Guide to the Human Genome
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Name: ND1 Sequence: fasta or formatted (318aa) NCBI GI: 196123579
Description:

NADH dehydrogenase subunit 1

Homo sapiens neanderthalensis sequence

Other entries for this name:
alt prot [318aa] NADH dehydrogenase subunit 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         28           2
 C cysteine            0.0          0           0
 D aspartate           0.9          3           1
 E glutamate           3.5         11           1
 F phenylalanine       5.0         16           2
 G glycine             3.8         12           1
 H histidine           0.6          2           1
 I isoleucine          6.9         22           2
 K lysine              2.2          7           1
 L leucine            19.8         63           4
 M methionine          4.7         15           2
 N asparagine          4.4         14           1
 P proline             6.9         22           2
 Q glutamine           1.9          6           1
 R arginine            2.2          7           1
 S serine              6.6         21           2
 T threonine          11.0         35           3
 V valine              3.5         11           2
 W tryptophan          2.8          9           1
 Y tyrosine            4.4         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   NADH dehydrogenase subunit 1 
ND1                   0.990   NADH dehydrogenase subunit 1 
BBS12                 0.008   Bardet-Biedl syndrome 12 
THNSL2                0.007   threonine synthase-like 2 
CLCN7                 0.007   chloride channel 7 isoform b 
CLCN7                 0.007   chloride channel 7 isoform a 
PCDHGA10              0.007   protocadherin gamma subfamily A, 10 isoform 1 precur...
PCDHGA10              0.007   protocadherin gamma subfamily A, 10 isoform 2 precur...
ABCA12                0.005   ATP-binding cassette, sub-family A, member 12 isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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