGQWEDAQKLQHRLIEPNAAVTRRF 120
           LHKLGTFPFRGAVGGVCALANVLGAQVCQLERLCCTGQWEDAQKLQHRLIEPNAAVTRRF
Sbjct: 61  LHKLGTFPFRGAVGGVCALANVLGAQVCQLERLCCTGQWEDAQKLQHRLIEPNAAVTRRF 120

Query: 121 GIPGLKKIMDWFGYYGGPCRAPLQELSPAEEEALRMDFTSNGWL 164
           GIPGLKKIMDWFGYYGGPCRAPLQELSPAEEEALRMDFTSNGWL
Sbjct: 121 GIPGLKKIMDWFGYYGGPCRAPLQELSPAEEEALRMDFTSNGWL 164


>gi|31543060 DHDPS-like protein isoform 1 [Homo sapiens]
          Length = 327

 Score =  202 bits (514), Expect = 1e-52
 Identities = 94/94 (100%), Positives = 94/94 (100%)

Query: 71  GAVGGVCALANVLGAQVCQLERLCCTGQWEDAQKLQHRLIEPNAAVTRRFGIPGLKKIMD 130
           GAVGGVCALANVLGAQVCQLERLCCTGQWEDAQKLQHRLIEPNAAVTRRFGIPGLKKIMD
Sbjct: 234 GAVGGVCALANVLGAQVCQLERLCCTGQWEDAQKLQHRLIEPNAAVTRRFGIPGLKKIMD 293

Query: 131 WFGYYGGPCRAPLQELSPAEEEALRMDFTSNGWL 164
           WFGYYGGPCRAPLQELSPAEEEALRMDFTSNGWL
Sbjct: 294 WFGYYGGPCRAPLQELSPAEEEALRMDFTSNGWL 327



 Score =  149 bits (377), Expect = 8e-37
 Identities = 72/73 (98%), Positives = 72/73 (98%)

Query: 1  MLGPQVWSSVRQGLSRSLSRNVGVWASGEGKKVDIAGIYPPVTTPFTATAEVDYGKLEEN 60
          MLGPQVWSSVRQGLSRSLSRNVGVWASGEGKKVDIAGIYPPVTTPFTATAEVDYGKLEEN
Sbjct: 1  MLGPQVWSSVRQGLSRSLSRNVGVWASGEGKKVDIAGIYPPVTTPFTATAEVDYGKLEEN 60

Query: 61 LHKLGTFPFRGAV 73
          LHKLGTFPFRG V
Sbjct: 61 LHKLGTFPFRGFV 73


>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
            [Homo sapiens]
          Length = 8749

 Score = 30.0 bits (66), Expect = 0.94
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 2/28 (7%)

Query: 84   GAQVCQLERLCCTGQWEDAQKLQHRLIE 111
            GAQV  L+R  CT QW D QK +  +IE
Sbjct: 5019 GAQVDLLQR--CTAQWHDYQKAREEVIE 5044


>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
            [Homo sapiens]
          Length = 8797

 Score = 30.0 bits (66), Expect = 0.94
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 2/28 (7%)

Query: 84   GAQVCQLERLCCTGQWEDAQKLQHRLIE 111
            GAQV  L+R  CT QW D QK +  +IE
Sbjct: 5090 GAQVDLLQR--CTAQWHDYQKAREEVIE 5115


>gi|122937498 hypothetical LOC646603 [Homo sapiens]
          Length = 202

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 11  RQGLSRSLSRNVGVWASGEGKKVDIAGIYPPVTTPFTATAEVDYG 55
           +  L+ S + ++  WA G  +  DI G++P +T PF  + +V +G
Sbjct: 78  QMSLTNSSACHLLCWA-GTQETTDIKGLFPDITRPFKKSFDVKHG 121


>gi|217330644 WD repeat domain 12 protein [Homo sapiens]
          Length = 423

 Score = 28.1 bits (61), Expect = 3.6
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 139 CRAPLQELSPAEEEALRMDFTSNGWL 164
           C+APL +L+  E++ L +D+T  G L
Sbjct: 375 CKAPLYDLAAHEDKVLSVDWTDTGLL 400


>gi|189491763 cytochrome P450, family 1, subfamily B, polypeptide 1
           [Homo sapiens]
          Length = 543

 Score = 26.9 bits (58), Expect = 7.9
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 7/70 (10%)

Query: 76  VCALANVLGAQVCQLERLCCTGQWEDAQKLQHRLIEPNAAVTRRFGIPGLKKIMDWFGYY 135
           V A+ANV+ A VC      C    +D +  +  L+  N    R  G   L  +M W  Y+
Sbjct: 198 VVAVANVMSA-VC----FGCRYSHDDPEFRE--LLSHNEEFGRTVGAGSLVDVMPWLQYF 250

Query: 136 GGPCRAPLQE 145
             P R   +E
Sbjct: 251 PNPVRTVFRE 260


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.138    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,097,950
Number of Sequences: 37866
Number of extensions: 308760
Number of successful extensions: 543
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 538
Number of HSP's gapped (non-prelim): 8
length of query: 164
length of database: 18,247,518
effective HSP length: 94
effective length of query: 70
effective length of database: 14,688,114
effective search space: 1028167980
effective search space used: 1028167980
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.