Search of human proteins with 196162717

Search of human proteins with 196162717

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|196162717 APG10 autophagy 10-like [Homo sapiens]
         (220 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|196162717 APG10 autophagy 10-like [Homo sapiens]                   467   e-132
gi|18594496 APG10 autophagy 10-like [Homo sapiens]                    467   e-132
gi|19526773 Apg3p [Homo sapiens]                                       38   0.006
gi|110735443 delta-like 1 [Homo sapiens]                               29   2.8  
gi|87116668 hypothetical protein LOC9870 [Homo sapiens]                28   4.7  

>gi|196162717 APG10 autophagy 10-like [Homo sapiens]
          Length = 220

 Score =  467 bits (1202), Expect = e-132
 Identities = 220/220 (100%), Positives = 220/220 (100%)

Query: 1   MEEDEFIGEKTFQRYCAEFIKHSQQIGDSWEWRPSKDCSDGYMCKIHFQIKNGSVMSHLG 60
           MEEDEFIGEKTFQRYCAEFIKHSQQIGDSWEWRPSKDCSDGYMCKIHFQIKNGSVMSHLG
Sbjct: 1   MEEDEFIGEKTFQRYCAEFIKHSQQIGDSWEWRPSKDCSDGYMCKIHFQIKNGSVMSHLG 60

Query: 61  ASTHGQTCLPMEEAFELPLDDCEVIETAAASEVIKYEYHVLYSCSYQVPVLYFRASFLDG 120
           ASTHGQTCLPMEEAFELPLDDCEVIETAAASEVIKYEYHVLYSCSYQVPVLYFRASFLDG
Sbjct: 61  ASTHGQTCLPMEEAFELPLDDCEVIETAAASEVIKYEYHVLYSCSYQVPVLYFRASFLDG 120

Query: 121 RPLTLKDIWEGVHECYKMRLLQGPWDTITQQEHPILGQPFFVLHPCKTNEFMTPVLKNSQ 180
           RPLTLKDIWEGVHECYKMRLLQGPWDTITQQEHPILGQPFFVLHPCKTNEFMTPVLKNSQ
Sbjct: 121 RPLTLKDIWEGVHECYKMRLLQGPWDTITQQEHPILGQPFFVLHPCKTNEFMTPVLKNSQ 180

Query: 181 KINKNVNYITSWLSIVGPVVGLNLPLSYAKATSQDERNVP 220
           KINKNVNYITSWLSIVGPVVGLNLPLSYAKATSQDERNVP
Sbjct: 181 KINKNVNYITSWLSIVGPVVGLNLPLSYAKATSQDERNVP 220


>gi|18594496 APG10 autophagy 10-like [Homo sapiens]
          Length = 220

 Score =  467 bits (1202), Expect = e-132
 Identities = 220/220 (100%), Positives = 220/220 (100%)

Query: 1   MEEDEFIGEKTFQRYCAEFIKHSQQIGDSWEWRPSKDCSDGYMCKIHFQIKNGSVMSHLG 60
           MEEDEFIGEKTFQRYCAEFIKHSQQIGDSWEWRPSKDCSDGYMCKIHFQIKNGSVMSHLG
Sbjct: 1   MEEDEFIGEKTFQRYCAEFIKHSQQIGDSWEWRPSKDCSDGYMCKIHFQIKNGSVMSHLG 60

Query: 61  ASTHGQTCLPMEEAFELPLDDCEVIETAAASEVIKYEYHVLYSCSYQVPVLYFRASFLDG 120
           ASTHGQTCLPMEEAFELPLDDCEVIETAAASEVIKYEYHVLYSCSYQVPVLYFRASFLDG
Sbjct: 61  ASTHGQTCLPMEEAFELPLDDCEVIETAAASEVIKYEYHVLYSCSYQVPVLYFRASFLDG 120

Query: 121 RPLTLKDIWEGVHECYKMRLLQGPWDTITQQEHPILGQPFFVLHPCKTNEFMTPVLKNSQ 180
           RPLTLKDIWEGVHECYKMRLLQGPWDTITQQEHPILGQPFFVLHPCKTNEFMTPVLKNSQ
Sbjct: 121 RPLTLKDIWEGVHECYKMRLLQGPWDTITQQEHPILGQPFFVLHPCKTNEFMTPVLKNSQ 180

Query: 181 KINKNVNYITSWLSIVGPVVGLNLPLSYAKATSQDERNVP 220
           KINKNVNYITSWLSIVGPVVGLNLPLSYAKATSQDERNVP
Sbjct: 181 KINKNVNYITSWLSIVGPVVGLNLPLSYAKATSQDERNVP 220


>gi|19526773 Apg3p [Homo sapiens]
          Length = 314

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 18/116 (15%)

Query: 73  EAFELPLDDCEVIETAAAS----------EVIKYEYHVLYSCSYQVPVLYFRASFLDGRP 122
           E  E  LD  +++E   A           +   Y+ ++ Y   YQ P L+        +P
Sbjct: 167 ETDEATLDTRKIVEACKAKTDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQP 226

Query: 123 LTLKDIWEGVHECYKMRLLQGPWDTITQQEHPIL-GQPFFVLHPCKTNEFMTPVLK 177
           LT++ ++E + + +  +       T+T + HP L   P   +HPC+  E M  +++
Sbjct: 227 LTVEHMYEDISQDHVKK-------TVTIENHPHLPPPPMCSVHPCRHAEVMKKIIE 275


>gi|110735443 delta-like 1 [Homo sapiens]
          Length = 723

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 12/82 (14%)

Query: 14  RYCAEFIKHSQQIGDSWEWRPSKDCSDGY----------MCKIHFQIKNGSVMSHLGAST 63
           RYC E I++   +  + +     +C +G+           C  H   KNG+  ++ G  +
Sbjct: 252 RYCDECIRYPGCLHGTCQQPWQCNCQEGWGGLFCNQDLNYCTHHKPCKNGATCTNTGQGS 311

Query: 64  HGQTCLP--MEEAFELPLDDCE 83
           +  +C P       EL +D+C+
Sbjct: 312 YTCSCRPGYTGATCELGIDECD 333


>gi|87116668 hypothetical protein LOC9870 [Homo sapiens]
          Length = 823

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 8/112 (7%)

Query: 2   EEDEFIGEKTFQRYCAEFIKHSQQIGDSWEWRPSKDCSDGYMCKIHFQIKNGSVM-SH-- 58
           E+ E  G++T   Y        +    SW+W+   +       ++H   KNG    +H  
Sbjct: 36  EDRERRGDRTIYDYVRGNYLDPRSCKVSWDWKDPYEVGHSMAFRVHLFYKNGQPFPAHRP 95

Query: 59  LGASTHGQTCLPMEEAFELPLDDCEVIETAAASEVIKYEYHVLYSCSYQVPV 110
           +G   H      +E A E+P+   EV++    S V+K  + V  +  Y++ V
Sbjct: 96  VGLRVH---ISHVELAVEIPVTQ-EVLQ-EPNSNVVKVAFTVRKAGRYEITV 142


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.136    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,003,885
Number of Sequences: 37866
Number of extensions: 408516
Number of successful extensions: 678
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 676
Number of HSP's gapped (non-prelim): 5
length of query: 220
length of database: 18,247,518
effective HSP length: 98
effective length of query: 122
effective length of database: 14,536,650
effective search space: 1773471300
effective search space used: 1773471300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.