Search of human proteins with 197209828

Search of human proteins with 197209828

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|197209828 chromosome 2 open reading frame 21 isoform 2 [Homo
sapiens]
         (320 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|197209828 chromosome 2 open reading frame 21 isoform 2 [Homo ...   653   0.0  
gi|197209826 chromosome 2 open reading frame 21 isoform 1 [Homo ...   642   0.0  
gi|5174421 copine 6 [Homo sapiens]                                     32   0.98 
gi|13489083 SAPS domain family, member 3 [Homo sapiens]                30   2.9  
gi|239754668 PREDICTED: mucin 12 [Homo sapiens]                        29   6.4  
gi|239749217 PREDICTED: similar to Mucin-12, partial [Homo sapiens]    29   6.4  
gi|239743293 PREDICTED: mucin 12 [Homo sapiens]                        29   6.4  
gi|55741677 SET domain containing 1A [Homo sapiens]                    29   6.4  

>gi|197209828 chromosome 2 open reading frame 21 isoform 2 [Homo
           sapiens]
          Length = 320

 Score =  653 bits (1685), Expect = 0.0
 Identities = 320/320 (100%), Positives = 320/320 (100%)

Query: 1   MVKRKSSEGQEQDGGRGIPLPIQTFLWRQTSAFLRPKLGKQYEASCVSFERVLVENKLHG 60
           MVKRKSSEGQEQDGGRGIPLPIQTFLWRQTSAFLRPKLGKQYEASCVSFERVLVENKLHG
Sbjct: 1   MVKRKSSEGQEQDGGRGIPLPIQTFLWRQTSAFLRPKLGKQYEASCVSFERVLVENKLHG 60

Query: 61  LSPALSEAIQSISRWELVQAALPHVLHCTATLLSNRNKLGHQDKLGVAETKLLHTLHWML 120
           LSPALSEAIQSISRWELVQAALPHVLHCTATLLSNRNKLGHQDKLGVAETKLLHTLHWML
Sbjct: 61  LSPALSEAIQSISRWELVQAALPHVLHCTATLLSNRNKLGHQDKLGVAETKLLHTLHWML 120

Query: 121 LEAPQDCNNERFGGTDRGSSWGGSSSAFIHQVENQGSPGQPCQSSSNDEEENNRRKIFQN 180
           LEAPQDCNNERFGGTDRGSSWGGSSSAFIHQVENQGSPGQPCQSSSNDEEENNRRKIFQN
Sbjct: 121 LEAPQDCNNERFGGTDRGSSWGGSSSAFIHQVENQGSPGQPCQSSSNDEEENNRRKIFQN 180

Query: 181 SMATVELFVFLFAPLVHRIKESDLTFRLASGLVIWQPMWEHRQPGVSGFTALVKPIRNII 240
           SMATVELFVFLFAPLVHRIKESDLTFRLASGLVIWQPMWEHRQPGVSGFTALVKPIRNII
Sbjct: 181 SMATVELFVFLFAPLVHRIKESDLTFRLASGLVIWQPMWEHRQPGVSGFTALVKPIRNII 240

Query: 241 TAKRSSPINSQSRTCESPNQDARHLEGLQVVCETFQSDSISPKATISGCHRGNSFDGSLS 300
           TAKRSSPINSQSRTCESPNQDARHLEGLQVVCETFQSDSISPKATISGCHRGNSFDGSLS
Sbjct: 241 TAKRSSPINSQSRTCESPNQDARHLEGLQVVCETFQSDSISPKATISGCHRGNSFDGSLS 300

Query: 301 SQTSQERGPSHSRSTFHFPP 320
           SQTSQERGPSHSRSTFHFPP
Sbjct: 301 SQTSQERGPSHSRSTFHFPP 320


>gi|197209826 chromosome 2 open reading frame 21 isoform 1 [Homo
           sapiens]
          Length = 3258

 Score =  642 bits (1655), Expect = 0.0
 Identities = 315/320 (98%), Positives = 317/320 (99%)

Query: 1   MVKRKSSEGQEQDGGRGIPLPIQTFLWRQTSAFLRPKLGKQYEASCVSFERVLVENKLHG 60
           MVKRKSSEGQEQDGGRGIPLPIQTFLWRQTSAFLRPKLGKQYEASCVSFERVLVENKLHG
Sbjct: 1   MVKRKSSEGQEQDGGRGIPLPIQTFLWRQTSAFLRPKLGKQYEASCVSFERVLVENKLHG 60

Query: 61  LSPALSEAIQSISRWELVQAALPHVLHCTATLLSNRNKLGHQDKLGVAETKLLHTLHWML 120
           LSPALSEAIQSISRWELVQAALPHVLHCTATLLSNRNKLGHQDKLGVAETKLLHTLHWML
Sbjct: 61  LSPALSEAIQSISRWELVQAALPHVLHCTATLLSNRNKLGHQDKLGVAETKLLHTLHWML 120

Query: 121 LEAPQDCNNERFGGTDRGSSWGGSSSAFIHQVENQGSPGQPCQSSSNDEEENNRRKIFQN 180
           LEAPQDCNNERFGGTDRGSSWGGSSSAFIHQVENQGSPGQPCQSSSNDEEENNRRKIFQN
Sbjct: 121 LEAPQDCNNERFGGTDRGSSWGGSSSAFIHQVENQGSPGQPCQSSSNDEEENNRRKIFQN 180

Query: 181 SMATVELFVFLFAPLVHRIKESDLTFRLASGLVIWQPMWEHRQPGVSGFTALVKPIRNII 240
           SMATVELFVFLFAPLVHRIKESDLTFRLASGLVIWQPMWEHRQPGVSGFTALVKPIRNII
Sbjct: 181 SMATVELFVFLFAPLVHRIKESDLTFRLASGLVIWQPMWEHRQPGVSGFTALVKPIRNII 240

Query: 241 TAKRSSPINSQSRTCESPNQDARHLEGLQVVCETFQSDSISPKATISGCHRGNSFDGSLS 300
           TAKRSSPINSQSRTCESPNQDARHLEGLQVVCETFQSDSISPKATISGCHRGNSFDGSLS
Sbjct: 241 TAKRSSPINSQSRTCESPNQDARHLEGLQVVCETFQSDSISPKATISGCHRGNSFDGSLS 300

Query: 301 SQTSQERGPSHSRSTFHFPP 320
           SQTSQERGPSHSR++   PP
Sbjct: 301 SQTSQERGPSHSRASLVIPP 320


>gi|5174421 copine 6 [Homo sapiens]
          Length = 557

 Score = 31.6 bits (70), Expect = 0.98
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 241 TAKRSSPINSQSRTCESPNQDARHLEGLQVV---CETFQSDSISP 282
           TA    P +SQS  C SP Q   +L+ L+ V   C+ + SD   P
Sbjct: 314 TASNGDPRSSQSLHCLSPRQPNHYLQALRAVGGICQDYDSDKRFP 358


>gi|13489083 SAPS domain family, member 3 [Homo sapiens]
          Length = 793

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 14/106 (13%)

Query: 95  NRNKLGHQDKLGVAETKLLHTLHWML-------LEAPQDCNNERF-----GGTDRGSSWG 142
           N  K   QD +G      +  +++ L       +   + C  ER      GG+D    W 
Sbjct: 485 NDEKFADQDDIGNVSFDRVSDINFTLNTNESGNIALFEACCKERIQQFDDGGSDEEDIWE 544

Query: 143 GSSSAFIHQVENQGSPGQPCQSSSNDEEENN--RRKIFQNSMATVE 186
               AF  + + + S G      S D EE +  ++ +F+ S A  E
Sbjct: 545 EKHIAFTPESQRRSSSGSTDSEESTDSEEEDGAKQDLFEPSSANTE 590


>gi|239754668 PREDICTED: mucin 12 [Homo sapiens]
          Length = 1952

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 29/102 (28%), Positives = 38/102 (37%), Gaps = 8/102 (7%)

Query: 221 HRQPGVSGFTALVKPIRN--IITAKRSSPINSQS-RTCESPNQDARHLEGLQVVCETFQS 277
           H  PG +G T           +   ++SPI S S  T   P        GL     TF S
Sbjct: 149 HSGPGATGTTLFPSHSATSVFVGEPKTSPITSASMETTALPGSTTT--AGLSEKSTTFYS 206

Query: 278 DSISPKATISGCHRGNSFDGSLSSQTSQERGPSHSRSTFHFP 319
              SP  T+S     +S     S+ +    GP+H   T  FP
Sbjct: 207 SPRSPDRTLSPARTTSSGVSEKSTTSHSRPGPTH---TIAFP 245


>gi|239749217 PREDICTED: similar to Mucin-12, partial [Homo sapiens]
          Length = 861

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 29/102 (28%), Positives = 38/102 (37%), Gaps = 8/102 (7%)

Query: 221 HRQPGVSGFTALVKPIRN--IITAKRSSPINSQS-RTCESPNQDARHLEGLQVVCETFQS 277
           H  PG +G T           +   ++SPI S S  T   P        GL     TF S
Sbjct: 84  HSGPGATGTTLFPSHSATSVFVGEPKTSPITSASMETTALPGSTTT--AGLSEKSTTFYS 141

Query: 278 DSISPKATISGCHRGNSFDGSLSSQTSQERGPSHSRSTFHFP 319
              SP  T+S     +S     S+ +    GP+H   T  FP
Sbjct: 142 SPRSPDRTLSPARTTSSGVSEKSTTSHSRPGPTH---TIAFP 180


>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
          Length = 5478

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 29/102 (28%), Positives = 38/102 (37%), Gaps = 8/102 (7%)

Query: 221 HRQPGVSGFTALVKPIRN--IITAKRSSPINSQS-RTCESPNQDARHLEGLQVVCETFQS 277
           H  PG +G T           +   ++SPI S S  T   P        GL     TF S
Sbjct: 228 HSGPGATGTTLFPSHSATSVFVGEPKTSPITSASMETTALPGSTTT--AGLSEKSTTFYS 285

Query: 278 DSISPKATISGCHRGNSFDGSLSSQTSQERGPSHSRSTFHFP 319
              SP  T+S     +S     S+ +    GP+H   T  FP
Sbjct: 286 SPRSPDRTLSPARTTSSGVSEKSTTSHSRPGPTH---TIAFP 324


>gi|55741677 SET domain containing 1A [Homo sapiens]
          Length = 1707

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 17/49 (34%), Positives = 22/49 (44%)

Query: 126  DCNNERFGGTDRGSSWGGSSSAFIHQVENQGSPGQPCQSSSNDEEENNR 174
            D + E    +D  SS   SSS+      +  S     +SSS DEEE  R
Sbjct: 1022 DSDGENDSTSDSESSSSSSSSSSSSSSSSSSSSSSSSESSSEDEEEEER 1070


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.130    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,045,957
Number of Sequences: 37866
Number of extensions: 586110
Number of successful extensions: 1548
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1534
Number of HSP's gapped (non-prelim): 19
length of query: 320
length of database: 18,247,518
effective HSP length: 102
effective length of query: 218
effective length of database: 14,385,186
effective search space: 3135970548
effective search space used: 3135970548
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.