Search of human proteins with 194018542

Search of human proteins with 194018542

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|194018542 hypothetical protein LOC84529 isoform 1 [Homo
sapiens]
         (281 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|194018542 hypothetical protein LOC84529 isoform 1 [Homo sapiens]   583   e-167
gi|14210512 hypothetical protein LOC84529 isoform 2 [Homo sapiens]    391   e-109
gi|134276943 separase [Homo sapiens]                                   34   0.16 
gi|160420295 hypothetical protein LOC85459 [Homo sapiens]              33   0.21 
gi|110347451 platelet/endothelial cell adhesion molecule [Homo s...    30   2.4  
gi|213385323 anaphase-promoting complex subunit 5 isoform b [Hom...    30   3.1  
gi|20127553 anaphase-promoting complex subunit 5 isoform a [Homo...    30   3.1  
gi|148612842 interferon-induced transmembrane protein 3 (1-8U) [...    29   4.0  
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ...    29   5.3  
gi|151101191 interferon induced transmembrane protein 2 (1-8D) [...    28   6.9  

>gi|194018542 hypothetical protein LOC84529 isoform 1 [Homo sapiens]
          Length = 281

 Score =  583 bits (1502), Expect = e-167
 Identities = 281/281 (100%), Positives = 281/281 (100%)

Query: 1   MILTKAQYDEIAQCLVSVPPTRQSLRKLKQRFPSQSQATLLSIFSQEYQKHIKRTHAKHH 60
           MILTKAQYDEIAQCLVSVPPTRQSLRKLKQRFPSQSQATLLSIFSQEYQKHIKRTHAKHH
Sbjct: 1   MILTKAQYDEIAQCLVSVPPTRQSLRKLKQRFPSQSQATLLSIFSQEYQKHIKRTHAKHH 60

Query: 61  TSEAIESYYQRYLNGVVKNGAAPVLLDLANEVDYAPSLMARLILERFLQEHEETPPSKSI 120
           TSEAIESYYQRYLNGVVKNGAAPVLLDLANEVDYAPSLMARLILERFLQEHEETPPSKSI
Sbjct: 61  TSEAIESYYQRYLNGVVKNGAAPVLLDLANEVDYAPSLMARLILERFLQEHEETPPSKSI 120

Query: 121 INSMLRDPSQIPDGVLANQVYQCIVNDCCYGPLVDCIKHAIGHEHEVLLRDLLLEKNLSF 180
           INSMLRDPSQIPDGVLANQVYQCIVNDCCYGPLVDCIKHAIGHEHEVLLRDLLLEKNLSF
Sbjct: 121 INSMLRDPSQIPDGVLANQVYQCIVNDCCYGPLVDCIKHAIGHEHEVLLRDLLLEKNLSF 180

Query: 181 LDEDQLRAKGYDKTPDFILQVPVAVEGHIIHWIESKASFGDECSHHAYLHDQFWSYWNRF 240
           LDEDQLRAKGYDKTPDFILQVPVAVEGHIIHWIESKASFGDECSHHAYLHDQFWSYWNRF
Sbjct: 181 LDEDQLRAKGYDKTPDFILQVPVAVEGHIIHWIESKASFGDECSHHAYLHDQFWSYWNRF 240

Query: 241 GPGLVIYWYGFIQELDCNRERGILLKACFPTNIVTLCHSIA 281
           GPGLVIYWYGFIQELDCNRERGILLKACFPTNIVTLCHSIA
Sbjct: 241 GPGLVIYWYGFIQELDCNRERGILLKACFPTNIVTLCHSIA 281


>gi|14210512 hypothetical protein LOC84529 isoform 2 [Homo sapiens]
          Length = 183

 Score =  391 bits (1004), Expect = e-109
 Identities = 183/183 (100%), Positives = 183/183 (100%)

Query: 99  MARLILERFLQEHEETPPSKSIINSMLRDPSQIPDGVLANQVYQCIVNDCCYGPLVDCIK 158
           MARLILERFLQEHEETPPSKSIINSMLRDPSQIPDGVLANQVYQCIVNDCCYGPLVDCIK
Sbjct: 1   MARLILERFLQEHEETPPSKSIINSMLRDPSQIPDGVLANQVYQCIVNDCCYGPLVDCIK 60

Query: 159 HAIGHEHEVLLRDLLLEKNLSFLDEDQLRAKGYDKTPDFILQVPVAVEGHIIHWIESKAS 218
           HAIGHEHEVLLRDLLLEKNLSFLDEDQLRAKGYDKTPDFILQVPVAVEGHIIHWIESKAS
Sbjct: 61  HAIGHEHEVLLRDLLLEKNLSFLDEDQLRAKGYDKTPDFILQVPVAVEGHIIHWIESKAS 120

Query: 219 FGDECSHHAYLHDQFWSYWNRFGPGLVIYWYGFIQELDCNRERGILLKACFPTNIVTLCH 278
           FGDECSHHAYLHDQFWSYWNRFGPGLVIYWYGFIQELDCNRERGILLKACFPTNIVTLCH
Sbjct: 121 FGDECSHHAYLHDQFWSYWNRFGPGLVIYWYGFIQELDCNRERGILLKACFPTNIVTLCH 180

Query: 279 SIA 281
           SIA
Sbjct: 181 SIA 183


>gi|134276943 separase [Homo sapiens]
          Length = 2120

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 13/137 (9%)

Query: 2   ILTKAQYDEIAQCLVSVPPTRQSLRKLKQRFPSQSQAT----LLSIFSQEYQKHIKRTHA 57
           +LTK Q   + +CL     + Q L  L Q      QA     LL I S+  + H K   +
Sbjct: 757 LLTKGQAPAV-RCLQQTAASLQILAALYQLVAKPMQALEVLLLLRIVSERLKDHSKAAGS 815

Query: 58  KHHTSEAI-----ESYYQRYLNGVVKNGAAPVLLDLANEVDYAPSLMARLILERFLQEHE 112
             H ++ +      SY Q +L    +  ++   LD   +     SL   L+  +    H+
Sbjct: 816 SCHITQLLLTLGCPSYAQLHLE---EAASSLKHLDQTTDTYLLLSLTCDLLRSQLYWTHQ 872

Query: 113 ETPPSKSIINSMLRDPS 129
           +     S++ S+LRDP+
Sbjct: 873 KVTKGVSLLLSVLRDPA 889


>gi|160420295 hypothetical protein LOC85459 [Homo sapiens]
          Length = 2601

 Score = 33.5 bits (75), Expect = 0.21
 Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 9/135 (6%)

Query: 11   IAQCLVSVPPTRQ-SLRKLKQRFPSQSQATLLSIFSQEYQKHIKRTHAKHHTSEAIESYY 69
            +  C   +P ++  SL  L+Q  P      LL    ++  K      A+H     +  + 
Sbjct: 1029 LVSCQSDIPISQDGSLSFLQQFLPLHDSLKLLQ---EQLTKQRDTLQARHEAQVELLLHR 1085

Query: 70   QRYL----NGVVKNGAAPVLLDLANEVDYAPSLMARLILERFLQEHEETPPSKSIINSML 125
            QR L    +G+V + ++PV++  +     +     R I E +L E E   PS  +I    
Sbjct: 1086 QRDLGDSKSGLVSSSSSPVVVQHSVASQASAKAEPRRIQELYLSEKENVGPSCHLIIPTF 1145

Query: 126  RDPS-QIPDGVLANQ 139
            +D S   P   LA Q
Sbjct: 1146 QDKSLSFPQHSLAQQ 1160


>gi|110347451 platelet/endothelial cell adhesion molecule [Homo
           sapiens]
          Length = 738

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 17/80 (21%)

Query: 127 DPSQIPDGVLANQVYQCIVNDCCYGPLVDCIKHAIGHEHEVLLRDLLLEKNLSFLDEDQ- 185
           DP+   D    +  YQC+ ++C              H H  +L ++L  K ++ +DE Q 
Sbjct: 460 DPAVFKDNPTEDVEYQCVADNC--------------HSHAKMLSEVLRVKVIAPVDEVQI 505

Query: 186 --LRAKGYDKTPDFILQVPV 203
             L +K  +   D +LQ  V
Sbjct: 506 SILSSKVVESGEDIVLQCAV 525


>gi|213385323 anaphase-promoting complex subunit 5 isoform b [Homo
           sapiens]
          Length = 643

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 25  LRKLKQRFPSQSQ-ATLLSIFSQEYQKHIKRTHAKHHTSEAIESYYQRYLNGVVKNGAAP 83
           L+ LK+RFP  SQ A L  +  Q+ Q        K+H ++++ +     LN +       
Sbjct: 378 LKHLKERFPPNSQHAQLWMLCDQKIQFDRAMNDGKYHLADSLVTGITA-LNSIEGVYRKA 436

Query: 84  VLLDLANEVDYAPSLMARLIL 104
           V+L   N++  A  L+ +L++
Sbjct: 437 VVLQAQNQMSEAHKLLQKLLV 457


>gi|20127553 anaphase-promoting complex subunit 5 isoform a [Homo
           sapiens]
          Length = 755

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 25  LRKLKQRFPSQSQ-ATLLSIFSQEYQKHIKRTHAKHHTSEAIESYYQRYLNGVVKNGAAP 83
           L+ LK+RFP  SQ A L  +  Q+ Q        K+H ++++ +     LN +       
Sbjct: 490 LKHLKERFPPNSQHAQLWMLCDQKIQFDRAMNDGKYHLADSLVTGITA-LNSIEGVYRKA 548

Query: 84  VLLDLANEVDYAPSLMARLIL 104
           V+L   N++  A  L+ +L++
Sbjct: 549 VVLQAQNQMSEAHKLLQKLLV 569


>gi|148612842 interferon-induced transmembrane protein 3 (1-8U)
           [Homo sapiens]
          Length = 133

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 111 HEETPPSKSIINSMLRDPSQIPDGVLANQVYQCIVNDCCYG 151
           H   PP+ ++I+  +R  + +PD V+ +      +N CC G
Sbjct: 36  HNPAPPTSTVIH--IRSETSVPDHVVWSLFNTLFMNPCCLG 74


>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin
           (with transmembrane signal), 1 [Homo sapiens]
          Length = 3259

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 13/125 (10%)

Query: 3   LTKAQYDEIAQCLVSVPPTRQSLRKLKQRFPSQSQATLLSIFSQEYQKHIKRTHAKHHTS 62
           LT+AQ ++ AQ    +    +    +KQ+   + +      F    Q  + +T A+    
Sbjct: 167 LTQAQAEQPAQSSTEM----EEFVMMKQQLQEKEE------FISTLQAQLSQTQAEQAAQ 216

Query: 63  EAIESYYQRYLNGVVKNGAAPVLLDLANEVDYAPSLMARL-ILERFLQEHEETPPSKSII 121
           + +     R+   V  +     LL L  + D    +  +L +L+R L+EHEE+   ++ +
Sbjct: 217 QVVREKDARFETQVRLH--EDELLQLVTQADVETEMQQKLRVLQRKLEEHEESLVGRAQV 274

Query: 122 NSMLR 126
             +L+
Sbjct: 275 VDLLQ 279


>gi|151101191 interferon induced transmembrane protein 2 (1-8D)
           [Homo sapiens]
          Length = 132

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 111 HEETPPSKSIINSMLRDPSQIPDGVLANQVYQCIVNDCCYG 151
           H   PP  ++I+  +R  + +PD V+ +      +N CC G
Sbjct: 35  HNPAPPMSTVIH--IRSETSVPDHVVWSLFNTLFMNTCCLG 73


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,257,694
Number of Sequences: 37866
Number of extensions: 494753
Number of successful extensions: 1106
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1104
Number of HSP's gapped (non-prelim): 10
length of query: 281
length of database: 18,247,518
effective HSP length: 101
effective length of query: 180
effective length of database: 14,423,052
effective search space: 2596149360
effective search space used: 2596149360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.